Wall clock time and date at job start Fri Apr 10 2020 19:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00203 * 2 1 4 4 C 1.53007 * 109.46990 * 90.00194 * 3 2 1 5 5 H 1.08996 * 112.74159 * 55.33334 * 4 3 2 6 6 C 1.53508 * 113.53111 * 186.15695 * 4 3 2 7 7 C 1.53512 * 83.57601 * 140.80114 * 6 4 3 8 8 N 1.47481 * 113.47354 * 284.56482 * 4 3 2 9 9 C 1.34779 * 120.00166 * 180.02562 * 2 1 3 10 10 O 1.21277 * 120.00360 * 179.97438 * 9 2 1 11 11 C 1.50700 * 119.99544 * 359.97438 * 9 2 1 12 12 H 1.08995 * 109.47917 * 300.00233 * 11 9 2 13 13 C 1.50710 * 109.47099 * 60.00374 * 11 9 2 14 14 H 1.08002 * 119.99872 * 27.29954 * 13 11 9 15 15 C 1.37870 * 120.00063 * 207.29909 * 13 11 9 16 16 N 1.31520 * 120.00110 * 5.90258 * 15 13 11 17 17 Si 1.86798 * 120.00011 * 185.90831 * 15 13 11 18 18 H 1.48509 * 109.47353 * 89.99774 * 17 15 13 19 19 H 1.48501 * 109.47058 * 209.99805 * 17 15 13 20 20 H 1.48494 * 109.47116 * 329.99767 * 17 15 13 21 21 C 1.50702 * 109.46990 * 180.02562 * 11 9 2 22 22 C 1.38241 * 119.99929 * 293.57225 * 21 11 9 23 23 C 1.38234 * 119.99598 * 179.76704 * 22 21 11 24 24 C 1.38237 * 120.00128 * 0.48290 * 23 22 21 25 25 C 1.38234 * 120.00037 * 359.78822 * 24 23 22 26 26 C 1.38236 * 120.00110 * 359.96032 * 25 24 23 27 27 H 1.09003 * 109.47504 * 89.99349 * 1 2 3 28 28 H 1.09001 * 109.47195 * 209.99911 * 1 2 3 29 29 H 1.09001 * 109.46919 * 329.99688 * 1 2 3 30 30 H 1.09004 * 109.47199 * 330.00470 * 3 2 1 31 31 H 1.09004 * 109.47573 * 209.99983 * 3 2 1 32 32 H 1.09000 * 114.16922 * 254.44684 * 6 4 3 33 33 H 1.09004 * 114.17205 * 27.15089 * 6 4 3 34 34 H 1.09003 * 113.47182 * 219.21019 * 7 6 4 35 35 H 1.08991 * 113.53188 * 88.75055 * 7 6 4 36 36 H 1.00894 * 110.99726 * 106.47369 * 8 4 3 37 37 H 0.96995 * 119.99903 * 180.02562 * 16 15 13 38 38 H 1.07998 * 119.99901 * 359.97438 * 22 21 11 39 39 H 1.08000 * 119.99854 * 180.25080 * 23 22 21 40 40 H 1.08003 * 120.00093 * 179.77008 * 24 23 22 41 41 H 1.08003 * 120.00098 * 179.97438 * 25 24 23 42 42 H 1.07992 * 120.00183 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4426 5 1 2.9692 0.9517 2.0304 6 6 3.0837 3.1052 1.5540 7 6 2.1375 3.2484 2.7543 8 7 1.2562 2.2568 2.1099 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3853 -2.4723 -0.0005 12 1 0.7590 -2.5303 0.8896 13 6 0.5185 -2.5518 -1.2308 14 1 0.8013 -2.0181 -2.1261 15 6 -0.6356 -3.3059 -1.2133 16 7 -1.0417 -3.8609 -0.0922 17 14 -1.6225 -3.5394 -2.7820 18 1 -1.1389 -4.7487 -3.4958 19 1 -3.0587 -3.7060 -2.4431 20 1 -1.4545 -2.3495 -3.6543 21 6 2.3646 -3.6177 -0.0005 22 6 3.1776 -3.8320 -1.0978 23 6 4.0793 -4.8798 -1.0958 24 6 4.1609 -5.7194 -0.0006 25 6 3.3439 -5.5085 1.0943 26 6 2.4459 -4.4575 1.0945 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1500 1.1384 -0.5138 32 1 4.1412 3.0968 1.8179 33 1 2.8510 3.7683 0.7207 34 1 1.6890 4.2384 2.8380 35 1 2.5693 2.9007 3.6927 36 1 0.8902 1.6044 2.7869 37 1 -1.8534 -4.3917 -0.0801 38 1 3.1107 -3.1787 -1.9552 39 1 4.7173 -5.0448 -1.9514 40 1 4.8627 -6.5403 -0.0006 41 1 3.4073 -6.1647 1.9498 42 1 1.8074 -4.2930 1.9497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578451902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:15 Heat of formation + Delta-G solvation = 23.045131 kcal Electronic energy + Delta-G solvation = -23377.065125 eV Core-core repulsion = 20129.938617 eV Total energy + Delta-G solvation = -3247.126508 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.87326 -38.91583 -37.65157 -34.53715 -33.63620 -31.06929 -29.91048 -29.17333 -27.60126 -26.95442 -25.61364 -23.98310 -22.79122 -21.55843 -20.55704 -19.55616 -18.21123 -17.07539 -16.79070 -15.98786 -15.83211 -15.25771 -15.12568 -14.45580 -14.17709 -13.77685 -13.73059 -13.52523 -12.81516 -12.49447 -12.29904 -12.11415 -12.00057 -11.81897 -11.65518 -11.58273 -11.47248 -11.23002 -11.04373 -10.97947 -10.88781 -10.61895 -10.34083 -10.24405 -9.96302 -9.41155 -9.02822 -8.71548 -8.51720 -7.92217 -7.79734 -7.57842 -6.24792 -4.28254 2.40520 2.43362 3.21913 3.29550 3.30965 3.70951 3.85207 4.24133 4.31277 4.55178 4.84259 4.91208 5.12203 5.32332 5.37691 5.45391 5.64113 5.71597 5.73951 5.79766 5.82243 5.91118 6.02013 6.07503 6.09498 6.22284 6.25631 6.36668 6.49823 6.52043 6.63127 6.79938 6.90909 6.99549 7.20525 7.24622 7.38630 7.39767 7.49147 7.65522 7.79239 7.98738 8.08691 8.30873 8.72183 9.24020 9.35476 10.83889 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.006177 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.012474 B = 4531.903019 C = 5928.599000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.612 5.612 3 C 0.134 3.866 4 C 0.020 3.980 5 H 0.075 0.925 6 C -0.140 4.140 7 C 0.000 4.000 8 N -0.621 5.621 9 C 0.525 3.475 10 O -0.569 6.569 11 C 0.053 3.947 12 H 0.085 0.915 13 C -0.508 4.508 14 H 0.061 0.939 15 C 0.076 3.924 16 N -0.879 5.879 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.009 4.009 22 C -0.084 4.084 23 C -0.135 4.135 24 C -0.149 4.149 25 C -0.133 4.133 26 C -0.118 4.118 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.320 0.680 37 H 0.266 0.734 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 7.916 3.780 9.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.344 5.344 3 C 0.010 3.990 4 C -0.092 4.092 5 H 0.094 0.906 6 C -0.178 4.178 7 C -0.131 4.131 8 N -0.246 5.246 9 C 0.317 3.683 10 O -0.449 6.449 11 C 0.033 3.967 12 H 0.103 0.897 13 C -0.546 4.546 14 H 0.079 0.921 15 C -0.129 4.129 16 N -0.515 5.515 17 Si 0.720 3.280 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.010 4.010 22 C -0.102 4.102 23 C -0.153 4.153 24 C -0.167 4.167 25 C -0.151 4.151 26 C -0.136 4.136 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.007 8.204 3.256 9.694 hybrid contribution -0.213 -0.849 -0.100 0.881 sum 3.794 7.355 3.156 8.858 Atomic orbital electron populations 1.21723 0.78600 1.02210 1.01938 1.47704 1.07499 1.04797 1.74404 1.21245 0.97774 0.86038 0.93984 1.23611 0.91451 0.95985 0.98144 0.90648 1.23173 0.98832 0.97008 0.98829 1.23436 0.94603 0.98686 0.96358 1.67327 1.21188 1.12685 1.23380 1.21641 0.87485 0.86260 0.72954 1.90564 1.14838 1.88020 1.51478 1.18105 0.92117 0.85010 1.01509 0.89725 1.20603 1.05912 1.31290 0.96789 0.92107 1.24890 0.96854 0.94950 0.96186 1.69888 1.23517 1.32664 1.25391 0.86561 0.79038 0.78953 0.83410 1.20415 1.21051 1.19662 1.20059 0.92824 0.96242 0.91880 1.20822 0.94767 0.96453 0.98155 1.20950 0.99777 0.96628 0.97972 1.20786 1.00901 1.00176 0.94886 1.20889 0.97640 0.98509 0.98039 1.20967 0.98319 0.95930 0.98387 0.92976 0.89633 0.92795 0.90688 0.90180 0.90892 0.88941 0.90094 0.92139 0.86815 0.92408 0.87143 0.87654 0.87779 0.87649 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 9.15 59.84 0.55 2.32 16 2 N -0.61 -11.62 2.87 -181.57 -0.52 -12.14 16 3 C 0.13 2.15 5.43 -4.04 -0.02 2.12 16 4 C 0.02 0.28 4.23 -71.43 -0.30 -0.02 16 5 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 6 C -0.14 -1.54 8.01 -26.20 -0.21 -1.75 16 7 C 0.00 0.00 8.62 -7.55 -0.07 -0.07 16 8 N -0.62 -7.97 8.09 -115.44 -0.93 -8.90 16 9 C 0.53 11.76 6.96 -10.98 -0.08 11.68 16 10 O -0.57 -13.84 15.01 5.56 0.08 -13.76 16 11 C 0.05 1.27 1.55 -94.07 -0.15 1.12 16 12 H 0.09 2.13 6.46 -51.93 -0.34 1.79 16 13 C -0.51 -12.56 5.49 -34.44 -0.19 -12.75 16 14 H 0.06 1.55 7.82 -52.49 -0.41 1.13 16 15 C 0.08 1.90 5.45 -17.82 -0.10 1.80 16 16 N -0.88 -22.85 12.88 55.43 0.71 -22.13 16 17 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 C -0.01 -0.21 4.30 -104.62 -0.45 -0.66 16 22 C -0.08 -1.92 8.33 -39.58 -0.33 -2.25 16 23 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 24 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 25 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16 26 C -0.12 -2.61 9.67 -39.58 -0.38 -2.99 16 27 H 0.05 0.97 7.88 -51.93 -0.41 0.56 16 28 H 0.09 1.73 6.14 -51.93 -0.32 1.41 16 29 H 0.05 0.85 7.66 -51.93 -0.40 0.45 16 30 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.08 1.37 7.42 -51.93 -0.39 0.98 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.32 4.06 8.91 -39.29 -0.35 3.71 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.11 2.56 7.88 -52.49 -0.41 2.15 16 39 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 41 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 42 H 0.11 2.36 7.95 -52.49 -0.42 1.94 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -28.07 346.40 -9.75 -37.82 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.37 Total: 9.74 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.91 Total: -10.79 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.74 Total: -43.18 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.08 Total: -13.76 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.07 -9.75 -37.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578451902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.862 kcal (2) G-P(sol) polarization free energy of solvation -28.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds