Wall clock time and date at job start Fri Apr 10 2020 19:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46930 * 2 1 4 4 C 1.36933 * 119.99865 * 265.78638 * 3 2 1 5 5 H 1.08007 * 119.99956 * 146.21510 * 4 3 2 6 6 C 1.38816 * 120.00088 * 326.21394 * 4 3 2 7 7 N 1.31616 * 119.99781 * 337.68570 * 6 4 3 8 8 Si 1.86797 * 119.99982 * 157.69059 * 6 4 3 9 9 H 1.48494 * 109.47252 * 60.00182 * 8 6 4 10 10 H 1.48503 * 109.46759 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47244 * 299.99739 * 8 6 4 12 12 C 1.46500 * 120.00253 * 85.78109 * 3 2 1 13 13 C 1.53009 * 109.46679 * 90.00327 * 12 3 2 14 14 N 1.46506 * 109.46676 * 180.02562 * 13 12 3 15 15 C 1.34773 * 119.99306 * 179.97438 * 14 13 12 16 16 O 1.21276 * 120.00747 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99687 * 179.97438 * 15 14 13 18 18 F 1.39898 * 109.61632 * 310.22181 * 17 15 14 19 19 C 1.53182 * 109.54228 * 70.43071 * 17 15 14 20 20 C 1.53090 * 109.16039 * 176.83260 * 19 17 15 21 21 O 1.42897 * 109.42941 * 302.41012 * 20 19 17 22 22 C 1.42908 * 114.09694 * 61.15215 * 21 20 19 23 23 C 1.53089 * 109.41548 * 298.84441 * 22 21 20 24 24 H 1.09002 * 109.47398 * 60.00617 * 1 2 3 25 25 H 1.09004 * 109.47177 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47379 * 299.99678 * 1 2 3 27 27 H 1.08997 * 109.47396 * 239.99910 * 2 1 3 28 28 H 1.08998 * 109.46976 * 119.99642 * 2 1 3 29 29 H 0.96997 * 120.00193 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47319 * 330.00499 * 12 3 2 31 31 H 1.08994 * 109.47457 * 210.00118 * 12 3 2 32 32 H 1.08990 * 109.47375 * 60.00109 * 13 12 3 33 33 H 1.08999 * 109.47038 * 299.99564 * 13 12 3 34 34 H 0.97000 * 119.99914 * 359.97438 * 14 13 12 35 35 H 1.09004 * 109.50908 * 56.93644 * 19 17 15 36 36 H 1.08994 * 109.53203 * 296.74907 * 19 17 15 37 37 H 1.09001 * 109.47758 * 182.41990 * 20 19 17 38 38 H 1.09001 * 109.47832 * 62.40507 * 20 19 17 39 39 H 1.09006 * 109.47736 * 58.82553 * 22 21 20 40 40 H 1.09001 * 109.47926 * 178.84711 * 22 21 20 41 41 H 1.08996 * 109.52252 * 177.51535 * 23 22 21 42 42 H 1.09008 * 109.51993 * 297.70532 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3286 1.9977 -1.1827 5 1 2.1594 3.0580 -1.2997 6 6 2.8607 1.2599 -2.2313 7 7 3.4697 0.1182 -1.9901 8 14 2.7125 1.8873 -3.9844 9 1 3.3850 3.2065 -4.0965 10 1 3.3577 0.9231 -4.9114 11 1 1.2778 2.0314 -4.3390 12 6 2.1745 2.1030 1.2653 13 6 3.5853 1.8747 1.8117 14 7 3.7413 2.5961 3.0774 15 6 4.9104 2.5395 3.7454 16 8 5.8332 1.8913 3.2992 17 6 5.0711 3.2820 5.0470 18 9 4.6470 4.6056 4.8882 19 6 4.2308 2.6016 6.1321 20 6 4.4619 3.3143 7.4672 21 8 5.8546 3.2871 7.7857 22 6 6.6848 3.9501 6.8300 23 6 6.5434 3.2629 5.4694 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8412 -0.3975 -2.7228 30 1 1.4424 1.7370 1.9851 31 1 2.0178 3.1685 1.0975 32 1 4.3173 2.2407 1.0920 33 1 3.7419 0.8092 1.9796 34 1 3.0031 3.1142 3.4344 35 1 4.5279 1.5566 6.2208 36 1 3.1755 2.6599 5.8658 37 1 3.8996 2.8077 8.2516 38 1 4.1267 4.3486 7.3898 39 1 6.3788 4.9928 6.7442 40 1 7.7239 3.9019 7.1557 41 1 7.1417 3.7940 4.7292 42 1 6.8873 2.2312 5.5450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753082317.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:30 Heat of formation + Delta-G solvation = -139.363116 kcal Electronic energy + Delta-G solvation = -23768.597111 eV Core-core repulsion = 20083.658828 eV Total energy + Delta-G solvation = -3684.938283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.15364 -41.01984 -39.61990 -38.12795 -35.97690 -34.27455 -33.49937 -32.33143 -31.68914 -29.41114 -27.08920 -25.73041 -24.81753 -23.99836 -22.34013 -21.91141 -21.00252 -19.15717 -18.54874 -17.84752 -17.35887 -16.99510 -16.77531 -16.66344 -16.24184 -16.12530 -15.83508 -15.63020 -15.43743 -15.14457 -14.45214 -14.02376 -13.97809 -13.79240 -13.63394 -13.61744 -13.44204 -13.23046 -12.87534 -12.65138 -12.51052 -12.46456 -12.31982 -11.99053 -11.83674 -11.73676 -11.68071 -11.47910 -11.07832 -10.58918 -10.53150 -10.22878 -8.68501 -7.87212 -5.45473 1.25177 1.46089 1.47925 1.54733 1.84910 2.50154 2.85949 3.07444 3.17842 3.22008 3.36707 3.56234 3.77234 3.79991 4.16247 4.20396 4.23782 4.29501 4.46023 4.53515 4.55401 4.56439 4.64418 4.72714 4.88283 4.90671 4.93137 4.94387 5.03830 5.05892 5.09921 5.15346 5.36372 5.51965 5.64942 5.86568 6.13844 6.33227 6.42502 6.98885 7.12772 7.81884 8.31042 9.10426 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.003460 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.002804 B = 8089.598887 C = 8525.319908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.133 3.867 3 N -0.595 5.595 4 C -0.272 4.272 5 H 0.063 0.937 6 C -0.038 4.038 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.275 1.275 12 C 0.143 3.857 13 C 0.118 3.882 14 N -0.699 5.699 15 C 0.489 3.511 16 O -0.569 6.569 17 C 0.114 3.886 18 F -0.191 7.191 19 C -0.170 4.170 20 C 0.061 3.939 21 O -0.394 6.394 22 C 0.065 3.935 23 C -0.162 4.162 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.251 0.749 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.038 0.962 34 H 0.416 0.584 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 7.213 19.507 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.008 3.992 3 N -0.316 5.316 4 C -0.402 4.402 5 H 0.081 0.919 6 C -0.236 4.236 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.201 1.201 12 C 0.016 3.984 13 C -0.009 4.009 14 N -0.350 5.350 15 C 0.273 3.727 16 O -0.448 6.448 17 C 0.092 3.908 18 F -0.172 7.172 19 C -0.208 4.208 20 C -0.015 4.015 21 O -0.312 6.312 22 C -0.011 4.011 23 C -0.201 4.201 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.253 0.747 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.139 0.861 41 H 0.103 0.897 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.389 6.579 19.203 20.302 hybrid contribution -0.027 0.311 -1.669 1.698 sum -0.416 6.891 17.534 18.844 Atomic orbital electron populations 1.22103 0.97658 1.00351 1.00599 1.20942 0.92247 0.85581 1.00447 1.44085 1.73890 1.12379 1.01203 1.19331 1.35821 0.94243 0.90796 0.91934 1.25811 0.96890 0.98221 1.02640 1.70123 1.37363 1.17066 1.31611 0.85481 0.77994 0.77469 0.80361 1.20284 1.22085 1.20107 1.21177 0.91788 0.97218 0.88250 1.22002 1.01135 0.94727 0.83006 1.45963 1.14909 1.50828 1.23312 1.21391 0.82731 0.81982 0.86551 1.90731 1.41120 1.44021 1.68955 1.21186 0.98546 0.77980 0.93082 1.92896 1.91484 1.36229 1.96589 1.22858 1.01660 1.01600 0.94727 1.22754 0.82284 1.00983 0.95481 1.87940 1.18038 1.77877 1.47394 1.22692 0.97035 0.95402 0.86002 1.22614 0.92661 1.04737 1.00062 0.94682 0.92406 0.92855 0.91626 0.95840 0.93936 0.90883 0.92286 0.95325 0.94379 0.74679 0.88936 0.87009 0.85506 0.91304 0.91525 0.86127 0.89746 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 10.24 71.98 0.74 -4.79 16 2 C 0.13 6.14 5.97 86.38 0.52 6.66 16 3 N -0.59 -28.50 2.45 -702.00 -1.72 -30.22 16 4 C -0.27 -14.56 9.49 84.04 0.80 -13.76 16 5 H 0.06 3.30 7.92 -2.91 -0.02 3.28 16 6 C -0.04 -2.11 4.93 84.86 0.42 -1.69 16 7 N -0.92 -53.82 11.32 21.65 0.25 -53.58 16 8 Si 0.96 44.41 29.61 68.60 2.03 46.45 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 C 0.14 5.44 5.80 86.38 0.50 5.94 16 13 C 0.12 4.72 6.00 86.38 0.52 5.24 16 14 N -0.70 -21.26 5.53 -463.05 -2.56 -23.82 16 15 C 0.49 15.74 6.81 87.66 0.60 16.34 16 16 O -0.57 -23.76 15.93 -3.02 -0.05 -23.81 16 17 C 0.11 2.63 1.07 -11.42 -0.01 2.62 16 18 F -0.19 -4.35 16.00 44.97 0.72 -3.63 16 19 C -0.17 -2.86 5.19 30.69 0.16 -2.71 16 20 C 0.06 0.85 6.72 72.01 0.48 1.34 16 21 O -0.39 -7.21 10.77 -148.98 -1.60 -8.82 16 22 C 0.07 1.09 6.72 72.01 0.48 1.57 16 23 C -0.16 -3.59 4.61 30.68 0.14 -3.44 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 3.54 5.32 -2.39 -0.01 3.53 16 28 H 0.02 1.03 8.10 -2.39 -0.02 1.01 16 29 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.07 2.32 8.07 -2.39 -0.02 2.31 16 31 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 32 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.42 9.49 8.44 -92.71 -0.78 8.70 16 35 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 0.86 7.93 -2.39 -0.02 0.84 16 39 H 0.07 1.01 7.93 -2.38 -0.02 0.99 16 40 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.09 2.18 7.89 -2.38 -0.02 2.16 16 Total: -1.00 -68.95 345.85 2.63 -66.33 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.22 Total: 17.80 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 5.34 Total: 13.31 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -4.04 Total: -107.62 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -1.65 Total: -32.63 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.72 Total: -3.63 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.95 2.63 -66.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753082317.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.036 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds