Wall clock time and date at job start Fri Apr 10 2020 19:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99770 * 2 1 4 4 H 1.08004 * 119.99461 * 204.92685 * 3 2 1 5 5 C 1.38806 * 120.00351 * 24.92997 * 3 2 1 6 6 N 1.31622 * 119.99968 * 5.38286 * 5 3 2 7 7 Si 1.86801 * 120.00036 * 185.38619 * 5 3 2 8 8 H 1.48502 * 109.47260 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.46840 * 119.99816 * 7 5 3 10 10 H 1.48495 * 109.47411 * 239.99550 * 7 5 3 11 11 C 1.46499 * 120.00084 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46861 * 270.00253 * 11 2 1 13 13 N 1.46502 * 109.46505 * 179.97438 * 12 11 2 14 14 C 1.46497 * 120.00096 * 269.99585 * 13 12 11 15 15 C 1.34777 * 119.99881 * 90.00164 * 13 12 11 16 16 O 1.21280 * 120.00226 * 5.63930 * 15 13 12 17 17 C 1.50702 * 120.00053 * 185.63394 * 15 13 12 18 18 F 1.39901 * 109.61385 * 50.96624 * 17 15 13 19 19 C 1.53178 * 109.54683 * 171.17826 * 17 15 13 20 20 C 1.53086 * 109.16303 * 176.83987 * 19 17 15 21 21 O 1.42905 * 109.42367 * 302.40644 * 20 19 17 22 22 C 1.42894 * 114.10008 * 61.14955 * 21 20 19 23 23 C 1.53091 * 109.41825 * 298.84698 * 22 21 20 24 24 H 1.09002 * 109.47127 * 275.01575 * 1 2 3 25 25 H 1.09008 * 109.47103 * 35.01054 * 1 2 3 26 26 H 1.08998 * 109.47313 * 155.00993 * 1 2 3 27 27 H 0.97000 * 119.99648 * 179.97438 * 6 5 3 28 28 H 1.09003 * 109.47039 * 149.99937 * 11 2 1 29 29 H 1.08994 * 109.46859 * 30.00098 * 11 2 1 30 30 H 1.08995 * 109.46965 * 59.99968 * 12 11 2 31 31 H 1.09000 * 109.46832 * 299.99576 * 12 11 2 32 32 H 1.08996 * 109.47085 * 274.90380 * 14 13 12 33 33 H 1.09000 * 109.47098 * 34.90150 * 14 13 12 34 34 H 1.09001 * 109.47211 * 154.90890 * 14 13 12 35 35 H 1.08999 * 109.51363 * 56.93387 * 19 17 15 36 36 H 1.09007 * 109.52462 * 296.74679 * 19 17 15 37 37 H 1.09004 * 109.48031 * 182.41758 * 20 19 17 38 38 H 1.08994 * 109.48622 * 62.39551 * 20 19 17 39 39 H 1.09008 * 109.47653 * 58.82863 * 22 21 20 40 40 H 1.09004 * 109.48233 * 178.84512 * 22 21 20 41 41 H 1.09003 * 109.52066 * 177.50893 * 23 22 21 42 42 H 1.09000 * 109.52086 * 297.69722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1542 1.2295 -0.3942 5 6 1.5526 2.3321 0.5067 6 7 0.3716 2.2591 1.0831 7 14 2.4253 3.9781 0.3704 8 1 3.7293 3.7918 -0.3153 9 1 1.5854 4.9204 -0.4119 10 1 2.6547 4.5308 1.7295 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7097 1.4433 13 7 3.1844 -2.9788 1.4438 14 6 2.4514 -4.2472 1.4446 15 6 4.5322 -2.9793 1.4437 16 8 5.1390 -1.9343 1.5464 17 6 5.2852 -4.2784 1.3160 18 9 4.8009 -4.9959 0.2170 19 6 6.7769 -3.9893 1.1219 20 6 7.5432 -5.3136 1.0724 21 8 7.3015 -6.0477 2.2744 22 6 5.9296 -6.3876 2.4847 23 6 5.0984 -5.1064 2.5912 24 1 -0.3633 0.0898 1.0237 25 1 -0.3634 0.8418 -0.5896 26 1 -0.3634 -0.9314 -0.4341 27 1 -0.0454 3.0600 1.4375 28 1 3.1499 -1.1386 -0.5133 29 1 1.6084 -2.0285 -0.5129 30 1 1.5000 -1.8398 1.9571 31 1 3.0415 -0.9498 1.9568 32 1 2.1938 -4.5173 2.4686 33 1 1.5398 -4.1403 0.8567 34 1 3.0754 -5.0276 1.0090 35 1 7.1424 -3.3877 1.9541 36 1 6.9244 -3.4479 0.1874 37 1 8.6103 -5.1127 0.9774 38 1 7.2056 -5.8972 0.2160 39 1 5.5706 -6.9852 1.6468 40 1 5.8343 -6.9607 3.4071 41 1 4.0456 -5.3638 2.7074 42 1 5.4301 -4.5276 3.4532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698990309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:25 Heat of formation + Delta-G solvation = -94.858327 kcal Electronic energy + Delta-G solvation = -24417.777214 eV Core-core repulsion = 20734.768804 eV Total energy + Delta-G solvation = -3683.008411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.30734 -39.92111 -38.76689 -36.18598 -34.97051 -33.36020 -31.64715 -31.31510 -28.75190 -26.95963 -25.93104 -25.60105 -24.08589 -23.33773 -21.04595 -20.31687 -19.40147 -17.41270 -16.96596 -16.75516 -16.41784 -16.24497 -15.60656 -15.40452 -15.19723 -14.67103 -14.38921 -14.25907 -13.57877 -13.22279 -13.03671 -12.99437 -12.81550 -12.72893 -12.49731 -12.41074 -12.26489 -11.87091 -11.59449 -11.30802 -10.97327 -10.85297 -10.83596 -10.75231 -10.50515 -10.13533 -10.09427 -9.95175 -9.76805 -9.42966 -8.62642 -8.42445 -6.72717 -5.71288 -3.19592 2.53128 3.01359 3.40807 3.47693 3.51219 3.53959 3.98511 4.06569 4.27333 4.46435 4.53750 4.55469 4.88131 5.03141 5.11174 5.19142 5.23457 5.33236 5.37886 5.38271 5.47165 5.55948 5.65525 5.71199 5.75917 5.80983 5.92567 6.20217 6.26896 6.53740 6.70861 6.73943 6.83171 6.99626 7.40192 7.51993 7.74557 7.85649 8.19275 8.43276 9.26723 9.87002 10.35909 11.33633 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.003953 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.815328 B = 7080.743794 C = 7662.617678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.599 5.599 3 C -0.252 4.252 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.911 5.911 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.145 3.855 12 C 0.090 3.910 13 N -0.599 5.599 14 C 0.057 3.943 15 C 0.495 3.505 16 O -0.515 6.515 17 C 0.107 3.893 18 F -0.189 7.189 19 C -0.160 4.160 20 C 0.061 3.939 21 O -0.380 6.380 22 C 0.063 3.937 23 C -0.181 4.181 24 H 0.029 0.971 25 H 0.046 0.954 26 H -0.006 1.006 27 H 0.252 0.748 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -19.705 1.994 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.322 5.322 3 C -0.381 4.381 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.557 5.557 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.016 3.984 12 C -0.034 4.034 13 N -0.332 5.332 14 C -0.086 4.086 15 C 0.279 3.721 16 O -0.390 6.390 17 C 0.086 3.914 18 F -0.170 7.170 19 C -0.198 4.198 20 C -0.016 4.016 21 O -0.299 6.299 22 C -0.014 4.014 23 C -0.219 4.219 24 H 0.048 0.952 25 H 0.065 0.935 26 H 0.013 0.987 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.114 0.886 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.392 -19.038 2.192 20.920 hybrid contribution -0.142 1.014 -0.153 1.035 sum 8.250 -18.024 2.038 19.927 Atomic orbital electron populations 1.20852 0.82286 0.95440 0.99437 1.43950 1.01989 1.00532 1.85769 1.19306 0.99303 0.85820 1.33719 0.91282 1.25113 0.97301 0.98804 0.98224 1.70058 1.15934 1.27522 1.42166 0.86146 0.79065 0.83847 0.77342 1.20214 1.21645 1.21587 1.21105 0.96074 0.88291 0.92934 1.22730 0.95547 0.82930 1.02178 1.48040 1.05175 1.08438 1.71590 1.22231 0.98476 0.86241 1.01671 1.20569 0.83043 0.90194 0.78281 1.90766 1.67444 1.32419 1.48392 1.21198 0.95339 0.89933 0.84953 1.92797 1.88965 1.79391 1.55836 1.22579 0.91474 0.99588 1.06196 1.22639 1.00872 0.90767 0.87337 1.87947 1.25277 1.74256 1.42396 1.22562 0.81643 0.94684 1.02488 1.22953 1.03455 0.98477 0.96969 0.95230 0.93487 0.98716 0.93808 0.93701 0.94555 0.91160 0.89436 0.92757 0.90755 0.89552 0.88083 0.88850 0.87847 0.92390 0.92276 0.87929 0.88552 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 8.99 59.85 0.54 4.63 16 2 N -0.60 -15.57 2.92 -181.12 -0.53 -16.10 16 3 C -0.25 -7.20 9.67 -15.06 -0.15 -7.35 16 4 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 5 C 0.00 0.10 5.24 -17.43 -0.09 0.01 16 6 N -0.91 -26.84 10.44 55.49 0.58 -26.26 16 7 Si 0.91 22.59 29.56 -169.99 -5.02 17.57 16 8 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 C 0.14 3.14 6.03 -4.04 -0.02 3.11 16 12 C 0.09 1.77 5.80 -4.04 -0.02 1.75 16 13 N -0.60 -9.52 2.87 -181.57 -0.52 -10.04 16 14 C 0.06 0.65 8.92 59.85 0.53 1.18 16 15 C 0.50 8.16 6.76 -10.98 -0.07 8.09 16 16 O -0.52 -10.58 15.48 5.56 0.09 -10.49 16 17 C 0.11 1.33 0.73 -91.59 -0.07 1.26 16 18 F -0.19 -2.32 13.67 2.25 0.03 -2.29 16 19 C -0.16 -1.85 4.60 -26.59 -0.12 -1.97 16 20 C 0.06 0.57 6.72 37.20 0.25 0.82 16 21 O -0.38 -3.93 10.77 -35.23 -0.38 -4.31 16 22 C 0.06 0.52 6.72 37.20 0.25 0.77 16 23 C -0.18 -1.73 4.88 -26.59 -0.13 -1.86 16 24 H 0.03 0.78 7.35 -51.93 -0.38 0.40 16 25 H 0.05 1.26 7.25 -51.92 -0.38 0.88 16 26 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.04 1.03 8.04 -51.93 -0.42 0.62 16 29 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 30 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.09 2.04 7.35 -51.93 -0.38 1.65 16 32 H 0.05 0.51 7.64 -51.93 -0.40 0.12 16 33 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 34 H 0.09 0.88 4.35 -51.93 -0.23 0.65 16 35 H 0.10 1.25 7.91 -51.93 -0.41 0.84 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 39 H 0.06 0.45 7.93 -51.92 -0.41 0.04 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.79 5.50 -51.93 -0.29 0.50 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -32.92 333.94 -6.42 -39.34 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.59 Total: -2.89 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 0.89 Total: 10.44 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.47 Total: -52.40 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.29 Total: -14.80 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.03 Total: -2.29 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.92 -6.42 -39.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698990309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.515 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds