Wall clock time and date at job start Fri Apr 10 2020 19:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30245 * 126.17459 * 2 1 4 4 N 1.39828 * 110.09595 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.39016 * 179.97438 * 4 3 2 6 6 C 1.36831 * 109.22535 * 0.02562 * 4 3 2 7 7 N 1.32764 * 133.57980 * 180.35142 * 6 4 3 8 8 C 1.31500 * 121.47432 * 180.17131 * 7 6 4 9 9 C 1.38809 * 121.58898 * 359.42489 * 8 7 6 10 10 C 1.50697 * 120.17743 * 180.25924 * 9 8 7 11 11 N 1.46899 * 109.47116 * 90.00519 * 10 9 8 12 12 C 1.46895 * 110.99723 * 293.95251 * 11 10 9 13 13 C 1.46894 * 111.00099 * 169.99792 * 11 10 9 14 14 H 1.08996 * 109.47273 * 310.00122 * 13 11 10 15 15 C 1.53004 * 109.47059 * 70.00010 * 13 11 10 16 16 C 1.50705 * 109.47223 * 189.99551 * 13 11 10 17 17 H 1.07995 * 120.00002 * 0.02562 * 16 13 11 18 18 C 1.37882 * 119.99981 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99809 * 0.02562 * 18 16 13 20 20 Si 1.86790 * 119.99766 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.47482 * 90.00000 * 20 18 16 22 22 H 1.48506 * 109.47124 * 209.99933 * 20 18 16 23 23 H 1.48497 * 109.47365 * 329.99824 * 20 18 16 24 24 C 1.37024 * 119.64228 * 0.28199 * 9 8 7 25 25 C 1.39989 * 118.16114 * 0.02562 * 24 9 8 26 26 H 1.08999 * 109.47134 * 269.98001 * 1 2 3 27 27 H 1.08996 * 109.46607 * 29.98083 * 1 2 3 28 28 H 1.09001 * 109.46513 * 149.97524 * 1 2 3 29 29 H 1.09005 * 109.47132 * 270.00447 * 5 4 3 30 30 H 1.09003 * 109.46737 * 29.99821 * 5 4 3 31 31 H 1.09000 * 109.47164 * 149.99965 * 5 4 3 32 32 H 1.08002 * 119.20937 * 179.71226 * 8 7 6 33 33 H 1.09006 * 109.46867 * 210.00068 * 10 9 8 34 34 H 1.08996 * 109.46997 * 330.00121 * 10 9 8 35 35 H 1.09004 * 109.47750 * 59.99842 * 12 11 10 36 36 H 1.09001 * 109.47433 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47295 * 299.99911 * 12 11 10 38 38 H 1.09004 * 109.46978 * 299.99675 * 15 13 11 39 39 H 1.09002 * 109.47399 * 60.00055 * 15 13 11 40 40 H 1.09003 * 109.47012 * 180.02562 * 15 13 11 41 41 H 0.97001 * 119.99360 * 180.02562 * 19 18 16 42 42 H 1.07999 * 120.91711 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2757 1.0514 0.0000 4 7 3.6193 0.6641 -0.0006 5 6 4.7653 1.5767 -0.0013 6 6 3.6944 -0.7021 -0.0016 7 7 4.7050 -1.5632 0.0035 8 6 4.5002 -2.8621 -0.0024 9 6 3.2190 -3.3963 -0.0023 10 6 3.0211 -4.8902 -0.0033 11 7 2.9572 -5.3766 1.3814 12 6 4.2457 -5.1952 2.0630 13 6 2.5308 -6.7816 1.4267 14 1 1.6310 -6.9078 0.8247 15 6 3.6450 -7.6708 0.8711 16 6 2.2402 -7.1726 2.8528 17 1 2.3599 -6.4496 3.6461 18 6 1.8216 -8.4535 3.1448 19 7 1.6764 -9.3341 2.1788 20 14 1.4607 -8.9379 4.9123 21 1 0.0328 -8.6680 5.2180 22 1 1.7414 -10.3846 5.0963 23 1 2.3211 -8.1465 5.8281 24 6 2.1352 -2.5579 -0.0018 25 6 2.3678 -1.1774 -0.0020 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3632 0.8901 -0.5135 28 1 -0.3632 -0.8898 -0.5142 29 1 5.0490 1.8029 -1.0292 30 1 4.4953 2.4993 0.5125 31 1 5.6042 1.1069 0.5122 32 1 5.3494 -3.5296 -0.0027 33 1 2.0909 -5.1331 -0.5170 34 1 3.8555 -5.3669 -0.5177 35 1 4.5041 -4.1363 2.0761 36 1 4.1707 -5.5639 3.0860 37 1 5.0188 -5.7512 1.5326 38 1 3.8553 -7.3880 -0.1605 39 1 4.5450 -7.5446 1.4730 40 1 3.3285 -8.7133 0.9043 41 1 1.3815 -10.2350 2.3843 42 1 1.1294 -2.9512 -0.0022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161810449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:06 Heat of formation + Delta-G solvation = 108.176942 kcal Electronic energy + Delta-G solvation = -22645.720059 eV Core-core repulsion = 19434.577894 eV Total energy + Delta-G solvation = -3211.142165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52548 -38.61532 -36.86137 -34.41592 -33.07681 -31.80706 -30.45760 -29.61891 -28.43004 -26.92941 -25.43127 -25.23206 -23.81802 -23.40979 -21.35934 -19.82356 -19.19642 -17.39844 -16.89283 -16.16523 -15.94044 -15.82233 -15.19404 -14.36745 -14.11611 -13.74641 -13.70020 -13.48473 -13.33364 -13.16084 -12.97960 -12.83948 -12.50682 -12.41879 -12.01860 -11.78349 -11.54530 -11.11560 -11.06818 -10.89118 -10.77829 -10.64029 -10.52963 -10.18452 -10.05275 -9.85315 -9.33789 -8.91777 -8.86468 -8.39009 -8.04623 -7.17546 -6.01871 -4.05298 0.85318 1.42384 2.14060 2.40059 3.31045 3.37565 3.41167 3.84528 4.09917 4.30597 4.41967 4.50991 4.86527 5.03642 5.09195 5.10519 5.19634 5.30124 5.30706 5.34015 5.40910 5.44537 5.59427 5.73658 5.79068 5.91708 6.09129 6.22147 6.32485 6.33768 6.56348 6.62341 6.66862 6.80543 6.86186 6.89034 7.09721 7.43160 7.47390 7.69571 7.82890 7.97480 8.10380 8.35905 8.56877 9.00803 9.59846 11.05124 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.024292 B = 0.003613 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.355340 B = 7748.391092 C = 8159.746299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.109 3.891 3 N -0.250 5.250 4 N -0.402 5.402 5 C 0.117 3.883 6 C 0.306 3.694 7 N -0.508 5.508 8 C 0.178 3.822 9 C -0.154 4.154 10 C 0.099 3.901 11 N -0.529 5.529 12 C 0.032 3.968 13 C 0.211 3.789 14 H 0.039 0.961 15 C -0.173 4.173 16 C -0.498 4.498 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.022 3.978 25 C -0.223 4.223 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.018 0.982 38 H 0.007 0.993 39 H 0.032 0.968 40 H 0.088 0.912 41 H 0.260 0.740 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 16.368 -6.454 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 N -0.065 5.065 4 N -0.193 5.193 5 C -0.024 4.024 6 C 0.068 3.932 7 N -0.223 5.223 8 C 0.009 3.991 9 C -0.158 4.158 10 C -0.030 4.030 11 N -0.253 5.253 12 C -0.116 4.116 13 C 0.105 3.895 14 H 0.057 0.943 15 C -0.232 4.232 16 C -0.536 4.536 17 H 0.080 0.920 18 C -0.143 4.143 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.007 4.007 25 C -0.232 4.232 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.178 0.822 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.980 18.267 -6.215 19.524 hybrid contribution -0.157 -1.960 0.549 2.042 sum 2.823 16.307 -5.666 17.492 Atomic orbital electron populations 1.20272 0.85402 1.03874 1.03762 1.23476 0.96709 0.88558 0.98145 1.76592 0.86499 1.23031 1.20343 1.47887 1.04188 1.01606 1.65624 1.21710 0.84910 0.93038 1.02790 1.18972 0.90620 0.86008 0.97604 1.66760 1.33296 1.02957 1.19256 1.22656 0.96635 0.89025 0.90747 1.20469 0.93351 0.97773 1.04226 1.20882 1.01249 0.88145 0.92716 1.62396 1.27856 1.23706 1.11328 1.22278 0.90397 0.98474 1.00468 1.19336 0.93190 0.79829 0.97156 0.94269 1.22416 0.99614 1.05639 0.95536 1.21100 1.44126 0.96012 0.92378 0.91990 1.24916 0.95655 0.96480 0.97224 1.69882 1.47506 1.04688 1.31385 0.86531 0.78657 0.77443 0.84958 1.20704 1.21404 1.19979 1.20651 1.00012 0.89394 0.90611 1.20385 0.93429 0.94839 1.14597 0.89665 0.90361 0.89713 0.91556 0.89786 0.89419 0.82202 0.90356 0.94375 0.94001 0.90827 0.96310 0.97402 0.94941 0.89332 0.93022 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.48 36.00 0.38 -0.29 16 2 C 0.11 1.45 7.44 -80.22 -0.60 0.85 16 3 N -0.25 -3.55 12.40 34.82 0.43 -3.12 16 4 N -0.40 -5.70 4.04 -67.20 -0.27 -5.98 16 5 C 0.12 1.16 11.44 59.85 0.68 1.84 16 6 C 0.31 4.81 7.97 -156.10 -1.24 3.57 16 7 N -0.51 -7.95 10.40 -12.34 -0.13 -8.08 16 8 C 0.18 2.62 9.10 -17.48 -0.16 2.46 16 9 C -0.15 -2.34 4.86 -104.85 -0.51 -2.85 16 10 C 0.10 1.65 4.69 -4.98 -0.02 1.63 16 11 N -0.53 -10.72 4.69 -237.73 -1.12 -11.84 16 12 C 0.03 0.61 8.26 60.06 0.50 1.11 16 13 C 0.21 5.04 2.31 -68.86 -0.16 4.88 16 14 H 0.04 1.02 7.93 -51.93 -0.41 0.61 16 15 C -0.17 -3.98 8.22 37.16 0.31 -3.68 16 16 C -0.50 -13.22 7.91 -34.44 -0.27 -13.49 16 17 H 0.06 1.67 7.12 -52.49 -0.37 1.30 16 18 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 19 N -0.90 -24.87 11.32 55.43 0.63 -24.25 16 20 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.02 0.32 9.83 -39.37 -0.39 -0.06 16 25 C -0.22 -3.33 6.35 -105.18 -0.67 -4.00 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.16 2.05 8.02 -52.49 -0.42 1.63 16 33 H 0.08 1.28 7.88 -51.93 -0.41 0.88 16 34 H 0.04 0.62 7.01 -51.93 -0.36 0.26 16 35 H 0.04 0.72 6.17 -51.93 -0.32 0.40 16 36 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 37 H 0.02 0.34 6.46 -51.93 -0.34 0.00 16 38 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 39 H 0.03 0.73 6.42 -51.93 -0.33 0.39 16 40 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 41 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 339.82 15.07 5.12 5.12 Total: -1.00 -30.67 339.82 -8.69 -39.36 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.09 Total: -0.67 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.25 Total: -6.56 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.46 Total: -53.26 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.67 -8.69 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161810449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.536 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds