Wall clock time and date at job start Fri Apr 10 2020 19:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 120.00279 * 2 1 4 4 C 1.52998 * 109.47189 * 270.00681 * 3 2 1 5 5 H 1.09000 * 112.74706 * 55.33165 * 4 3 2 6 6 C 1.53511 * 113.47593 * 186.10069 * 4 3 2 7 7 C 1.53630 * 83.53464 * 140.77003 * 6 4 3 8 8 N 1.47468 * 87.95419 * 334.02493 * 7 6 4 9 9 C 1.34779 * 119.99854 * 180.02562 * 2 1 3 10 10 O 1.21284 * 119.99482 * 179.71834 * 9 2 1 11 11 C 1.50693 * 120.00001 * 359.97438 * 9 2 1 12 12 H 1.09002 * 109.47087 * 59.72718 * 11 9 2 13 13 C 1.50699 * 109.47169 * 299.72672 * 11 9 2 14 14 H 1.07996 * 120.00207 * 325.44186 * 13 11 9 15 15 C 1.37883 * 119.99664 * 145.44884 * 13 11 9 16 16 N 1.31509 * 120.00444 * 5.26039 * 15 13 11 17 17 Si 1.86802 * 119.99678 * 185.25898 * 15 13 11 18 18 H 1.48495 * 109.47141 * 89.99856 * 17 15 13 19 19 H 1.48494 * 109.47111 * 210.00288 * 17 15 13 20 20 H 1.48502 * 109.46835 * 330.00120 * 17 15 13 21 21 C 1.50705 * 109.46940 * 179.72391 * 11 9 2 22 22 C 1.38231 * 119.99938 * 66.11842 * 21 11 9 23 23 C 1.38234 * 119.99888 * 179.74212 * 22 21 11 24 24 C 1.38233 * 120.00093 * 0.52519 * 23 22 21 25 25 C 1.38235 * 119.99805 * 359.74563 * 24 23 22 26 26 C 1.38227 * 120.00060 * 359.97438 * 25 24 23 27 27 H 1.09007 * 109.46885 * 270.00051 * 1 2 3 28 28 H 1.09004 * 109.47599 * 29.99549 * 1 2 3 29 29 H 1.08994 * 109.47676 * 149.99930 * 1 2 3 30 30 H 1.08999 * 109.46888 * 30.00244 * 3 2 1 31 31 H 1.08993 * 109.47221 * 150.00428 * 3 2 1 32 32 H 1.09004 * 114.17448 * 254.43548 * 6 4 3 33 33 H 1.08998 * 114.16988 * 27.14434 * 6 4 3 34 34 H 1.09007 * 113.51604 * 219.23918 * 7 6 4 35 35 H 1.09001 * 113.47771 * 88.80532 * 7 6 4 36 36 H 1.00900 * 111.00684 * 138.65441 * 8 7 6 37 37 H 0.96995 * 120.00158 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.00099 * 359.97438 * 22 21 11 39 39 H 1.08003 * 119.99599 * 180.29015 * 23 22 21 40 40 H 1.08002 * 119.99901 * 179.76488 * 24 23 22 41 41 H 1.08000 * 119.99734 * 179.97438 * 25 24 23 42 42 H 1.08004 * 120.00403 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5370 1.7787 -2.0303 6 6 3.3439 2.9553 -1.5523 7 6 3.9429 2.2070 -2.7530 8 7 3.5238 0.9478 -2.1099 9 6 2.1388 -1.1672 -0.0005 10 8 3.3516 -1.1672 -0.0057 11 6 1.3853 -2.4723 -0.0005 12 1 0.7546 -2.5277 -0.8878 13 6 0.5245 -2.5553 1.2336 14 1 0.8680 -2.1230 2.1617 15 6 -0.7017 -3.1834 1.1778 16 7 -1.0755 -3.7996 0.0778 17 14 -1.8321 -3.1590 2.6649 18 1 -2.7169 -1.9685 2.5946 19 1 -2.6603 -4.3914 2.6773 20 1 -1.0173 -3.0977 3.9049 21 6 2.3646 -3.6177 -0.0080 22 6 3.1871 -3.8310 1.0823 23 6 4.0816 -4.8848 1.0777 24 6 4.1613 -5.7189 -0.0218 25 6 3.3427 -5.5023 -1.1144 26 6 2.4442 -4.4520 -1.1074 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5137 32 1 2.8074 3.8667 -1.8162 33 1 4.0336 3.0853 -0.7183 34 1 5.0246 2.3132 -2.8360 35 1 3.4266 2.4081 -3.6916 36 1 3.1420 0.3052 -2.7877 37 1 -1.9383 -4.2411 0.0385 38 1 3.1282 -3.1765 1.9394 39 1 4.7209 -5.0542 1.9315 40 1 4.8629 -6.5400 -0.0269 41 1 3.4053 -6.1537 -1.9736 42 1 1.8049 -4.2824 -1.9612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578451905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:20 Heat of formation + Delta-G solvation = 26.327346 kcal Electronic energy + Delta-G solvation = -23543.231684 eV Core-core repulsion = 20296.247503 eV Total energy + Delta-G solvation = -3246.984181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.78194 -38.78981 -37.55278 -34.49052 -33.60478 -31.04006 -29.86359 -29.08743 -27.48623 -26.95608 -25.60924 -23.93930 -22.75477 -21.51792 -20.49852 -19.43617 -18.23382 -16.99022 -16.62997 -15.92766 -15.78163 -15.25249 -15.03695 -14.47635 -14.10464 -13.89002 -13.52935 -13.46445 -12.61807 -12.46156 -12.32627 -12.09323 -12.01115 -11.78500 -11.64469 -11.58917 -11.30770 -11.23023 -10.99877 -10.98184 -10.92654 -10.50709 -10.33080 -10.19547 -9.90075 -9.36050 -8.76970 -8.71150 -8.40875 -7.87181 -7.72510 -7.51784 -6.24179 -4.27875 2.45594 2.48567 3.18609 3.27882 3.30806 3.85896 3.89905 4.30632 4.34528 4.58811 4.89472 4.96258 5.12208 5.35361 5.38401 5.51486 5.63857 5.78245 5.78697 5.82588 5.86164 5.90366 5.95579 6.07050 6.17950 6.23742 6.30962 6.42812 6.51558 6.57341 6.67862 6.73281 6.93388 7.04457 7.23778 7.42004 7.44044 7.46168 7.54006 7.66738 7.82209 8.03351 8.13246 8.38959 8.73774 9.34327 9.41318 10.84033 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.006866 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.673202 B = 4077.110217 C = 5694.211164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.618 5.618 3 C 0.133 3.867 4 C 0.017 3.983 5 H 0.069 0.931 6 C -0.139 4.139 7 C -0.004 4.004 8 N -0.599 5.599 9 C 0.524 3.476 10 O -0.544 6.544 11 C 0.052 3.948 12 H 0.084 0.916 13 C -0.506 4.506 14 H 0.060 0.940 15 C 0.074 3.926 16 N -0.879 5.879 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.006 4.006 22 C -0.084 4.084 23 C -0.134 4.134 24 C -0.150 4.150 25 C -0.132 4.132 26 C -0.118 4.118 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.317 0.683 37 H 0.266 0.734 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 8.498 -3.747 9.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.352 5.352 3 C 0.009 3.991 4 C -0.096 4.096 5 H 0.087 0.913 6 C -0.177 4.177 7 C -0.135 4.135 8 N -0.223 5.223 9 C 0.314 3.686 10 O -0.421 6.421 11 C 0.031 3.969 12 H 0.102 0.898 13 C -0.544 4.544 14 H 0.079 0.921 15 C -0.131 4.131 16 N -0.515 5.515 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.007 4.007 22 C -0.102 4.102 23 C -0.153 4.153 24 C -0.168 4.168 25 C -0.150 4.150 26 C -0.136 4.136 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.201 8.132 -3.223 9.704 hybrid contribution -1.634 0.068 0.032 1.636 sum 2.567 8.200 -3.191 9.166 Atomic orbital electron populations 1.21677 0.79399 1.01531 1.01905 1.47712 1.06838 1.05152 1.75497 1.21238 0.97983 0.85870 0.94044 1.23605 0.94373 0.93425 0.98156 0.91333 1.23176 0.99139 0.96272 0.99113 1.23484 1.01579 0.92423 0.95990 1.67461 1.25265 1.06839 1.22722 1.21583 0.87680 0.85874 0.73457 1.90623 1.14336 1.87561 1.49548 1.18120 0.92218 0.85312 1.01238 0.89808 1.20650 1.01043 1.37856 0.94822 0.92149 1.24919 0.97769 0.94304 0.96073 1.69918 1.21427 1.33338 1.26840 0.86569 0.80669 0.77681 0.83122 1.20316 1.21109 1.19695 1.20019 0.92679 0.96186 0.91824 1.20800 0.94855 0.96377 0.98213 1.20937 0.99819 0.96589 0.97917 1.20769 1.00892 1.00261 0.94865 1.20874 0.97626 0.98507 0.98014 1.20947 0.98354 0.96001 0.98283 0.92798 0.94180 0.89504 0.91307 0.89710 0.91148 0.88919 0.90184 0.92520 0.87066 0.92448 0.87259 0.87721 0.87839 0.87711 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 9.15 59.84 0.55 2.27 16 2 N -0.62 -11.68 2.87 -181.58 -0.52 -12.20 16 3 C 0.13 2.11 5.42 -4.04 -0.02 2.09 16 4 C 0.02 0.23 4.23 -71.44 -0.30 -0.07 16 5 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.14 -1.55 8.02 -26.14 -0.21 -1.76 16 7 C 0.00 -0.05 8.62 -7.50 -0.06 -0.11 16 8 N -0.60 -9.35 8.11 -115.29 -0.93 -10.29 16 9 C 0.52 11.75 6.96 -10.99 -0.08 11.67 16 10 O -0.54 -13.36 14.61 5.55 0.08 -13.28 16 11 C 0.05 1.24 1.58 -94.08 -0.15 1.09 16 12 H 0.08 2.11 6.39 -51.93 -0.33 1.78 16 13 C -0.51 -12.53 5.54 -34.44 -0.19 -12.72 16 14 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 15 C 0.07 1.84 5.42 -17.82 -0.10 1.74 16 16 N -0.88 -22.83 12.85 55.43 0.71 -22.12 16 17 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C -0.01 -0.15 4.30 -104.62 -0.45 -0.59 16 22 C -0.08 -1.95 8.31 -39.59 -0.33 -2.28 16 23 C -0.13 -2.75 10.05 -39.58 -0.40 -3.15 16 24 C -0.15 -2.89 10.05 -39.58 -0.40 -3.28 16 25 C -0.13 -2.64 10.05 -39.59 -0.40 -3.03 16 26 C -0.12 -2.64 9.67 -39.59 -0.38 -3.02 16 27 H 0.05 0.97 7.89 -51.93 -0.41 0.56 16 28 H 0.04 0.57 8.07 -51.93 -0.42 0.15 16 29 H 0.09 1.73 6.11 -51.93 -0.32 1.41 16 30 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.08 1.54 7.42 -51.93 -0.39 1.15 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.06 8.12 -51.93 -0.42 0.64 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.32 5.03 8.91 -39.29 -0.35 4.68 16 37 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.11 2.58 7.89 -52.49 -0.41 2.16 16 39 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.11 2.37 7.96 -52.48 -0.42 1.95 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -28.81 346.36 -9.77 -38.59 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.39 Total: 10.56 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.92 Total: -11.16 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.74 Total: -44.61 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.81 -9.77 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578451905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.913 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds