Wall clock time and date at job start Fri Apr 10 2020 19:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99770 * 2 1 4 4 H 1.08004 * 119.99461 * 204.92685 * 3 2 1 5 5 C 1.38806 * 120.00351 * 24.92997 * 3 2 1 6 6 N 1.31622 * 119.99968 * 5.38286 * 5 3 2 7 7 Si 1.86801 * 120.00036 * 185.38619 * 5 3 2 8 8 H 1.48502 * 109.47260 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.46840 * 119.99816 * 7 5 3 10 10 H 1.48495 * 109.47411 * 239.99550 * 7 5 3 11 11 C 1.46499 * 120.00084 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46861 * 270.00253 * 11 2 1 13 13 N 1.46502 * 109.46505 * 179.97438 * 12 11 2 14 14 C 1.46497 * 120.00096 * 269.99585 * 13 12 11 15 15 C 1.34777 * 119.99881 * 90.00164 * 13 12 11 16 16 O 1.21280 * 120.00226 * 5.63930 * 15 13 12 17 17 C 1.50702 * 120.00053 * 185.63394 * 15 13 12 18 18 F 1.39901 * 109.61385 * 50.96624 * 17 15 13 19 19 C 1.53178 * 109.54683 * 171.17826 * 17 15 13 20 20 C 1.53086 * 109.16303 * 176.83987 * 19 17 15 21 21 O 1.42905 * 109.42367 * 302.40644 * 20 19 17 22 22 C 1.42894 * 114.10008 * 61.14955 * 21 20 19 23 23 C 1.53091 * 109.41825 * 298.84698 * 22 21 20 24 24 H 1.09002 * 109.47127 * 275.01575 * 1 2 3 25 25 H 1.09008 * 109.47103 * 35.01054 * 1 2 3 26 26 H 1.08998 * 109.47313 * 155.00993 * 1 2 3 27 27 H 0.97000 * 119.99648 * 179.97438 * 6 5 3 28 28 H 1.09003 * 109.47039 * 149.99937 * 11 2 1 29 29 H 1.08994 * 109.46859 * 30.00098 * 11 2 1 30 30 H 1.08995 * 109.46965 * 59.99968 * 12 11 2 31 31 H 1.09000 * 109.46832 * 299.99576 * 12 11 2 32 32 H 1.08996 * 109.47085 * 274.90380 * 14 13 12 33 33 H 1.09000 * 109.47098 * 34.90150 * 14 13 12 34 34 H 1.09001 * 109.47211 * 154.90890 * 14 13 12 35 35 H 1.08999 * 109.51363 * 56.93387 * 19 17 15 36 36 H 1.09007 * 109.52462 * 296.74679 * 19 17 15 37 37 H 1.09004 * 109.48031 * 182.41758 * 20 19 17 38 38 H 1.08994 * 109.48622 * 62.39551 * 20 19 17 39 39 H 1.09008 * 109.47653 * 58.82863 * 22 21 20 40 40 H 1.09004 * 109.48233 * 178.84512 * 22 21 20 41 41 H 1.09003 * 109.52066 * 177.50893 * 23 22 21 42 42 H 1.09000 * 109.52086 * 297.69722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1542 1.2295 -0.3942 5 6 1.5526 2.3321 0.5067 6 7 0.3716 2.2591 1.0831 7 14 2.4253 3.9781 0.3704 8 1 3.7293 3.7918 -0.3153 9 1 1.5854 4.9204 -0.4119 10 1 2.6547 4.5308 1.7295 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7097 1.4433 13 7 3.1844 -2.9788 1.4438 14 6 2.4514 -4.2472 1.4446 15 6 4.5322 -2.9793 1.4437 16 8 5.1390 -1.9343 1.5464 17 6 5.2852 -4.2784 1.3160 18 9 4.8009 -4.9959 0.2170 19 6 6.7769 -3.9893 1.1219 20 6 7.5432 -5.3136 1.0724 21 8 7.3015 -6.0477 2.2744 22 6 5.9296 -6.3876 2.4847 23 6 5.0984 -5.1064 2.5912 24 1 -0.3633 0.0898 1.0237 25 1 -0.3634 0.8418 -0.5896 26 1 -0.3634 -0.9314 -0.4341 27 1 -0.0454 3.0600 1.4375 28 1 3.1499 -1.1386 -0.5133 29 1 1.6084 -2.0285 -0.5129 30 1 1.5000 -1.8398 1.9571 31 1 3.0415 -0.9498 1.9568 32 1 2.1938 -4.5173 2.4686 33 1 1.5398 -4.1403 0.8567 34 1 3.0754 -5.0276 1.0090 35 1 7.1424 -3.3877 1.9541 36 1 6.9244 -3.4479 0.1874 37 1 8.6103 -5.1127 0.9774 38 1 7.2056 -5.8972 0.2160 39 1 5.5706 -6.9852 1.6468 40 1 5.8343 -6.9607 3.4071 41 1 4.0456 -5.3638 2.7074 42 1 5.4301 -4.5276 3.4532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698990309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:25 Heat of formation + Delta-G solvation = -116.748153 kcal Electronic energy + Delta-G solvation = -24418.726428 eV Core-core repulsion = 20734.768804 eV Total energy + Delta-G solvation = -3683.957625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.30788 -41.14871 -39.65078 -37.92534 -36.58084 -34.35518 -33.42420 -32.31318 -30.39822 -28.03432 -27.95228 -26.89940 -25.06003 -24.71185 -22.64700 -21.54232 -20.62118 -18.89359 -18.53637 -17.98905 -17.51655 -17.03071 -16.99719 -16.53292 -16.39177 -16.05543 -15.72714 -15.40999 -15.31450 -15.04352 -14.37848 -14.08417 -13.99324 -13.76484 -13.76155 -13.62671 -13.47056 -13.08952 -13.03251 -12.85799 -12.74045 -12.47631 -12.38582 -12.10953 -12.05492 -11.79234 -11.66307 -11.61263 -11.01761 -10.72750 -10.52243 -9.87705 -8.80464 -7.89455 -5.40383 1.24463 1.40907 1.42491 1.53105 1.76264 2.46211 2.83002 3.00002 3.14872 3.24918 3.30305 3.54762 3.72884 3.79369 4.04025 4.15874 4.24690 4.26686 4.37540 4.45447 4.48304 4.55688 4.56626 4.64743 4.72837 4.81668 4.83317 4.86554 4.93366 4.94542 5.06392 5.08876 5.32007 5.42350 5.58549 5.71303 6.14490 6.22752 6.29551 6.89558 7.11201 7.79400 8.21454 9.13274 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.003953 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.815328 B = 7080.743794 C = 7662.617678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.617 5.617 3 C -0.267 4.267 4 H 0.057 0.943 5 C -0.044 4.044 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.274 1.274 9 H -0.283 1.283 10 H -0.289 1.289 11 C 0.149 3.851 12 C 0.109 3.891 13 N -0.599 5.599 14 C 0.050 3.950 15 C 0.486 3.514 16 O -0.567 6.567 17 C 0.116 3.884 18 F -0.185 7.185 19 C -0.162 4.162 20 C 0.066 3.934 21 O -0.394 6.394 22 C 0.062 3.938 23 C -0.176 4.176 24 H 0.009 0.991 25 H 0.019 0.981 26 H 0.034 0.966 27 H 0.250 0.750 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -22.155 2.048 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.341 5.341 3 C -0.397 4.397 4 H 0.075 0.925 5 C -0.239 4.239 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.215 1.215 11 C 0.022 3.978 12 C -0.017 4.017 13 N -0.331 5.331 14 C -0.091 4.091 15 C 0.272 3.728 16 O -0.446 6.446 17 C 0.094 3.906 18 F -0.166 7.166 19 C -0.200 4.200 20 C -0.010 4.010 21 O -0.313 6.313 22 C -0.014 4.014 23 C -0.214 4.214 24 H 0.028 0.972 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.442 -21.557 2.240 23.259 hybrid contribution -0.168 1.707 -0.200 1.727 sum 8.275 -19.850 2.040 21.602 Atomic orbital electron populations 1.20628 0.81749 0.96232 0.98020 1.44129 1.02577 1.01189 1.86175 1.19444 0.99056 0.87456 1.33794 0.92549 1.25792 0.98074 1.01797 0.98251 1.70197 1.16860 1.28117 1.42813 0.85220 0.78164 0.80020 0.77180 1.19896 1.20902 1.21529 1.21116 0.95097 0.87422 0.94169 1.22109 0.95464 0.83998 1.00080 1.48055 1.05311 1.08690 1.71002 1.22558 0.98603 0.84097 1.03822 1.21430 0.83164 0.91264 0.76963 1.90739 1.68543 1.34722 1.50577 1.21107 0.94760 0.88188 0.86498 1.92803 1.88929 1.78943 1.55902 1.22599 0.91437 1.00893 1.05091 1.22677 1.01495 0.89305 0.87546 1.87940 1.26535 1.74122 1.42677 1.22768 0.80419 0.93956 1.04301 1.23000 1.05090 0.98545 0.94738 0.97217 0.96202 0.94789 0.94008 0.95838 0.91585 0.90179 0.93833 0.90110 0.89867 0.87899 0.89476 0.89918 0.86254 0.91356 0.91050 0.85469 0.86637 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.84 8.99 127.77 1.15 9.98 16 2 N -0.62 -32.37 2.92 -726.92 -2.13 -34.49 16 3 C -0.27 -15.65 9.67 84.03 0.81 -14.84 16 4 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 5 C -0.04 -2.54 5.24 84.86 0.44 -2.10 16 6 N -0.93 -55.83 10.44 21.65 0.23 -55.61 16 7 Si 0.97 47.19 29.56 68.60 2.03 49.22 16 8 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 11 C 0.15 6.48 6.03 86.38 0.52 7.00 16 12 C 0.11 4.30 5.80 86.38 0.50 4.80 16 13 N -0.60 -18.43 2.87 -846.76 -2.43 -20.87 16 14 C 0.05 0.98 8.92 127.77 1.14 2.12 16 15 C 0.49 16.02 6.76 87.66 0.59 16.62 16 16 O -0.57 -24.36 15.48 -3.03 -0.05 -24.41 16 17 C 0.12 2.71 0.73 -11.42 -0.01 2.70 16 18 F -0.19 -4.09 13.67 44.97 0.61 -3.48 16 19 C -0.16 -3.68 4.60 30.68 0.14 -3.53 16 20 C 0.07 1.11 6.72 72.01 0.48 1.60 16 21 O -0.39 -7.14 10.77 -148.98 -1.60 -8.75 16 22 C 0.06 0.82 6.72 72.01 0.48 1.30 16 23 C -0.18 -2.93 4.88 30.68 0.15 -2.78 16 24 H 0.01 0.51 7.35 -2.39 -0.02 0.49 16 25 H 0.02 1.05 7.25 -2.38 -0.02 1.04 16 26 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 27 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.02 1.10 8.04 -2.39 -0.02 1.08 16 29 H 0.07 2.45 7.86 -2.39 -0.02 2.43 16 30 H 0.08 3.00 8.07 -2.39 -0.02 2.98 16 31 H 0.04 2.11 7.35 -2.39 -0.02 2.09 16 32 H 0.08 1.21 7.64 -2.39 -0.02 1.19 16 33 H 0.08 1.53 8.11 -2.39 -0.02 1.51 16 34 H 0.10 1.71 4.35 -2.39 -0.01 1.70 16 35 H 0.09 2.21 7.91 -2.39 -0.02 2.19 16 36 H 0.08 2.01 8.14 -2.38 -0.02 2.00 16 37 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.07 1.02 7.93 -2.39 -0.02 1.00 16 39 H 0.07 0.81 7.93 -2.38 -0.02 0.79 16 40 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.12 1.45 5.50 -2.39 -0.01 1.44 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -73.38 333.94 4.07 -69.30 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.00 Total: 6.19 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: 6.41 Total: 22.89 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.33 Total: -110.97 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -1.65 Total: -33.15 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.61 Total: -3.48 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -73.38 4.07 -69.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698990309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.446 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds