Wall clock time and date at job start Fri Apr 10 2020 19:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46498 * 120.00188 * 2 1 4 4 C 1.53003 * 109.46837 * 90.00268 * 3 2 1 5 5 H 1.08998 * 109.46970 * 60.00222 * 4 3 2 6 6 O 1.42898 * 109.47398 * 300.00159 * 4 3 2 7 7 C 1.53006 * 109.46937 * 179.97438 * 4 3 2 8 8 N 1.46503 * 109.46950 * 184.99731 * 7 4 3 9 9 C 1.36939 * 119.99917 * 179.97438 * 8 7 4 10 10 H 1.07997 * 119.99997 * 0.02562 * 9 8 7 11 11 C 1.38809 * 119.99915 * 180.02562 * 9 8 7 12 12 N 1.31627 * 120.00201 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00234 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46816 * 89.99605 * 13 11 9 15 15 H 1.48494 * 109.47087 * 209.99986 * 13 11 9 16 16 H 1.48501 * 109.46728 * 330.00146 * 13 11 9 17 17 C 1.34778 * 119.99811 * 180.02562 * 2 1 3 18 18 O 1.21287 * 119.99630 * 184.99642 * 17 2 1 19 19 C 1.50698 * 120.00339 * 4.99154 * 17 2 1 20 20 C 1.53003 * 115.54655 * 293.08678 * 19 17 2 21 21 C 1.52999 * 109.47301 * 303.96774 * 20 19 17 22 22 F 1.39905 * 109.47217 * 185.08728 * 21 20 19 23 23 C 1.52993 * 117.50059 * 147.41684 * 19 17 2 24 24 C 1.52992 * 117.50045 * 78.75323 * 19 17 2 25 25 H 1.09004 * 109.47144 * 266.13282 * 1 2 3 26 26 H 1.09005 * 109.47185 * 26.13010 * 1 2 3 27 27 H 1.08995 * 109.47752 * 146.13250 * 1 2 3 28 28 H 1.08999 * 109.47318 * 210.00195 * 3 2 1 29 29 H 1.08998 * 109.47159 * 330.00606 * 3 2 1 30 30 H 0.96703 * 113.99629 * 300.00509 * 6 4 3 31 31 H 1.08997 * 109.47228 * 304.99941 * 7 4 3 32 32 H 1.08998 * 109.47093 * 65.00460 * 7 4 3 33 33 H 0.97002 * 119.99937 * 0.02562 * 8 7 4 34 34 H 0.96996 * 119.99984 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.47295 * 63.96868 * 20 19 17 36 36 H 1.08997 * 109.46939 * 183.96899 * 20 19 17 37 37 H 1.09001 * 109.47028 * 305.09081 * 21 20 19 38 38 H 1.08997 * 109.47121 * 65.08884 * 21 20 19 39 39 H 1.08999 * 117.50024 * 0.02562 * 23 19 17 40 40 H 1.09005 * 117.50143 * 145.02187 * 23 19 17 41 41 H 1.08998 * 117.50425 * 214.98151 * 24 19 17 42 42 H 1.09004 * 117.50013 * 359.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 1 3.0416 0.9506 1.9563 6 8 1.2039 1.8811 2.1163 7 6 3.2181 3.0350 1.4426 8 7 3.5665 3.3976 2.8186 9 6 4.2595 4.5521 3.0679 10 1 4.5489 5.1954 2.2502 11 6 4.5901 4.8954 4.3716 12 7 4.2378 4.1110 5.3682 13 14 5.5348 6.4706 4.7118 14 1 4.5775 7.5858 4.9243 15 1 6.3682 6.2950 5.9282 16 1 6.4095 6.7831 3.5532 17 6 2.1388 -1.1672 -0.0005 18 8 3.3482 -1.1692 0.0910 19 6 1.3896 -2.4698 -0.1147 20 6 0.4980 -2.8248 1.0770 21 6 1.3363 -2.8323 2.3569 22 9 0.5488 -3.2690 3.4276 23 6 2.0819 -3.6211 -0.8467 24 6 0.9099 -2.8894 -1.5055 25 1 -0.3634 -0.0693 1.0254 26 1 -0.3634 0.9227 -0.4526 27 1 -0.3634 -0.8532 -0.5726 28 1 3.1498 1.1384 -0.5139 29 1 1.6084 2.0284 -0.5137 30 1 0.6268 2.5438 1.7127 31 1 4.1288 2.9283 0.8533 32 1 2.5936 3.8156 1.0083 33 1 3.3069 2.8195 3.5530 34 1 4.4692 4.3507 6.2792 35 1 -0.2978 -2.0856 1.1683 36 1 0.0614 -3.8115 0.9229 37 1 2.1847 -3.5051 2.2316 38 1 1.6987 -1.8245 2.5597 39 1 3.0794 -3.4366 -1.2454 40 1 1.9018 -4.6316 -0.4797 41 1 -0.0406 -3.4186 -1.5717 42 1 1.1358 -2.2230 -2.3381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755784104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:37 Heat of formation + Delta-G solvation = -128.122221 kcal Electronic energy + Delta-G solvation = -23816.353103 eV Core-core repulsion = 20131.902262 eV Total energy + Delta-G solvation = -3684.450841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.67250 -41.52875 -39.14905 -37.79003 -36.44256 -35.80822 -33.27080 -32.30252 -31.04077 -27.93348 -27.32257 -25.42561 -24.52688 -23.40356 -23.04022 -22.50833 -19.76129 -19.26823 -18.00716 -17.76771 -17.31842 -17.22563 -16.81033 -16.66430 -16.44212 -16.14554 -15.81459 -15.52957 -15.26351 -14.89807 -14.66055 -14.24649 -13.99023 -13.78302 -13.58501 -13.31875 -13.20720 -13.01546 -12.76713 -12.69180 -12.48075 -12.36934 -12.19023 -12.06768 -11.88472 -11.84653 -11.51131 -11.28591 -11.01088 -10.97778 -10.71439 -9.59006 -9.05150 -7.97109 -5.28004 1.44566 1.47471 1.47873 1.56369 1.92569 2.53575 2.63721 3.32182 3.34111 3.47105 3.49425 3.69572 3.72402 3.76606 3.91681 3.97828 4.09589 4.15198 4.18892 4.33724 4.44204 4.47427 4.53708 4.65866 4.72286 4.74845 4.79504 4.88690 4.90408 4.95435 4.99418 5.09064 5.19446 5.21557 5.43660 5.49123 6.23076 6.34742 6.87723 7.11013 7.29174 8.04629 8.27605 9.26507 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.003603 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.598815 B = 7769.399246 C = 8273.172822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.598 5.598 3 C 0.096 3.904 4 C 0.104 3.896 5 H 0.058 0.942 6 O -0.561 6.561 7 C 0.124 3.876 8 N -0.743 5.743 9 C -0.251 4.251 10 H 0.079 0.921 11 C -0.078 4.078 12 N -0.972 5.972 13 Si 0.979 3.021 14 H -0.283 1.283 15 H -0.296 1.296 16 H -0.267 1.267 17 C 0.536 3.464 18 O -0.585 6.585 19 C -0.171 4.171 20 C -0.099 4.099 21 C 0.058 3.942 22 F -0.228 7.228 23 C -0.151 4.151 24 C -0.123 4.123 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.384 0.616 31 H 0.024 0.976 32 H 0.043 0.957 33 H 0.372 0.628 34 H 0.251 0.749 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.892 -15.297 -18.145 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.329 5.329 3 C -0.028 4.028 4 C 0.043 3.957 5 H 0.076 0.924 6 O -0.367 6.367 7 C -0.003 4.003 8 N -0.385 5.385 9 C -0.382 4.382 10 H 0.097 0.903 11 C -0.270 4.270 12 N -0.622 5.622 13 Si 0.807 3.193 14 H -0.210 1.210 15 H -0.223 1.223 16 H -0.192 1.192 17 C 0.325 3.675 18 O -0.465 6.465 19 C -0.174 4.174 20 C -0.136 4.136 21 C 0.003 3.997 22 F -0.209 7.209 23 C -0.188 4.188 24 C -0.160 4.160 25 H 0.075 0.925 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.233 0.767 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.204 0.796 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.969 -15.589 -17.766 26.960 hybrid contribution 0.760 1.236 0.854 1.683 sum -12.209 -14.353 -16.913 25.320 Atomic orbital electron populations 1.22177 0.76781 1.05198 1.02678 1.47737 1.08649 1.04668 1.71811 1.22090 0.98954 0.86177 0.95566 1.22167 0.84943 0.95318 0.93251 0.92417 1.86597 1.28682 1.63510 1.57950 1.21448 0.97031 0.95016 0.86798 1.42488 1.67232 1.25480 1.03345 1.19695 1.26914 0.99027 0.92584 0.90266 1.25680 1.03286 1.02522 0.95515 1.69868 1.53329 1.40213 0.98794 0.85060 0.78056 0.78939 0.77202 1.20951 1.22274 1.19218 1.20238 0.86786 0.85536 0.74937 1.90712 1.16481 1.87856 1.51460 1.21174 1.05077 0.93734 0.97400 1.21698 0.96954 1.05512 0.89438 1.22011 0.93605 0.99960 0.84128 1.92740 1.77284 1.91616 1.59283 1.23160 0.97865 0.96189 1.01623 1.23242 1.00193 1.01703 0.90885 0.92506 0.88707 0.88725 0.90446 0.86200 0.76739 0.95827 0.93947 0.79630 0.94001 0.88658 0.86898 0.90106 0.93632 0.89726 0.85721 0.84394 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.54 127.77 1.09 2.07 16 2 N -0.60 -13.10 2.80 -846.77 -2.37 -15.47 16 3 C 0.10 2.38 5.11 86.38 0.44 2.82 16 4 C 0.10 3.55 3.27 30.60 0.10 3.65 16 5 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 6 O -0.56 -18.27 12.63 -148.98 -1.88 -20.16 16 7 C 0.12 5.04 5.90 86.38 0.51 5.55 16 8 N -0.74 -40.11 5.55 -343.45 -1.91 -42.02 16 9 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 10 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 11 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 12 N -0.97 -62.55 13.06 21.65 0.28 -62.27 16 13 Si 0.98 47.43 29.55 68.60 2.03 49.46 16 14 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 15 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 C 0.54 13.88 6.03 87.66 0.53 14.41 16 18 O -0.58 -21.08 16.36 -3.05 -0.05 -21.13 16 19 C -0.17 -2.87 0.91 -52.93 -0.05 -2.92 16 20 C -0.10 -1.51 5.30 30.59 0.16 -1.35 16 21 C 0.06 1.35 7.22 71.98 0.52 1.87 16 22 F -0.23 -6.10 17.36 44.97 0.78 -5.32 16 23 C -0.15 -2.19 9.75 30.62 0.30 -1.89 16 24 C -0.12 -1.20 9.09 30.62 0.28 -0.92 16 25 H 0.06 0.89 7.41 -2.38 -0.02 0.87 16 26 H 0.09 0.85 7.85 -2.38 -0.02 0.83 16 27 H 0.09 0.81 5.88 -2.39 -0.01 0.80 16 28 H 0.08 2.18 7.50 -2.39 -0.02 2.16 16 29 H 0.12 2.04 7.87 -2.39 -0.02 2.02 16 30 H 0.38 9.16 9.05 -74.06 -0.67 8.49 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.37 22.15 7.67 -92.71 -0.71 21.44 16 34 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.10 1.31 5.76 -2.39 -0.01 1.29 16 36 H 0.11 1.15 8.10 -2.39 -0.02 1.13 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.34 7.65 -2.39 -0.02 1.32 16 39 H 0.08 1.60 8.02 -2.39 -0.02 1.59 16 40 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -80.49 351.12 1.73 -78.77 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.35 Total: 32.77 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.19 Total: 5.36 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -3.99 Total: -119.75 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -1.93 Total: -41.28 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.78 Total: -5.32 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -80.49 1.73 -78.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755784104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.357 kcal (2) G-P(sol) polarization free energy of solvation -80.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds