Wall clock time and date at job start Fri Apr 10 2020 19:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99790 * 2 1 4 4 H 1.48505 * 109.47033 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47450 * 300.00055 * 3 2 1 6 6 H 1.48503 * 109.47216 * 60.00032 * 3 2 1 7 7 C 1.37873 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46802 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47256 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47499 * 180.02562 * 11 10 9 13 13 C 1.44187 * 111.00031 * 303.48300 * 12 11 10 14 14 C 1.54317 * 112.61931 * 217.52783 * 13 12 11 15 15 C 1.54318 * 111.72014 * 318.91301 * 14 13 12 16 16 N 1.44176 * 112.61572 * 318.92709 * 15 14 13 17 17 C 1.39678 * 110.99850 * 217.52585 * 16 15 14 18 18 C 1.38916 * 120.07348 * 94.62887 * 17 16 15 19 19 C 1.38098 * 119.92151 * 179.77012 * 18 17 16 20 20 C 1.38284 * 120.07899 * 0.49929 * 19 18 17 21 21 C 1.38286 * 120.14815 * 359.75497 * 20 19 18 22 22 C 1.38106 * 120.07312 * 359.97438 * 21 20 19 23 23 C 1.48073 * 109.89911 * 94.35124 * 16 15 14 24 24 C 1.46088 * 112.16006 * 279.63536 * 23 16 15 25 25 H 0.97001 * 119.99610 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47144 * 60.01220 * 9 7 2 27 27 H 1.08997 * 109.47843 * 300.00284 * 9 7 2 28 28 H 1.08997 * 109.47384 * 60.00044 * 10 9 7 29 29 H 1.09004 * 109.47253 * 299.99985 * 10 9 7 30 30 H 1.09007 * 109.47260 * 59.99746 * 11 10 9 31 31 H 1.09005 * 109.47201 * 300.00431 * 11 10 9 32 32 H 1.09000 * 108.85138 * 96.71424 * 13 12 11 33 33 H 1.09000 * 108.76568 * 338.27909 * 13 12 11 34 34 H 1.09005 * 109.03116 * 198.34018 * 14 13 12 35 35 H 1.08994 * 109.03369 * 79.49345 * 14 13 12 36 36 H 1.09003 * 108.85446 * 198.11747 * 15 14 13 37 37 H 1.09003 * 108.77079 * 79.68040 * 15 14 13 38 38 H 1.07997 * 120.03392 * 359.97438 * 18 17 16 39 39 H 1.08008 * 119.96278 * 180.25102 * 19 18 17 40 40 H 1.08000 * 119.92993 * 179.76848 * 20 19 18 41 41 H 1.08003 * 119.96605 * 179.97438 * 21 20 19 42 42 H 1.08006 * 120.03882 * 179.97438 * 22 21 20 43 43 H 1.09000 * 108.94418 * 158.94187 * 23 16 15 44 44 H 1.09004 * 108.94295 * 40.32885 * 23 16 15 45 45 H 1.09002 * 108.94433 * 181.37370 * 24 23 16 46 46 H 1.08991 * 108.94923 * 299.99772 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0006 13 6 3.3360 -6.0137 -1.1226 14 6 3.6725 -7.3938 -1.7256 15 6 3.8988 -8.4561 -0.6295 16 7 4.6544 -7.9474 0.4881 17 6 5.5301 -8.9166 0.9829 18 6 6.8484 -8.9517 0.5462 19 6 7.7128 -9.9083 1.0411 20 6 7.2647 -10.8370 1.9625 21 6 5.9517 -10.8082 2.3954 22 6 5.0834 -9.8508 1.9088 23 6 3.7328 -7.4750 1.5464 24 6 3.2056 -6.1423 1.2634 25 1 -0.4849 0.8401 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8540 -5.0446 -0.8914 31 1 0.8534 -5.0451 0.8886 32 1 4.2602 -5.5377 -0.7949 33 1 2.8758 -5.3953 -1.8932 34 1 4.5763 -7.3073 -2.3288 35 1 2.8494 -7.7125 -2.3650 36 1 4.4356 -9.3003 -1.0626 37 1 2.9294 -8.8023 -0.2710 38 1 7.1977 -8.2296 -0.1769 39 1 8.7390 -9.9336 0.7051 40 1 7.9418 -11.5864 2.3451 41 1 5.6048 -11.5352 3.1148 42 1 4.0579 -9.8291 2.2469 43 1 4.2675 -7.4499 2.4959 44 1 2.9009 -8.1745 1.6292 45 1 2.5557 -5.8373 2.0836 46 1 4.0366 -5.4406 1.1928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263836861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:35 Heat of formation + Delta-G solvation = 34.745397 kcal Electronic energy + Delta-G solvation = -22799.746892 eV Core-core repulsion = 19688.960840 eV Total energy + Delta-G solvation = -3110.786052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.45657 -38.60069 -36.32498 -33.57559 -32.58940 -31.59726 -31.06139 -30.02174 -27.79588 -25.90385 -25.25374 -23.27483 -22.59941 -22.17399 -20.91901 -20.16482 -19.04599 -17.61595 -16.39328 -16.12396 -15.74617 -15.54226 -15.01949 -14.80394 -14.49047 -14.42038 -14.01241 -13.81704 -13.60819 -13.20687 -12.80233 -12.54498 -12.27119 -12.01131 -11.88412 -11.63800 -11.51819 -11.31973 -11.13502 -11.04629 -10.80794 -10.66472 -10.64088 -10.48235 -10.29320 -9.63898 -9.45616 -9.16166 -9.13921 -9.13451 -8.34452 -8.28270 -7.84120 -5.99073 -4.01425 1.12754 1.21233 3.30980 3.38449 3.42898 3.56110 3.68033 4.21571 4.46805 4.70280 4.76356 4.87903 4.93230 5.09668 5.21805 5.27932 5.33840 5.34166 5.36436 5.41352 5.50854 5.54216 5.65551 5.75263 5.81285 5.84001 5.92169 6.07304 6.09209 6.11883 6.19649 6.20034 6.27156 6.31327 6.32647 6.39820 6.63010 6.66738 6.82068 6.94357 7.08426 7.33410 7.44754 7.56504 7.68371 7.83050 8.00882 8.44513 9.05916 9.62731 11.12009 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.002854 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.546375 B = 9807.905140 C =10083.004035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.143 4.143 11 C 0.055 3.945 12 N -0.535 5.535 13 C 0.062 3.938 14 C -0.103 4.103 15 C 0.073 3.927 16 N -0.497 5.497 17 C 0.104 3.896 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.135 4.135 21 C -0.109 4.109 22 C -0.157 4.157 23 C 0.066 3.934 24 C 0.054 3.946 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.076 0.924 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.399 -22.899 2.004 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.182 4.182 11 C -0.072 4.072 12 N -0.258 5.258 13 C -0.067 4.067 14 C -0.142 4.142 15 C -0.053 4.053 16 N -0.216 5.216 17 C 0.009 3.991 18 C -0.126 4.126 19 C -0.130 4.130 20 C -0.153 4.153 21 C -0.127 4.127 22 C -0.177 4.177 23 C -0.061 4.061 24 C -0.074 4.074 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.220 -22.805 1.769 25.477 hybrid contribution 0.410 1.183 0.394 1.313 sum 11.630 -21.622 2.163 24.647 Atomic orbital electron populations 1.69979 1.06023 1.26428 1.51098 1.25030 0.94847 0.99236 0.95401 0.86563 0.80138 0.83894 0.77582 1.19782 1.21000 1.21017 1.21300 0.92980 0.91184 1.50229 0.92847 1.19031 0.93896 0.91344 0.97106 1.22253 0.99829 0.95777 1.00309 1.22425 0.94268 0.88315 1.02203 1.61766 1.17520 1.44559 1.01908 1.21721 0.95530 0.95783 0.93649 1.22026 1.00457 0.95242 0.96456 1.21786 0.96091 0.96200 0.91240 1.58974 1.19502 1.34711 1.08425 1.18962 0.93194 0.90910 0.96032 1.21021 0.91926 0.98900 1.00800 1.21088 0.99527 0.95109 0.97230 1.21122 0.96012 0.99596 0.98583 1.21023 0.93764 0.98316 0.99628 1.21688 1.00051 0.95583 1.00404 1.21254 0.94115 0.97466 0.93259 1.21070 0.97053 0.96076 0.93186 0.93091 0.96652 0.96695 0.93499 0.93303 0.91103 0.91295 0.93716 0.91818 0.92133 0.91804 0.92518 0.93097 0.85515 0.85955 0.86301 0.86289 0.86130 0.90900 0.93419 0.90570 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.14 -2.94 4.61 -26.73 -0.12 -3.06 16 11 C 0.06 0.95 5.07 -3.83 -0.02 0.93 16 12 N -0.53 -7.94 4.48 -239.08 -1.07 -9.01 16 13 C 0.06 0.90 4.08 -4.58 -0.02 0.88 16 14 C -0.10 -1.22 6.42 -25.35 -0.16 -1.38 16 15 C 0.07 0.84 5.23 -4.59 -0.02 0.82 16 16 N -0.50 -5.91 4.25 -175.33 -0.75 -6.65 16 17 C 0.10 1.15 4.35 -83.78 -0.36 0.79 16 18 C -0.11 -1.11 9.97 -39.38 -0.39 -1.50 16 19 C -0.11 -0.97 10.04 -39.62 -0.40 -1.37 16 20 C -0.13 -1.13 10.04 -39.55 -0.40 -1.52 16 21 C -0.11 -0.95 10.04 -39.61 -0.40 -1.35 16 22 C -0.16 -1.57 8.92 -39.38 -0.35 -1.92 16 23 C 0.07 0.78 4.06 -6.46 -0.03 0.75 16 24 C 0.05 0.75 4.29 -6.45 -0.03 0.72 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.97 7.11 -51.93 -0.37 0.60 16 29 H 0.05 1.01 6.73 -51.93 -0.35 0.67 16 30 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 31 H 0.07 1.18 7.91 -51.93 -0.41 0.77 16 32 H 0.04 0.70 7.17 -51.93 -0.37 0.32 16 33 H 0.06 0.97 6.91 -51.93 -0.36 0.61 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.61 7.58 -51.93 -0.39 0.22 16 37 H 0.05 0.61 7.16 -51.93 -0.37 0.24 16 38 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.12 1.13 6.88 -52.48 -0.36 0.77 16 43 H 0.07 0.82 7.55 -51.93 -0.39 0.43 16 44 H 0.05 0.55 6.82 -51.93 -0.35 0.20 16 45 H 0.08 1.04 7.71 -51.93 -0.40 0.64 16 46 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -30.41 354.92 -11.84 -42.25 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.84 Total: -1.94 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -3.25 Total: -20.46 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -1.08 Total: -42.13 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.41 -11.84 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263836861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.998 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds