Wall clock time and date at job start Fri Apr 10 2020 19:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00203 * 2 1 4 4 C 1.53007 * 109.46990 * 90.00194 * 3 2 1 5 5 H 1.08996 * 112.74159 * 55.33334 * 4 3 2 6 6 C 1.53508 * 113.53111 * 186.15695 * 4 3 2 7 7 C 1.53512 * 83.57601 * 140.80114 * 6 4 3 8 8 N 1.47481 * 113.47354 * 284.56482 * 4 3 2 9 9 C 1.34779 * 120.00166 * 180.02562 * 2 1 3 10 10 O 1.21277 * 120.00360 * 179.97438 * 9 2 1 11 11 C 1.50700 * 119.99544 * 359.97438 * 9 2 1 12 12 H 1.08995 * 109.47917 * 300.00233 * 11 9 2 13 13 C 1.50710 * 109.47099 * 60.00374 * 11 9 2 14 14 H 1.08002 * 119.99872 * 27.29954 * 13 11 9 15 15 C 1.37870 * 120.00063 * 207.29909 * 13 11 9 16 16 N 1.31520 * 120.00110 * 5.90258 * 15 13 11 17 17 Si 1.86798 * 120.00011 * 185.90831 * 15 13 11 18 18 H 1.48509 * 109.47353 * 89.99774 * 17 15 13 19 19 H 1.48501 * 109.47058 * 209.99805 * 17 15 13 20 20 H 1.48494 * 109.47116 * 329.99767 * 17 15 13 21 21 C 1.50702 * 109.46990 * 180.02562 * 11 9 2 22 22 C 1.38241 * 119.99929 * 293.57225 * 21 11 9 23 23 C 1.38234 * 119.99598 * 179.76704 * 22 21 11 24 24 C 1.38237 * 120.00128 * 0.48290 * 23 22 21 25 25 C 1.38234 * 120.00037 * 359.78822 * 24 23 22 26 26 C 1.38236 * 120.00110 * 359.96032 * 25 24 23 27 27 H 1.09003 * 109.47504 * 89.99349 * 1 2 3 28 28 H 1.09001 * 109.47195 * 209.99911 * 1 2 3 29 29 H 1.09001 * 109.46919 * 329.99688 * 1 2 3 30 30 H 1.09004 * 109.47199 * 330.00470 * 3 2 1 31 31 H 1.09004 * 109.47573 * 209.99983 * 3 2 1 32 32 H 1.09000 * 114.16922 * 254.44684 * 6 4 3 33 33 H 1.09004 * 114.17205 * 27.15089 * 6 4 3 34 34 H 1.09003 * 113.47182 * 219.21019 * 7 6 4 35 35 H 1.08991 * 113.53188 * 88.75055 * 7 6 4 36 36 H 1.00894 * 110.99726 * 106.47369 * 8 4 3 37 37 H 0.96995 * 119.99903 * 180.02562 * 16 15 13 38 38 H 1.07998 * 119.99901 * 359.97438 * 22 21 11 39 39 H 1.08000 * 119.99854 * 180.25080 * 23 22 21 40 40 H 1.08003 * 120.00093 * 179.77008 * 24 23 22 41 41 H 1.08003 * 120.00098 * 179.97438 * 25 24 23 42 42 H 1.07992 * 120.00183 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4426 5 1 2.9692 0.9517 2.0304 6 6 3.0837 3.1052 1.5540 7 6 2.1375 3.2484 2.7543 8 7 1.2562 2.2568 2.1099 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3853 -2.4723 -0.0005 12 1 0.7590 -2.5303 0.8896 13 6 0.5185 -2.5518 -1.2308 14 1 0.8013 -2.0181 -2.1261 15 6 -0.6356 -3.3059 -1.2133 16 7 -1.0417 -3.8609 -0.0922 17 14 -1.6225 -3.5394 -2.7820 18 1 -1.1389 -4.7487 -3.4958 19 1 -3.0587 -3.7060 -2.4431 20 1 -1.4545 -2.3495 -3.6543 21 6 2.3646 -3.6177 -0.0005 22 6 3.1776 -3.8320 -1.0978 23 6 4.0793 -4.8798 -1.0958 24 6 4.1609 -5.7194 -0.0006 25 6 3.3439 -5.5085 1.0943 26 6 2.4459 -4.4575 1.0945 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6084 2.0284 -0.5138 31 1 3.1500 1.1384 -0.5138 32 1 4.1412 3.0968 1.8179 33 1 2.8510 3.7683 0.7207 34 1 1.6890 4.2384 2.8380 35 1 2.5693 2.9007 3.6927 36 1 0.8902 1.6044 2.7869 37 1 -1.8534 -4.3917 -0.0801 38 1 3.1107 -3.1787 -1.9552 39 1 4.7173 -5.0448 -1.9514 40 1 4.8627 -6.5403 -0.0006 41 1 3.4073 -6.1647 1.9498 42 1 1.8074 -4.2930 1.9497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578451902.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:14 Heat of formation + Delta-G solvation = 6.151320 kcal Electronic energy + Delta-G solvation = -23377.797696 eV Core-core repulsion = 20129.938617 eV Total energy + Delta-G solvation = -3247.859079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.24412 -40.31320 -39.24626 -36.19755 -35.44930 -32.87433 -31.54053 -30.53674 -28.90700 -28.28990 -27.19916 -25.69296 -24.11689 -23.20113 -22.13093 -20.60611 -19.86598 -18.67036 -18.11826 -17.70835 -17.40561 -16.84836 -16.44596 -16.21482 -15.75302 -15.39438 -15.03829 -14.84568 -14.44774 -14.09649 -13.97958 -13.70455 -13.40456 -13.31417 -13.15589 -12.98841 -12.82276 -12.73701 -12.72480 -12.50808 -12.17327 -12.01600 -11.92575 -11.73590 -11.63689 -11.25402 -10.64958 -10.33513 -10.06249 -9.56416 -9.34074 -9.25674 -8.18462 -6.26533 0.75254 0.80369 1.41467 1.45058 1.52146 1.93335 2.34943 2.44206 3.10551 3.23381 3.26163 3.58125 3.90677 4.09726 4.22246 4.29291 4.30371 4.36239 4.42098 4.51497 4.53805 4.60423 4.67289 4.79821 4.82700 4.86609 4.94784 4.97051 5.00471 5.12753 5.15924 5.21969 5.27992 5.36628 5.44866 5.66625 5.77502 5.79389 5.88284 5.96883 6.24459 6.25920 6.39656 6.62644 6.75354 7.37774 7.50663 8.89906 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.006177 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.012474 B = 4531.903019 C = 5928.599000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.606 5.606 3 C 0.132 3.868 4 C 0.016 3.984 5 H 0.052 0.948 6 C -0.128 4.128 7 C 0.006 3.994 8 N -0.628 5.628 9 C 0.521 3.479 10 O -0.594 6.594 11 C 0.059 3.941 12 H 0.062 0.938 13 C -0.505 4.505 14 H 0.048 0.952 15 C 0.040 3.960 16 N -0.903 5.903 17 Si 0.944 3.056 18 H -0.284 1.284 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.037 4.037 22 C -0.110 4.110 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.142 4.142 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.318 0.682 37 H 0.266 0.734 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 8.256 3.800 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.337 5.337 3 C 0.009 3.991 4 C -0.096 4.096 5 H 0.070 0.930 6 C -0.167 4.167 7 C -0.124 4.124 8 N -0.253 5.253 9 C 0.312 3.688 10 O -0.476 6.476 11 C 0.037 3.963 12 H 0.080 0.920 13 C -0.543 4.543 14 H 0.066 0.934 15 C -0.162 4.162 16 N -0.540 5.540 17 Si 0.770 3.230 18 H -0.210 1.210 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.039 4.039 22 C -0.128 4.128 23 C -0.153 4.153 24 C -0.162 4.162 25 C -0.148 4.148 26 C -0.160 4.160 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.157 0.843 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.661 8.585 3.279 10.304 hybrid contribution -0.371 -0.944 -0.075 1.017 sum 4.290 7.640 3.204 9.330 Atomic orbital electron populations 1.21611 0.78005 1.02271 1.01508 1.47735 1.07927 1.05119 1.72940 1.21450 0.97028 0.84772 0.95844 1.23491 0.92640 0.97180 0.96272 0.93033 1.23184 0.99577 0.94461 0.99433 1.23490 0.93820 0.98704 0.96391 1.67314 1.21044 1.12937 1.24021 1.21464 0.87159 0.86939 0.73224 1.90527 1.15631 1.88462 1.52981 1.17956 0.92042 0.86286 0.99968 0.92036 1.20581 1.06160 1.31011 0.96571 0.93389 1.25432 0.97619 0.94796 0.98321 1.69982 1.23893 1.33362 1.26728 0.85760 0.78066 0.78572 0.80574 1.21034 1.20399 1.19084 1.20167 0.93808 0.96785 0.93090 1.20844 0.96446 0.97907 0.97651 1.21324 0.98975 0.95528 0.99519 1.21265 1.00723 1.00516 0.93650 1.21295 0.96318 0.97672 0.99476 1.21111 0.99640 0.97166 0.98067 0.93543 0.92123 0.90052 0.88841 0.91489 0.89781 0.87887 0.88456 0.91168 0.86978 0.92467 0.88804 0.84700 0.83536 0.84294 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.01 9.15 127.77 1.17 5.17 16 2 N -0.61 -23.64 2.87 -846.74 -2.43 -26.07 16 3 C 0.13 4.22 5.43 86.38 0.47 4.69 16 4 C 0.02 0.45 4.23 42.19 0.18 0.63 16 5 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 6 C -0.13 -2.55 8.01 30.94 0.25 -2.30 16 7 C 0.01 0.11 8.62 83.57 0.72 0.83 16 8 N -0.63 -15.30 8.09 -519.14 -4.20 -19.50 16 9 C 0.52 24.36 6.96 87.66 0.61 24.97 16 10 O -0.59 -30.04 15.01 -3.02 -0.05 -30.09 16 11 C 0.06 2.91 1.55 -13.03 -0.02 2.89 16 12 H 0.06 3.29 6.46 -2.39 -0.02 3.28 16 13 C -0.51 -25.87 5.49 25.60 0.14 -25.73 16 14 H 0.05 2.53 7.82 -2.91 -0.02 2.51 16 15 C 0.04 2.06 5.45 84.65 0.46 2.52 16 16 N -0.90 -48.17 12.88 21.45 0.28 -47.89 16 17 Si 0.94 41.38 29.54 68.60 2.03 43.41 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 C -0.04 -1.84 4.30 -19.86 -0.09 -1.92 16 22 C -0.11 -5.14 8.33 22.27 0.19 -4.95 16 23 C -0.14 -5.27 10.05 22.27 0.22 -5.04 16 24 C -0.14 -5.05 10.05 22.27 0.22 -4.82 16 25 C -0.13 -4.88 10.05 22.27 0.22 -4.66 16 26 C -0.14 -6.38 9.67 22.27 0.22 -6.17 16 27 H 0.05 1.75 7.88 -2.39 -0.02 1.74 16 28 H 0.06 2.56 6.14 -2.39 -0.01 2.55 16 29 H 0.08 2.52 7.66 -2.39 -0.02 2.51 16 30 H 0.09 2.63 8.07 -2.38 -0.02 2.61 16 31 H 0.07 2.32 7.42 -2.38 -0.02 2.31 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.86 8.12 -2.38 -0.02 1.84 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.32 7.88 8.91 -89.70 -0.80 7.08 16 37 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 38 H 0.09 4.55 7.88 -2.91 -0.02 4.53 16 39 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 40 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 41 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 42 H 0.10 4.67 7.95 -2.91 -0.02 4.65 16 Total: -1.00 -61.98 346.40 0.80 -61.18 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 0.21 Total: 32.85 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 4.96 Total: -13.90 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -6.36 Total: -93.46 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.05 Total: -30.09 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -61.98 0.80 -61.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578451902.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.336 kcal (2) G-P(sol) polarization free energy of solvation -61.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds