Wall clock time and date at job start Fri Apr 10 2020 19:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46503 * 120.00279 * 2 1 4 4 C 1.52998 * 109.47189 * 270.00681 * 3 2 1 5 5 H 1.09000 * 112.74706 * 55.33165 * 4 3 2 6 6 C 1.53511 * 113.47593 * 186.10069 * 4 3 2 7 7 C 1.53630 * 83.53464 * 140.77003 * 6 4 3 8 8 N 1.47468 * 87.95419 * 334.02493 * 7 6 4 9 9 C 1.34779 * 119.99854 * 180.02562 * 2 1 3 10 10 O 1.21284 * 119.99482 * 179.71834 * 9 2 1 11 11 C 1.50693 * 120.00001 * 359.97438 * 9 2 1 12 12 H 1.09002 * 109.47087 * 59.72718 * 11 9 2 13 13 C 1.50699 * 109.47169 * 299.72672 * 11 9 2 14 14 H 1.07996 * 120.00207 * 325.44186 * 13 11 9 15 15 C 1.37883 * 119.99664 * 145.44884 * 13 11 9 16 16 N 1.31509 * 120.00444 * 5.26039 * 15 13 11 17 17 Si 1.86802 * 119.99678 * 185.25898 * 15 13 11 18 18 H 1.48495 * 109.47141 * 89.99856 * 17 15 13 19 19 H 1.48494 * 109.47111 * 210.00288 * 17 15 13 20 20 H 1.48502 * 109.46835 * 330.00120 * 17 15 13 21 21 C 1.50705 * 109.46940 * 179.72391 * 11 9 2 22 22 C 1.38231 * 119.99938 * 66.11842 * 21 11 9 23 23 C 1.38234 * 119.99888 * 179.74212 * 22 21 11 24 24 C 1.38233 * 120.00093 * 0.52519 * 23 22 21 25 25 C 1.38235 * 119.99805 * 359.74563 * 24 23 22 26 26 C 1.38227 * 120.00060 * 359.97438 * 25 24 23 27 27 H 1.09007 * 109.46885 * 270.00051 * 1 2 3 28 28 H 1.09004 * 109.47599 * 29.99549 * 1 2 3 29 29 H 1.08994 * 109.47676 * 149.99930 * 1 2 3 30 30 H 1.08999 * 109.46888 * 30.00244 * 3 2 1 31 31 H 1.08993 * 109.47221 * 150.00428 * 3 2 1 32 32 H 1.09004 * 114.17448 * 254.43548 * 6 4 3 33 33 H 1.08998 * 114.16988 * 27.14434 * 6 4 3 34 34 H 1.09007 * 113.51604 * 219.23918 * 7 6 4 35 35 H 1.09001 * 113.47771 * 88.80532 * 7 6 4 36 36 H 1.00900 * 111.00684 * 138.65441 * 8 7 6 37 37 H 0.96995 * 120.00158 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.00099 * 359.97438 * 22 21 11 39 39 H 1.08003 * 119.99599 * 180.29015 * 23 22 21 40 40 H 1.08002 * 119.99901 * 179.76488 * 24 23 22 41 41 H 1.08000 * 119.99734 * 179.97438 * 25 24 23 42 42 H 1.08004 * 120.00403 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.5370 1.7787 -2.0303 6 6 3.3439 2.9553 -1.5523 7 6 3.9429 2.2070 -2.7530 8 7 3.5238 0.9478 -2.1099 9 6 2.1388 -1.1672 -0.0005 10 8 3.3516 -1.1672 -0.0057 11 6 1.3853 -2.4723 -0.0005 12 1 0.7546 -2.5277 -0.8878 13 6 0.5245 -2.5553 1.2336 14 1 0.8680 -2.1230 2.1617 15 6 -0.7017 -3.1834 1.1778 16 7 -1.0755 -3.7996 0.0778 17 14 -1.8321 -3.1590 2.6649 18 1 -2.7169 -1.9685 2.5946 19 1 -2.6603 -4.3914 2.6773 20 1 -1.0173 -3.0977 3.9049 21 6 2.3646 -3.6177 -0.0080 22 6 3.1871 -3.8310 1.0823 23 6 4.0816 -4.8848 1.0777 24 6 4.1613 -5.7189 -0.0218 25 6 3.3427 -5.5023 -1.1144 26 6 2.4442 -4.4520 -1.1074 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5137 32 1 2.8074 3.8667 -1.8162 33 1 4.0336 3.0853 -0.7183 34 1 5.0246 2.3132 -2.8360 35 1 3.4266 2.4081 -3.6916 36 1 3.1420 0.3052 -2.7877 37 1 -1.9383 -4.2411 0.0385 38 1 3.1282 -3.1765 1.9394 39 1 4.7209 -5.0542 1.9315 40 1 4.8629 -6.5400 -0.0269 41 1 3.4053 -6.1537 -1.9736 42 1 1.8049 -4.2824 -1.9612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578451905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:20 Heat of formation + Delta-G solvation = 8.464915 kcal Electronic energy + Delta-G solvation = -23544.006257 eV Core-core repulsion = 20296.247503 eV Total energy + Delta-G solvation = -3247.758754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14940 -40.22682 -39.15154 -36.12455 -35.42094 -32.84901 -31.52336 -30.45494 -28.82014 -28.34138 -27.13242 -25.65502 -24.07973 -23.18925 -22.08930 -20.48785 -19.86590 -18.63211 -18.01584 -17.59070 -17.36817 -16.80205 -16.37533 -16.18659 -15.72395 -15.44321 -14.95245 -14.88238 -14.20980 -14.08705 -13.92888 -13.68240 -13.38986 -13.32239 -13.15187 -12.91376 -12.76213 -12.70541 -12.64994 -12.48201 -12.15201 -11.99362 -11.91249 -11.64082 -11.59603 -11.23223 -10.62571 -10.20260 -9.88247 -9.54406 -9.22909 -9.21705 -8.16983 -6.25876 0.77235 0.83066 1.41782 1.45519 1.53221 2.10772 2.42575 2.46656 3.11180 3.26491 3.31433 3.60301 3.96645 4.18105 4.24270 4.30566 4.31787 4.39394 4.43102 4.50923 4.55071 4.59775 4.67563 4.82859 4.83324 4.90749 4.96560 4.98147 5.03535 5.13971 5.24670 5.26659 5.34069 5.39866 5.47321 5.68037 5.79364 5.83686 5.96358 6.01596 6.27354 6.33226 6.42416 6.72678 6.77740 7.38768 7.69010 8.90998 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.006866 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.673202 B = 4077.110217 C = 5694.211164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.614 5.614 3 C 0.130 3.870 4 C 0.015 3.985 5 H 0.081 0.919 6 C -0.121 4.121 7 C -0.001 4.001 8 N -0.637 5.637 9 C 0.521 3.479 10 O -0.572 6.572 11 C 0.058 3.942 12 H 0.061 0.939 13 C -0.505 4.505 14 H 0.045 0.955 15 C 0.040 3.960 16 N -0.904 5.904 17 Si 0.945 3.055 18 H -0.261 1.261 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.034 4.034 22 C -0.111 4.111 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.129 4.129 26 C -0.142 4.142 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.308 0.692 37 H 0.266 0.734 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 9.212 -3.914 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.346 5.346 3 C 0.007 3.993 4 C -0.097 4.097 5 H 0.098 0.902 6 C -0.160 4.160 7 C -0.131 4.131 8 N -0.261 5.261 9 C 0.311 3.689 10 O -0.451 6.451 11 C 0.037 3.963 12 H 0.079 0.921 13 C -0.542 4.542 14 H 0.063 0.937 15 C -0.162 4.162 16 N -0.541 5.541 17 Si 0.770 3.230 18 H -0.186 1.186 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.035 4.035 22 C -0.129 4.129 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.147 4.147 26 C -0.160 4.160 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.349 8.892 -3.392 10.463 hybrid contribution -1.619 -0.168 0.063 1.629 sum 2.730 8.724 -3.329 9.728 Atomic orbital electron populations 1.21648 0.78467 1.02215 1.01716 1.47726 1.07496 1.05370 1.74028 1.21472 0.96880 0.84965 0.95988 1.23646 0.95016 0.94565 0.96438 0.90150 1.23120 0.98169 0.96207 0.98458 1.23556 1.01914 0.90559 0.97039 1.67495 1.26327 1.08565 1.23724 1.21352 0.87280 0.86609 0.73634 1.90588 1.15282 1.88072 1.51184 1.17969 0.92062 0.86598 0.99713 0.92105 1.20601 1.01469 1.37685 0.94490 0.93693 1.25459 0.98720 0.93938 0.98093 1.70015 1.21730 1.34105 1.28295 0.85757 0.79107 0.78025 0.80090 1.18603 1.21340 1.20265 1.20169 0.93626 0.96802 0.92942 1.20810 0.96584 0.97811 0.97737 1.21306 0.99054 0.95537 0.99464 1.21241 1.00751 1.00611 0.93641 1.21283 0.96303 0.97675 0.99443 1.21097 0.99681 0.97244 0.97973 0.93346 0.89985 0.92289 0.88117 0.92376 0.88019 0.89388 0.90181 0.90508 0.88043 0.92468 0.89086 0.84856 0.83610 0.84336 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.57 9.15 127.77 1.17 4.74 16 2 N -0.61 -23.50 2.87 -846.78 -2.43 -25.93 16 3 C 0.13 4.05 5.42 86.38 0.47 4.52 16 4 C 0.02 0.41 4.23 42.18 0.18 0.58 16 5 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 6 C -0.12 -2.41 8.02 30.98 0.25 -2.16 16 7 C 0.00 -0.01 8.62 83.61 0.72 0.71 16 8 N -0.64 -19.86 8.11 -518.67 -4.21 -24.06 16 9 C 0.52 24.39 6.96 87.65 0.61 25.00 16 10 O -0.57 -29.36 14.61 -3.04 -0.04 -29.41 16 11 C 0.06 2.88 1.58 -13.03 -0.02 2.86 16 12 H 0.06 3.26 6.39 -2.39 -0.02 3.25 16 13 C -0.50 -25.93 5.54 25.60 0.14 -25.79 16 14 H 0.04 2.40 7.82 -2.91 -0.02 2.38 16 15 C 0.04 2.02 5.42 84.66 0.46 2.48 16 16 N -0.90 -48.19 12.85 21.45 0.28 -47.91 16 17 Si 0.94 40.77 29.54 68.60 2.03 42.79 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 19 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 C -0.03 -1.71 4.30 -19.86 -0.09 -1.80 16 22 C -0.11 -5.30 8.31 22.27 0.19 -5.12 16 23 C -0.14 -5.42 10.05 22.27 0.22 -5.20 16 24 C -0.14 -5.22 10.05 22.27 0.22 -4.99 16 25 C -0.13 -4.97 10.05 22.27 0.22 -4.75 16 26 C -0.14 -6.49 9.67 22.27 0.22 -6.28 16 27 H 0.05 1.73 7.89 -2.38 -0.02 1.71 16 28 H 0.08 2.15 8.07 -2.38 -0.02 2.13 16 29 H 0.06 2.41 6.11 -2.39 -0.01 2.40 16 30 H 0.10 2.46 8.07 -2.39 -0.02 2.44 16 31 H 0.06 2.14 7.42 -2.39 -0.02 2.12 16 32 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16 34 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.31 9.99 8.91 -89.69 -0.80 9.19 16 37 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 38 H 0.09 4.53 7.89 -2.91 -0.02 4.51 16 39 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 40 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 41 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.10 4.72 7.96 -2.91 -0.02 4.70 16 Total: -1.00 -64.96 346.36 0.79 -64.17 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: 0.21 Total: 35.54 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 4.96 Total: -15.19 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -6.36 Total: -97.91 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.04 Total: -29.41 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Total: -64.96 0.79 -64.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578451905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.637 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds