Wall clock time and date at job start Fri Apr 10 2020 19:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99790 * 2 1 4 4 H 1.48505 * 109.47033 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47450 * 300.00055 * 3 2 1 6 6 H 1.48503 * 109.47216 * 60.00032 * 3 2 1 7 7 C 1.37873 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00200 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46802 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47256 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47499 * 180.02562 * 11 10 9 13 13 C 1.44187 * 111.00031 * 303.48300 * 12 11 10 14 14 C 1.54317 * 112.61931 * 217.52783 * 13 12 11 15 15 C 1.54318 * 111.72014 * 318.91301 * 14 13 12 16 16 N 1.44176 * 112.61572 * 318.92709 * 15 14 13 17 17 C 1.39678 * 110.99850 * 217.52585 * 16 15 14 18 18 C 1.38916 * 120.07348 * 94.62887 * 17 16 15 19 19 C 1.38098 * 119.92151 * 179.77012 * 18 17 16 20 20 C 1.38284 * 120.07899 * 0.49929 * 19 18 17 21 21 C 1.38286 * 120.14815 * 359.75497 * 20 19 18 22 22 C 1.38106 * 120.07312 * 359.97438 * 21 20 19 23 23 C 1.48073 * 109.89911 * 94.35124 * 16 15 14 24 24 C 1.46088 * 112.16006 * 279.63536 * 23 16 15 25 25 H 0.97001 * 119.99610 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47144 * 60.01220 * 9 7 2 27 27 H 1.08997 * 109.47843 * 300.00284 * 9 7 2 28 28 H 1.08997 * 109.47384 * 60.00044 * 10 9 7 29 29 H 1.09004 * 109.47253 * 299.99985 * 10 9 7 30 30 H 1.09007 * 109.47260 * 59.99746 * 11 10 9 31 31 H 1.09005 * 109.47201 * 300.00431 * 11 10 9 32 32 H 1.09000 * 108.85138 * 96.71424 * 13 12 11 33 33 H 1.09000 * 108.76568 * 338.27909 * 13 12 11 34 34 H 1.09005 * 109.03116 * 198.34018 * 14 13 12 35 35 H 1.08994 * 109.03369 * 79.49345 * 14 13 12 36 36 H 1.09003 * 108.85446 * 198.11747 * 15 14 13 37 37 H 1.09003 * 108.77079 * 79.68040 * 15 14 13 38 38 H 1.07997 * 120.03392 * 359.97438 * 18 17 16 39 39 H 1.08008 * 119.96278 * 180.25102 * 19 18 17 40 40 H 1.08000 * 119.92993 * 179.76848 * 20 19 18 41 41 H 1.08003 * 119.96605 * 179.97438 * 21 20 19 42 42 H 1.08006 * 120.03882 * 179.97438 * 22 21 20 43 43 H 1.09000 * 108.94418 * 158.94187 * 23 16 15 44 44 H 1.09004 * 108.94295 * 40.32885 * 23 16 15 45 45 H 1.09002 * 108.94433 * 181.37370 * 24 23 16 46 46 H 1.08991 * 108.94923 * 299.99772 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0006 13 6 3.3360 -6.0137 -1.1226 14 6 3.6725 -7.3938 -1.7256 15 6 3.8988 -8.4561 -0.6295 16 7 4.6544 -7.9474 0.4881 17 6 5.5301 -8.9166 0.9829 18 6 6.8484 -8.9517 0.5462 19 6 7.7128 -9.9083 1.0411 20 6 7.2647 -10.8370 1.9625 21 6 5.9517 -10.8082 2.3954 22 6 5.0834 -9.8508 1.9088 23 6 3.7328 -7.4750 1.5464 24 6 3.2056 -6.1423 1.2634 25 1 -0.4849 0.8401 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8540 -5.0446 -0.8914 31 1 0.8534 -5.0451 0.8886 32 1 4.2602 -5.5377 -0.7949 33 1 2.8758 -5.3953 -1.8932 34 1 4.5763 -7.3073 -2.3288 35 1 2.8494 -7.7125 -2.3650 36 1 4.4356 -9.3003 -1.0626 37 1 2.9294 -8.8023 -0.2710 38 1 7.1977 -8.2296 -0.1769 39 1 8.7390 -9.9336 0.7051 40 1 7.9418 -11.5864 2.3451 41 1 5.6048 -11.5352 3.1148 42 1 4.0579 -9.8291 2.2469 43 1 4.2675 -7.4499 2.4959 44 1 2.9009 -8.1745 1.6292 45 1 2.5557 -5.8373 2.0836 46 1 4.0366 -5.4406 1.1928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263836861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:34 Heat of formation + Delta-G solvation = 17.711437 kcal Electronic energy + Delta-G solvation = -22800.485540 eV Core-core repulsion = 19688.960840 eV Total energy + Delta-G solvation = -3111.524700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34401 -39.62043 -37.39736 -35.52621 -33.68868 -33.22655 -31.78640 -31.14880 -29.08985 -27.33208 -26.54926 -24.61033 -23.69344 -22.94345 -22.59158 -21.09881 -20.36362 -18.59047 -18.32490 -17.10179 -16.77487 -16.62619 -16.40961 -15.96196 -15.94656 -15.52336 -15.17998 -14.90882 -14.46073 -14.31322 -14.21028 -14.04929 -13.57167 -13.31132 -13.07555 -12.84577 -12.78758 -12.61036 -12.46664 -12.37771 -12.30564 -12.10267 -11.97752 -11.73712 -11.42262 -11.39567 -11.33639 -11.26064 -10.58009 -9.95585 -9.82702 -9.19629 -9.10001 -8.21893 -6.33760 0.42079 0.51735 1.37212 1.37266 1.50751 2.38446 2.78852 2.88307 2.99632 3.10132 3.88017 4.02306 4.07949 4.12755 4.21386 4.23200 4.27974 4.31497 4.36998 4.39451 4.48662 4.57825 4.62652 4.65604 4.73695 4.80167 4.83263 4.91536 4.98623 4.99417 5.05606 5.13765 5.14353 5.20642 5.20748 5.29232 5.48459 5.52500 5.59260 5.65590 5.69686 5.82767 5.97893 6.02373 6.15737 6.23226 6.28882 6.54339 6.82875 7.35531 8.89181 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.002854 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.546375 B = 9807.905140 C =10083.004035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.028 3.972 10 C -0.124 4.124 11 C 0.066 3.934 12 N -0.526 5.526 13 C 0.064 3.936 14 C -0.097 4.097 15 C 0.078 3.922 16 N -0.505 5.505 17 C 0.084 3.916 18 C -0.122 4.122 19 C -0.113 4.113 20 C -0.135 4.135 21 C -0.112 4.112 22 C -0.166 4.166 23 C 0.072 3.928 24 C 0.057 3.943 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.007 1.007 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.123 0.877 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.988 -24.116 2.397 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.163 4.163 11 C -0.061 4.061 12 N -0.248 5.248 13 C -0.066 4.066 14 C -0.136 4.136 15 C -0.048 4.048 16 N -0.225 5.225 17 C -0.010 4.010 18 C -0.141 4.141 19 C -0.132 4.132 20 C -0.153 4.153 21 C -0.131 4.131 22 C -0.186 4.186 23 C -0.055 4.055 24 C -0.071 4.071 25 H 0.073 0.927 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.141 0.859 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 12.824 -24.044 2.162 27.336 hybrid contribution -0.056 1.520 0.286 1.547 sum 12.768 -22.524 2.448 26.007 Atomic orbital electron populations 1.70098 1.07685 1.27727 1.51663 1.25967 0.95801 1.03284 0.94716 0.85425 0.78950 0.78882 0.77959 1.18904 1.20159 1.20165 1.21705 0.93255 0.92667 1.50536 0.92853 1.18926 0.94275 0.92876 0.94854 1.22027 0.98636 0.95707 0.99935 1.22239 0.94398 0.87216 1.02292 1.61860 1.17653 1.42609 1.02701 1.21739 0.94433 0.97311 0.93069 1.21986 1.01173 0.93712 0.96697 1.21731 0.95969 0.96074 0.91060 1.58926 1.19533 1.35542 1.08476 1.19059 0.93352 0.91480 0.97120 1.21132 0.92081 0.99615 1.01294 1.21366 1.00288 0.94535 0.96967 1.21471 0.96263 0.99684 0.97878 1.21326 0.93871 0.98212 0.99684 1.21780 1.00549 0.95862 1.00398 1.21132 0.94448 0.96233 0.93657 1.21108 0.96313 0.97072 0.92592 0.92702 0.98919 0.98863 0.93760 0.93634 0.91204 0.91042 0.95180 0.92956 0.91266 0.90936 0.91725 0.93577 0.85913 0.83939 0.83836 0.84255 0.85871 0.90212 0.92811 0.90430 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 9 C 0.03 1.53 4.97 29.85 0.15 1.68 16 10 C -0.12 -5.23 4.61 30.59 0.14 -5.09 16 11 C 0.07 2.30 5.07 86.30 0.44 2.74 16 12 N -0.53 -15.52 4.48 -910.30 -4.08 -19.60 16 13 C 0.06 1.82 4.08 87.26 0.36 2.18 16 14 C -0.10 -2.21 6.42 31.49 0.20 -2.00 16 15 C 0.08 1.71 5.23 87.26 0.46 2.17 16 16 N -0.51 -11.64 4.25 -708.61 -3.01 -14.65 16 17 C 0.08 1.78 4.35 38.21 0.17 1.95 16 18 C -0.12 -2.39 9.97 22.40 0.22 -2.17 16 19 C -0.11 -1.75 10.04 22.25 0.22 -1.53 16 20 C -0.13 -1.89 10.04 22.29 0.22 -1.66 16 21 C -0.11 -1.71 10.04 22.25 0.22 -1.49 16 22 C -0.17 -3.07 8.92 22.40 0.20 -2.87 16 23 C 0.07 1.66 4.06 83.95 0.34 2.00 16 24 C 0.06 1.57 4.29 83.95 0.36 1.93 16 25 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 28 H 0.04 1.87 7.11 -2.39 -0.02 1.85 16 29 H 0.04 1.93 6.73 -2.39 -0.02 1.92 16 30 H 0.07 2.45 8.12 -2.38 -0.02 2.43 16 31 H 0.07 2.45 7.91 -2.38 -0.02 2.43 16 32 H 0.03 0.95 7.17 -2.39 -0.02 0.93 16 33 H 0.05 1.61 6.91 -2.39 -0.02 1.59 16 34 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.31 7.58 -2.39 -0.02 1.29 16 37 H 0.05 1.05 7.16 -2.39 -0.02 1.03 16 38 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 42 H 0.12 2.13 6.88 -2.91 -0.02 2.11 16 43 H 0.08 1.73 7.55 -2.39 -0.02 1.71 16 44 H 0.05 1.18 6.82 -2.39 -0.02 1.17 16 45 H 0.08 2.10 7.71 -2.39 -0.02 2.08 16 46 H 0.03 0.95 6.91 -2.39 -0.02 0.94 16 Total: -1.00 -65.29 354.92 0.54 -64.75 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.93 Total: 12.75 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 4.40 Total: -33.27 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -6.81 Total: -91.36 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.29 0.54 -64.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263836861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.457 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds