Wall clock time and date at job start Fri Apr 10 2020 19:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46892 * 109.47175 * 2 1 4 4 C 1.46902 * 111.00028 * 196.39705 * 3 2 1 5 5 C 1.50702 * 109.46953 * 66.04793 * 4 3 2 6 6 H 1.07992 * 119.99869 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99269 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00597 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99425 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47453 * 119.99698 * 9 7 5 12 12 H 1.48501 * 109.47222 * 240.00045 * 9 7 5 13 13 C 1.46901 * 111.00043 * 72.44083 * 3 2 1 14 14 C 1.50700 * 109.47237 * 199.45256 * 13 3 2 15 15 C 1.38812 * 120.17598 * 263.93801 * 14 13 3 16 16 N 1.31510 * 121.58554 * 179.73171 * 15 14 13 17 17 C 1.32759 * 121.47192 * 0.57102 * 16 15 14 18 18 C 1.40918 * 119.85768 * 359.70224 * 17 16 15 19 19 C 1.37016 * 120.17644 * 84.21958 * 14 13 3 20 20 C 1.45850 * 106.45992 * 179.97438 * 18 17 16 21 21 C 1.50703 * 126.17096 * 179.97438 * 20 18 17 22 22 N 1.30238 * 107.65938 * 359.97438 * 20 18 17 23 23 N 1.36825 * 133.57609 * 179.67739 * 17 16 15 24 24 C 1.46501 * 125.39031 * 0.02607 * 23 17 16 25 25 H 1.08993 * 109.47447 * 61.23655 * 1 2 3 26 26 H 1.08998 * 109.47151 * 181.24084 * 1 2 3 27 27 H 1.09001 * 109.46750 * 301.23565 * 1 2 3 28 28 H 1.09002 * 109.46697 * 240.00058 * 2 1 3 29 29 H 1.09003 * 109.46998 * 120.00579 * 2 1 3 30 30 H 1.08994 * 109.46922 * 306.04614 * 4 3 2 31 31 H 1.09007 * 109.47089 * 186.04605 * 4 3 2 32 32 H 0.97006 * 120.00454 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47109 * 319.45583 * 13 3 2 34 34 H 1.09001 * 109.46745 * 79.45620 * 13 3 2 35 35 H 1.07996 * 119.20285 * 0.02782 * 15 14 13 36 36 H 1.07995 * 120.92155 * 359.95040 * 19 14 13 37 37 H 1.09001 * 109.46762 * 89.99921 * 21 20 18 38 38 H 1.09003 * 109.47117 * 209.99617 * 21 20 18 39 39 H 1.09000 * 109.46840 * 329.99538 * 21 20 18 40 40 H 1.08998 * 109.47257 * 89.99708 * 24 23 17 41 41 H 1.09004 * 109.47126 * 210.00090 * 24 23 17 42 42 H 1.09005 * 109.46509 * 329.99453 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4356 1.4427 -0.3871 5 6 3.5816 1.0108 -1.8236 6 1 2.7098 0.7227 -2.3920 7 6 4.8283 0.9836 -2.4118 8 7 5.8898 1.3349 -1.7196 9 14 5.0094 0.4476 -4.1920 10 1 3.6741 0.1050 -4.7442 11 1 5.6040 1.5541 -4.9842 12 1 5.8941 -0.7430 -4.2630 13 6 1.8051 2.0192 1.3075 14 6 1.8599 3.5174 1.1542 15 6 3.0395 4.2024 1.4111 16 7 3.1199 5.5086 1.2811 17 6 2.0721 6.2338 0.9086 18 6 0.8421 5.6018 0.6374 19 6 0.7439 4.2112 0.7660 20 6 -0.0908 6.6576 0.2605 21 6 -1.5369 6.4723 -0.1211 22 7 0.5513 7.7895 0.3133 23 7 1.8761 7.5725 0.7047 24 6 2.8930 8.6138 0.8710 25 1 -0.3634 0.4945 -0.9008 26 1 -0.3633 -1.0274 0.0223 27 1 -0.3633 0.5329 0.8787 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.0147 0.7773 0.2530 31 1 3.8014 2.4635 -0.2757 32 1 6.7670 1.3154 -2.1334 33 1 0.8289 1.7291 1.6962 34 1 2.5825 1.6962 1.9999 35 1 3.9136 3.6488 1.7205 36 1 -0.1855 3.6995 0.5645 37 1 -2.1593 6.5371 0.7714 38 1 -1.8295 7.2511 -0.8254 39 1 -1.6677 5.4948 -0.5852 40 1 3.4188 8.7622 -0.0722 41 1 2.4133 9.5458 1.1701 42 1 3.6037 8.3083 1.6390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267041341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:46 Heat of formation + Delta-G solvation = 100.726145 kcal Electronic energy + Delta-G solvation = -22793.760637 eV Core-core repulsion = 19582.295382 eV Total energy + Delta-G solvation = -3211.465256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34675 -38.40462 -36.62598 -34.23981 -32.71793 -32.01347 -30.58599 -29.62323 -29.41604 -27.29588 -25.60883 -24.17349 -23.68825 -22.35522 -21.57747 -19.80031 -19.58804 -17.22885 -16.85426 -16.25258 -15.81226 -15.73231 -14.87689 -14.44636 -14.25865 -13.90489 -13.59307 -13.48489 -13.33133 -13.02192 -12.82383 -12.75289 -12.48234 -12.28880 -12.09207 -11.79645 -11.62637 -11.59557 -11.19335 -11.01704 -10.71956 -10.68768 -10.51591 -10.21129 -10.03139 -9.78325 -9.16449 -9.12609 -8.68083 -8.42978 -7.87605 -7.26420 -6.02374 -4.02869 1.04426 1.60625 2.30440 2.55936 3.30940 3.38729 3.42988 4.02424 4.27308 4.43938 4.46620 4.66131 4.98380 5.09758 5.16892 5.27415 5.30765 5.34076 5.42869 5.47031 5.49301 5.52040 5.64316 5.71895 5.83571 5.88035 5.96753 5.99867 6.05467 6.09680 6.35616 6.46859 6.62637 6.70198 6.77641 6.80140 7.05931 7.29852 7.33241 7.63289 7.80712 8.09058 8.18174 8.22059 8.54118 9.04617 9.61140 11.08507 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.004853 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.095614 B = 5767.710033 C = 6594.535683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 N -0.533 5.533 4 C 0.191 3.809 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.099 3.901 14 C -0.150 4.150 15 C 0.189 3.811 16 N -0.506 5.506 17 C 0.309 3.691 18 C -0.226 4.226 19 C 0.022 3.978 20 C 0.107 3.893 21 C -0.073 4.073 22 N -0.252 5.252 23 N -0.401 5.401 24 C 0.117 3.883 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.018 0.982 30 H -0.009 1.009 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.163 0.837 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.896 7.596 7.588 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 N -0.257 5.257 4 C 0.066 3.934 5 C -0.544 4.544 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.030 4.030 14 C -0.154 4.154 15 C 0.021 3.979 16 N -0.220 5.220 17 C 0.071 3.929 18 C -0.235 4.235 19 C -0.007 4.007 20 C -0.072 4.072 21 C -0.131 4.131 22 N -0.066 5.066 23 N -0.193 5.193 24 C -0.025 4.025 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.037 0.963 30 H 0.009 0.991 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.181 0.819 36 H 0.154 0.846 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.135 9.789 7.229 16.495 hybrid contribution 0.389 -1.821 -0.548 1.942 sum -10.746 7.968 6.681 14.953 Atomic orbital electron populations 1.21820 0.96691 1.00177 1.01557 1.21969 0.94036 0.90139 1.01070 1.62160 1.23473 1.15951 1.24159 1.19786 0.80806 0.97011 0.95835 1.21180 0.92833 1.43924 0.96504 0.91862 1.24966 0.95890 0.95647 0.98032 1.69953 0.98568 1.48590 1.36546 0.86500 0.78108 0.78158 0.85013 1.19664 1.21100 1.21108 1.20866 1.00709 0.88992 0.92450 1.20299 0.94079 0.97261 1.03765 1.22716 0.96887 0.87561 0.90766 1.66783 1.28723 1.07770 1.18757 1.18984 0.91066 0.86074 0.96762 1.20336 0.94910 0.95117 1.13185 1.20495 0.98788 0.90160 0.91272 1.23412 0.96700 0.88829 0.98229 1.20242 0.87011 1.03689 1.02182 1.76552 0.89052 1.22897 1.18119 1.47859 1.07936 1.03112 1.60360 1.21711 0.88657 0.89310 1.02784 0.92293 0.93417 0.93640 0.89516 0.96332 0.99126 0.94872 0.93013 0.90874 0.94424 0.81948 0.84633 0.90045 0.90390 0.89749 0.91436 0.89920 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 10.00 37.16 0.37 -1.70 16 2 C 0.06 1.01 5.52 -3.83 -0.02 0.99 16 3 N -0.53 -10.76 4.37 -237.52 -1.04 -11.80 16 4 C 0.19 4.77 4.55 -4.97 -0.02 4.75 16 5 C -0.51 -13.98 8.28 -34.44 -0.29 -14.26 16 6 H 0.06 1.74 7.26 -52.49 -0.38 1.36 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.50 13.28 55.43 0.74 -25.76 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.10 1.64 4.97 -4.98 -0.02 1.61 16 14 C -0.15 -2.54 4.99 -104.85 -0.52 -3.06 16 15 C 0.19 3.40 9.55 -17.48 -0.17 3.24 16 16 N -0.51 -9.49 10.40 -12.34 -0.13 -9.61 16 17 C 0.31 5.57 7.97 -156.11 -1.24 4.33 16 18 C -0.23 -3.74 6.35 -105.18 -0.67 -4.41 16 19 C 0.02 0.34 9.86 -39.37 -0.39 -0.05 16 20 C 0.11 1.54 7.44 -80.22 -0.60 0.95 16 21 C -0.07 -0.70 10.48 36.01 0.38 -0.32 16 22 N -0.25 -3.95 12.40 34.82 0.43 -3.52 16 23 N -0.40 -6.50 4.04 -67.20 -0.27 -6.77 16 24 C 0.12 1.40 11.44 59.85 0.68 2.08 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.58 6.53 -51.93 -0.34 0.24 16 28 H 0.09 1.77 6.59 -51.93 -0.34 1.43 16 29 H 0.02 0.32 8.05 -51.93 -0.42 -0.10 16 30 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 31 H 0.03 0.89 6.36 -51.93 -0.33 0.56 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.03 6.24 -51.93 -0.32 0.71 16 34 H 0.04 0.62 7.91 -51.93 -0.41 0.21 16 35 H 0.16 2.78 8.00 -52.49 -0.42 2.36 16 36 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -32.86 348.75 -8.97 -41.83 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.33 Total: -1.93 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.60 Total: -4.37 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.27 Total: -57.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.86 -8.97 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267041341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.556 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds