Wall clock time and date at job start Fri Apr 10 2020 19:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36941 * 119.99885 * 2 1 4 4 H 1.08004 * 119.99550 * 202.34454 * 3 2 1 5 5 C 1.38806 * 120.00132 * 22.35045 * 3 2 1 6 6 N 1.31628 * 119.99820 * 11.33895 * 5 3 2 7 7 Si 1.86793 * 120.00078 * 191.34509 * 5 3 2 8 8 H 1.48502 * 109.47514 * 89.99794 * 7 5 3 9 9 H 1.48503 * 109.46997 * 209.99701 * 7 5 3 10 10 H 1.48497 * 109.47248 * 329.99444 * 7 5 3 11 11 C 1.46499 * 120.00329 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47045 * 270.00106 * 11 2 1 13 13 N 1.46507 * 109.47249 * 179.97438 * 12 11 2 14 14 C 1.34779 * 119.99987 * 180.27471 * 13 12 11 15 15 O 1.21552 * 120.00022 * 359.72169 * 14 13 12 16 16 C 1.47846 * 120.00011 * 179.72042 * 14 13 12 17 17 C 1.39590 * 120.18452 * 0.02562 * 16 14 13 18 18 C 1.37804 * 119.78570 * 179.97438 * 17 16 14 19 19 C 1.38663 * 120.41026 * 0.02562 * 18 17 16 20 20 C 1.38377 * 120.07934 * 359.97438 * 19 18 17 21 21 C 1.38235 * 119.99404 * 359.74325 * 20 19 18 22 22 C 1.51393 * 109.74411 * 180.02562 * 20 19 18 23 23 C 1.54334 * 105.17530 * 342.78189 * 22 20 19 24 24 C 1.51428 * 130.21933 * 180.02562 * 19 18 17 25 25 H 1.09003 * 109.47248 * 274.20376 * 1 2 3 26 26 H 1.08994 * 109.47320 * 34.21077 * 1 2 3 27 27 H 1.09006 * 109.47259 * 154.20827 * 1 2 3 28 28 H 0.96997 * 119.99574 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47737 * 149.99384 * 11 2 1 30 30 H 1.09005 * 109.47380 * 29.99850 * 11 2 1 31 31 H 1.08993 * 109.47618 * 59.99809 * 12 11 2 32 32 H 1.08998 * 109.47035 * 299.99444 * 12 11 2 33 33 H 0.96994 * 119.99812 * 359.97438 * 13 12 11 34 34 H 1.08006 * 120.10842 * 359.97438 * 17 16 14 35 35 H 1.08000 * 119.79427 * 179.97438 * 18 17 16 36 36 H 1.07994 * 119.94904 * 180.25531 * 21 20 19 37 37 H 1.08997 * 110.30438 * 223.86027 * 22 20 19 38 38 H 1.09001 * 110.38708 * 101.74781 * 22 20 19 39 39 H 1.08993 * 110.82257 * 268.18511 * 23 22 20 40 40 H 1.09000 * 110.98892 * 144.71259 * 23 22 20 41 41 H 1.08998 * 110.29627 * 316.11747 * 24 19 18 42 42 H 1.09003 * 110.29901 * 78.25613 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2210 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3840 2.2690 1.0937 7 14 2.3366 4.0047 0.1688 8 1 1.8678 4.5632 -1.1248 9 1 1.9680 4.9302 1.2701 10 1 3.8121 3.8419 0.1320 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1846 -2.9800 1.4412 14 6 3.5165 -3.5670 2.6082 15 8 3.2130 -3.0409 3.6611 16 6 4.2499 -4.8507 2.6076 17 6 4.6008 -5.4580 1.4008 18 6 5.2848 -6.6543 1.4098 19 6 5.6260 -7.2586 2.6103 20 6 5.2810 -6.6616 3.8100 21 6 4.6000 -5.4587 3.8126 22 6 5.7650 -7.5144 4.9635 23 6 6.0516 -8.9006 4.3486 24 6 6.3655 -8.5526 2.8781 25 1 -0.3634 0.0753 1.0249 26 1 -0.3633 0.8498 -0.5778 27 1 -0.3634 -0.9253 -0.4472 28 1 -0.0461 3.0774 1.4134 29 1 3.1499 -1.1382 -0.5144 30 1 1.6084 -2.0282 -0.5147 31 1 1.5002 -1.8416 1.9555 32 1 3.0416 -0.9516 1.9558 33 1 3.4265 -3.4000 0.6010 34 1 4.3372 -4.9918 0.4628 35 1 5.5560 -7.1245 0.4762 36 1 4.3347 -4.9913 4.7493 37 1 4.9912 -7.5921 5.7272 38 1 6.6758 -7.0943 5.3902 39 1 5.1738 -9.5433 4.4159 40 1 6.9110 -9.3700 4.8274 41 1 6.0019 -9.3396 2.2174 42 1 7.4378 -8.4102 2.7436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753072163.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:28 Heat of formation + Delta-G solvation = 4.685639 kcal Electronic energy + Delta-G solvation = -21756.035636 eV Core-core repulsion = 18508.113000 eV Total energy + Delta-G solvation = -3247.922635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.52735 -39.02897 -36.08367 -35.64603 -34.14931 -31.65321 -31.36946 -29.71822 -27.89450 -27.55392 -25.86235 -23.97030 -22.55106 -22.10281 -21.10567 -20.62868 -19.71236 -17.51766 -16.73500 -16.18049 -15.87665 -15.54014 -15.06660 -14.98675 -14.69285 -14.29592 -13.71508 -13.66609 -13.27917 -13.20097 -13.19374 -12.80808 -12.33018 -12.28591 -12.07247 -11.82233 -11.52062 -11.23825 -11.14548 -11.00570 -10.87367 -10.83880 -10.58400 -10.27791 -9.98712 -9.91562 -9.66776 -9.02692 -8.81390 -8.58584 -8.52470 -6.82240 -5.73940 -3.21433 0.75778 1.18729 2.93627 3.37170 3.42690 3.46058 3.47577 3.81578 4.09714 4.23469 4.50067 4.65086 4.70107 4.76985 4.92728 4.98159 5.13639 5.32294 5.36429 5.40824 5.45279 5.47743 5.58155 5.64374 5.75090 5.80642 5.88130 5.89864 5.97986 6.13587 6.23818 6.28114 6.37185 6.67988 6.70423 6.73769 6.74533 6.99063 7.37254 7.72335 7.80656 7.81622 8.37247 8.50262 9.21395 9.83258 10.31337 11.31142 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.035773 B = 0.002671 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.522919 B =10482.169271 C =10616.117651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.719 5.719 14 C 0.550 3.450 15 O -0.539 6.539 16 C -0.126 4.126 17 C -0.087 4.087 18 C -0.115 4.115 19 C -0.080 4.080 20 C -0.108 4.108 21 C -0.050 4.050 22 C -0.082 4.082 23 C -0.121 4.121 24 C -0.084 4.084 25 H 0.030 0.970 26 H 0.047 0.953 27 H -0.002 1.002 28 H 0.254 0.746 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.394 0.606 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 -23.320 1.725 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.370 5.370 14 C 0.336 3.664 15 O -0.417 6.417 16 C -0.129 4.129 17 C -0.106 4.106 18 C -0.133 4.133 19 C -0.080 4.080 20 C -0.108 4.108 21 C -0.069 4.069 22 C -0.119 4.119 23 C -0.158 4.158 24 C -0.121 4.121 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.621 -22.729 2.519 25.214 hybrid contribution 0.429 0.874 -0.437 1.067 sum 11.051 -21.855 2.083 24.578 Atomic orbital electron populations 1.20854 0.82124 0.95758 0.99512 1.43930 1.02087 1.00338 1.85543 1.19232 0.98156 0.85201 1.36355 0.91181 1.25079 0.97683 0.98725 0.98097 1.70074 1.17797 1.27242 1.39933 0.86200 0.78836 0.83846 0.77318 1.21429 1.21667 1.20443 1.20997 0.96375 0.88957 0.92140 1.22565 0.95758 0.82585 1.02223 1.46121 1.58065 1.25138 1.07659 1.18266 0.79470 0.84306 0.84381 1.90779 1.54750 1.64995 1.31204 1.19964 1.02532 0.96352 0.94055 1.21225 0.97058 0.95030 0.97239 1.20534 0.99899 0.95658 0.97238 1.20815 0.97249 0.96665 0.93310 1.20535 0.99191 0.95235 0.95822 1.20722 0.94877 0.93154 0.98118 1.21050 1.01368 0.93643 0.95847 1.22296 1.02043 0.96636 0.94839 1.21107 0.99876 0.94017 0.97122 0.95198 0.93397 0.98373 0.93614 0.93294 0.93960 0.92045 0.91157 0.77177 0.85239 0.85665 0.84853 0.90477 0.90056 0.90868 0.90446 0.90518 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 9.01 59.84 0.54 4.57 16 2 N -0.60 -15.05 2.93 -181.12 -0.53 -15.58 16 3 C -0.26 -7.17 9.67 -15.06 -0.15 -7.31 16 4 H 0.07 1.88 7.84 -52.48 -0.41 1.47 16 5 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 6 N -0.91 -26.75 10.59 55.49 0.59 -26.16 16 7 Si 0.91 22.09 29.57 -169.99 -5.03 17.06 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 C 0.14 2.87 5.82 -4.04 -0.02 2.85 16 12 C 0.09 1.89 6.00 -4.04 -0.02 1.86 16 13 N -0.72 -11.47 5.51 -61.25 -0.34 -11.81 16 14 C 0.55 9.48 7.77 -12.33 -0.10 9.38 16 15 O -0.54 -11.58 16.35 5.32 0.09 -11.50 16 16 C -0.13 -1.73 5.87 -105.02 -0.62 -2.35 16 17 C -0.09 -0.94 9.54 -39.24 -0.37 -1.31 16 18 C -0.12 -1.09 10.02 -39.58 -0.40 -1.48 16 19 C -0.08 -0.76 6.14 -104.06 -0.64 -1.40 16 20 C -0.11 -1.15 6.13 -104.23 -0.64 -1.79 16 21 C -0.05 -0.65 9.59 -39.14 -0.38 -1.03 16 22 C -0.08 -0.64 6.77 -26.84 -0.18 -0.82 16 23 C -0.12 -0.73 7.08 -25.33 -0.18 -0.91 16 24 C -0.08 -0.56 6.77 -26.82 -0.18 -0.74 16 25 H 0.03 0.81 7.42 -51.93 -0.39 0.42 16 26 H 0.05 1.27 7.19 -51.93 -0.37 0.90 16 27 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 30 H 0.04 0.74 7.86 -51.93 -0.41 0.34 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.39 4.84 6.51 -40.82 -0.27 4.58 16 34 H 0.13 1.10 6.41 -52.48 -0.34 0.77 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.13 1.81 7.64 -52.49 -0.40 1.41 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -33.29 345.83 -9.78 -43.07 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.35 Total: 0.21 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -3.42 Total: -0.50 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.28 Total: -53.55 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.29 -9.78 -43.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753072163.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.753 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds