Wall clock time and date at job start Fri Apr 10 2020 19:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46930 * 2 1 4 4 C 1.36933 * 119.99865 * 265.78638 * 3 2 1 5 5 H 1.08007 * 119.99956 * 146.21510 * 4 3 2 6 6 C 1.38816 * 120.00088 * 326.21394 * 4 3 2 7 7 N 1.31616 * 119.99781 * 337.68570 * 6 4 3 8 8 Si 1.86797 * 119.99982 * 157.69059 * 6 4 3 9 9 H 1.48494 * 109.47252 * 60.00182 * 8 6 4 10 10 H 1.48503 * 109.46759 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47244 * 299.99739 * 8 6 4 12 12 C 1.46500 * 120.00253 * 85.78109 * 3 2 1 13 13 C 1.53009 * 109.46679 * 90.00327 * 12 3 2 14 14 N 1.46506 * 109.46676 * 180.02562 * 13 12 3 15 15 C 1.34773 * 119.99306 * 179.97438 * 14 13 12 16 16 O 1.21276 * 120.00747 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99687 * 179.97438 * 15 14 13 18 18 F 1.39898 * 109.61632 * 310.22181 * 17 15 14 19 19 C 1.53182 * 109.54228 * 70.43071 * 17 15 14 20 20 C 1.53090 * 109.16039 * 176.83260 * 19 17 15 21 21 O 1.42897 * 109.42941 * 302.41012 * 20 19 17 22 22 C 1.42908 * 114.09694 * 61.15215 * 21 20 19 23 23 C 1.53089 * 109.41548 * 298.84441 * 22 21 20 24 24 H 1.09002 * 109.47398 * 60.00617 * 1 2 3 25 25 H 1.09004 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47379 * 299.99678 * 1 2 3 27 27 H 1.08997 * 109.47396 * 239.99910 * 2 1 3 28 28 H 1.08998 * 109.46976 * 119.99642 * 2 1 3 29 29 H 0.96997 * 120.00193 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47319 * 330.00499 * 12 3 2 31 31 H 1.08994 * 109.47457 * 210.00118 * 12 3 2 32 32 H 1.08990 * 109.47375 * 60.00109 * 13 12 3 33 33 H 1.08999 * 109.47038 * 299.99564 * 13 12 3 34 34 H 0.97000 * 119.99914 * 359.97438 * 14 13 12 35 35 H 1.09004 * 109.50908 * 56.93644 * 19 17 15 36 36 H 1.08994 * 109.53203 * 296.74907 * 19 17 15 37 37 H 1.09001 * 109.47758 * 182.41990 * 20 19 17 38 38 H 1.09001 * 109.47832 * 62.40507 * 20 19 17 39 39 H 1.09006 * 109.47736 * 58.82553 * 22 21 20 40 40 H 1.09001 * 109.47926 * 178.84711 * 22 21 20 41 41 H 1.08996 * 109.52252 * 177.51535 * 23 22 21 42 42 H 1.09008 * 109.51993 * 297.70532 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3286 1.9977 -1.1827 5 1 2.1594 3.0580 -1.2997 6 6 2.8607 1.2599 -2.2313 7 7 3.4697 0.1182 -1.9901 8 14 2.7125 1.8873 -3.9844 9 1 3.3850 3.2065 -4.0965 10 1 3.3577 0.9231 -4.9114 11 1 1.2778 2.0314 -4.3390 12 6 2.1745 2.1030 1.2653 13 6 3.5853 1.8747 1.8117 14 7 3.7413 2.5961 3.0774 15 6 4.9104 2.5395 3.7454 16 8 5.8332 1.8913 3.2992 17 6 5.0711 3.2820 5.0470 18 9 4.6470 4.6056 4.8882 19 6 4.2308 2.6016 6.1321 20 6 4.4619 3.3143 7.4672 21 8 5.8546 3.2871 7.7857 22 6 6.6848 3.9501 6.8300 23 6 6.5434 3.2629 5.4694 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8412 -0.3975 -2.7228 30 1 1.4424 1.7370 1.9851 31 1 2.0178 3.1685 1.0975 32 1 4.3173 2.2407 1.0920 33 1 3.7419 0.8092 1.9796 34 1 3.0031 3.1142 3.4344 35 1 4.5279 1.5566 6.2208 36 1 3.1755 2.6599 5.8658 37 1 3.8996 2.8077 8.2516 38 1 4.1267 4.3486 7.3898 39 1 6.3788 4.9928 6.7442 40 1 7.7239 3.9019 7.1557 41 1 7.1417 3.7940 4.7292 42 1 6.8873 2.2312 5.5450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753082317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:30 Heat of formation + Delta-G solvation = -118.450576 kcal Electronic energy + Delta-G solvation = -23767.690275 eV Core-core repulsion = 20083.658828 eV Total energy + Delta-G solvation = -3684.031447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.14018 -39.78482 -38.68930 -36.36452 -34.40209 -33.32167 -31.63152 -31.45526 -30.08634 -27.73826 -25.89993 -24.12082 -23.87658 -22.43199 -21.16948 -20.22880 -19.82036 -17.90682 -16.85413 -16.64285 -16.38933 -16.05061 -15.54758 -15.29170 -14.94059 -14.70632 -14.48189 -14.44241 -13.76954 -13.59174 -12.91443 -12.88273 -12.80940 -12.68447 -12.54042 -12.29466 -12.08019 -11.71090 -11.33789 -11.16423 -10.99678 -10.88741 -10.83247 -10.73150 -10.53600 -10.13813 -10.03272 -9.98496 -9.65500 -9.48763 -8.72265 -8.52629 -6.71752 -5.84509 -3.39241 2.56407 3.12753 3.35531 3.41619 3.43365 3.55643 4.01756 4.10912 4.41382 4.47099 4.51682 4.59559 4.88829 5.04952 5.15895 5.26737 5.28111 5.34251 5.37984 5.48864 5.59555 5.74260 5.86098 5.90599 5.95760 6.23371 6.27945 6.48931 6.57620 6.63683 6.73118 6.80926 6.83347 6.96521 7.21931 7.64292 7.70784 7.76518 8.27429 8.44330 9.12116 9.74591 10.29833 11.16514 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.003460 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.002804 B = 8089.598887 C = 8525.319908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 N -0.578 5.578 4 C -0.266 4.266 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.139 3.861 13 C 0.096 3.904 14 N -0.712 5.712 15 C 0.494 3.506 16 O -0.523 6.523 17 C 0.105 3.895 18 F -0.194 7.194 19 C -0.174 4.174 20 C 0.063 3.937 21 O -0.380 6.380 22 C 0.060 3.940 23 C -0.161 4.161 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.101 0.899 28 H 0.020 0.980 29 H 0.257 0.743 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.397 0.603 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 5.956 17.637 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 N -0.298 5.298 4 C -0.395 4.395 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.527 5.527 8 Si 0.730 3.270 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.209 1.209 12 C 0.011 3.989 13 C -0.029 4.029 14 N -0.362 5.362 15 C 0.276 3.724 16 O -0.399 6.399 17 C 0.083 3.917 18 F -0.174 7.174 19 C -0.212 4.212 20 C -0.014 4.014 21 O -0.299 6.299 22 C -0.016 4.016 23 C -0.199 4.199 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.118 0.882 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.231 0.769 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.175 5.282 17.292 18.119 hybrid contribution -0.510 0.687 -1.149 1.432 sum 0.665 5.969 16.144 17.224 Atomic orbital electron populations 1.22298 1.00714 0.98788 1.00403 1.20997 0.89890 0.86095 1.01956 1.43869 1.73555 1.12008 1.00378 1.19062 1.36859 0.94139 0.89449 0.91865 1.25128 0.96630 0.97813 0.99326 1.69976 1.35863 1.15742 1.31126 0.86410 0.77949 0.78186 0.84495 1.20692 1.21557 1.20852 1.21088 0.91554 0.96975 0.89251 1.22581 1.02147 0.96048 0.82156 1.46230 1.14021 1.51184 1.24770 1.20590 0.83649 0.82585 0.85564 1.90751 1.39645 1.41980 1.67533 1.21255 0.97181 0.78273 0.94948 1.92888 1.91449 1.36442 1.96657 1.22794 1.01178 1.02101 0.95102 1.22565 0.82883 1.00279 0.95699 1.87948 1.17045 1.77690 1.47196 1.22640 0.95944 0.95500 0.87553 1.22582 0.93411 1.05162 0.98726 0.93166 0.94602 0.94939 0.88191 0.96149 0.93330 0.94176 0.93303 0.90884 0.91984 0.76943 0.88461 0.88955 0.87888 0.92237 0.92398 0.87873 0.88970 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 37.16 0.38 -2.82 16 2 C 0.14 3.15 5.97 -4.04 -0.02 3.13 16 3 N -0.58 -13.89 2.45 -173.24 -0.43 -14.32 16 4 C -0.27 -7.08 9.49 -15.06 -0.14 -7.22 16 5 H 0.06 1.67 7.92 -52.48 -0.42 1.26 16 6 C 0.01 0.32 4.93 -17.43 -0.09 0.23 16 7 N -0.89 -25.19 11.32 55.49 0.63 -24.56 16 8 Si 0.90 21.34 29.61 -169.99 -5.03 16.31 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.14 2.74 5.80 -4.04 -0.02 2.72 16 13 C 0.10 1.89 6.00 -4.03 -0.02 1.87 16 14 N -0.71 -11.11 5.53 -60.29 -0.33 -11.45 16 15 C 0.49 7.98 6.81 -10.98 -0.07 7.90 16 16 O -0.52 -10.56 15.93 5.56 0.09 -10.47 16 17 C 0.11 1.29 1.07 -91.58 -0.10 1.19 16 18 F -0.19 -2.41 16.00 2.25 0.04 -2.38 16 19 C -0.17 -1.67 5.19 -26.59 -0.14 -1.81 16 20 C 0.06 0.53 6.72 37.20 0.25 0.78 16 21 O -0.38 -3.96 10.77 -35.23 -0.38 -4.34 16 22 C 0.06 0.56 6.72 37.20 0.25 0.81 16 23 C -0.16 -1.83 4.61 -26.59 -0.12 -1.95 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.10 2.63 5.32 -51.93 -0.28 2.36 16 28 H 0.02 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 30 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 32 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.40 4.99 8.44 -40.82 -0.34 4.64 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.48 7.93 -51.93 -0.41 0.07 16 39 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.10 1.22 7.89 -51.92 -0.41 0.81 16 LS Contribution 345.85 15.07 5.21 5.21 Total: -1.00 -31.04 345.85 -6.95 -37.99 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.89 Total: 3.18 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 0.15 Total: 4.84 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.13 Total: -50.33 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.29 Total: -14.82 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.04 -6.95 -37.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753082317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.465 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds