Wall clock time and date at job start Fri Apr 10 2020 19:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46892 * 109.47175 * 2 1 4 4 C 1.46902 * 111.00028 * 196.39705 * 3 2 1 5 5 C 1.50702 * 109.46953 * 66.04793 * 4 3 2 6 6 H 1.07992 * 119.99869 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99269 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00597 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99425 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47453 * 119.99698 * 9 7 5 12 12 H 1.48501 * 109.47222 * 240.00045 * 9 7 5 13 13 C 1.46901 * 111.00043 * 72.44083 * 3 2 1 14 14 C 1.50700 * 109.47237 * 199.45256 * 13 3 2 15 15 C 1.38812 * 120.17598 * 263.93801 * 14 13 3 16 16 N 1.31510 * 121.58554 * 179.73171 * 15 14 13 17 17 C 1.32759 * 121.47192 * 0.57102 * 16 15 14 18 18 C 1.40918 * 119.85768 * 359.70224 * 17 16 15 19 19 C 1.37016 * 120.17644 * 84.21958 * 14 13 3 20 20 C 1.45850 * 106.45992 * 179.97438 * 18 17 16 21 21 C 1.50703 * 126.17096 * 179.97438 * 20 18 17 22 22 N 1.30238 * 107.65938 * 359.97438 * 20 18 17 23 23 N 1.36825 * 133.57609 * 179.67739 * 17 16 15 24 24 C 1.46501 * 125.39031 * 0.02607 * 23 17 16 25 25 H 1.08993 * 109.47447 * 61.23655 * 1 2 3 26 26 H 1.08998 * 109.47151 * 181.24084 * 1 2 3 27 27 H 1.09001 * 109.46750 * 301.23565 * 1 2 3 28 28 H 1.09002 * 109.46697 * 240.00058 * 2 1 3 29 29 H 1.09003 * 109.46998 * 120.00579 * 2 1 3 30 30 H 1.08994 * 109.46922 * 306.04614 * 4 3 2 31 31 H 1.09007 * 109.47089 * 186.04605 * 4 3 2 32 32 H 0.97006 * 120.00454 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47109 * 319.45583 * 13 3 2 34 34 H 1.09001 * 109.46745 * 79.45620 * 13 3 2 35 35 H 1.07996 * 119.20285 * 0.02782 * 15 14 13 36 36 H 1.07995 * 120.92155 * 359.95040 * 19 14 13 37 37 H 1.09001 * 109.46762 * 89.99921 * 21 20 18 38 38 H 1.09003 * 109.47117 * 209.99617 * 21 20 18 39 39 H 1.09000 * 109.46840 * 329.99538 * 21 20 18 40 40 H 1.08998 * 109.47257 * 89.99708 * 24 23 17 41 41 H 1.09004 * 109.47126 * 210.00090 * 24 23 17 42 42 H 1.09005 * 109.46509 * 329.99453 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4356 1.4427 -0.3871 5 6 3.5816 1.0108 -1.8236 6 1 2.7098 0.7227 -2.3920 7 6 4.8283 0.9836 -2.4118 8 7 5.8898 1.3349 -1.7196 9 14 5.0094 0.4476 -4.1920 10 1 3.6741 0.1050 -4.7442 11 1 5.6040 1.5541 -4.9842 12 1 5.8941 -0.7430 -4.2630 13 6 1.8051 2.0192 1.3075 14 6 1.8599 3.5174 1.1542 15 6 3.0395 4.2024 1.4111 16 7 3.1199 5.5086 1.2811 17 6 2.0721 6.2338 0.9086 18 6 0.8421 5.6018 0.6374 19 6 0.7439 4.2112 0.7660 20 6 -0.0908 6.6576 0.2605 21 6 -1.5369 6.4723 -0.1211 22 7 0.5513 7.7895 0.3133 23 7 1.8761 7.5725 0.7047 24 6 2.8930 8.6138 0.8710 25 1 -0.3634 0.4945 -0.9008 26 1 -0.3633 -1.0274 0.0223 27 1 -0.3633 0.5329 0.8787 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.0147 0.7773 0.2530 31 1 3.8014 2.4635 -0.2757 32 1 6.7670 1.3154 -2.1334 33 1 0.8289 1.7291 1.6962 34 1 2.5825 1.6962 1.9999 35 1 3.9136 3.6488 1.7205 36 1 -0.1855 3.6995 0.5645 37 1 -2.1593 6.5371 0.7714 38 1 -1.8295 7.2511 -0.8254 39 1 -1.6677 5.4948 -0.5852 40 1 3.4188 8.7622 -0.0722 41 1 2.4133 9.5458 1.1701 42 1 3.6037 8.3083 1.6390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267041341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:45 Heat of formation + Delta-G solvation = 79.868416 kcal Electronic energy + Delta-G solvation = -22794.665096 eV Core-core repulsion = 19582.295382 eV Total energy + Delta-G solvation = -3212.369715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.56542 -39.72856 -38.12682 -35.38155 -34.75530 -33.30978 -31.87221 -31.04628 -30.38547 -28.95414 -26.95467 -25.58377 -24.92448 -24.09933 -22.88737 -21.29925 -20.75236 -18.60275 -18.42622 -17.85580 -17.16255 -16.91496 -16.64691 -15.97499 -15.76595 -15.44155 -14.71029 -14.45294 -14.41324 -14.25463 -14.13757 -14.07142 -13.87559 -13.64661 -13.26770 -13.10845 -13.02548 -12.78842 -12.70158 -12.56154 -12.49598 -12.27890 -11.93336 -11.74481 -11.56593 -11.32650 -11.04979 -10.59508 -10.44620 -9.94266 -9.12397 -8.90570 -8.18195 -6.26210 -0.20740 0.30545 1.18565 1.38550 1.39985 1.40267 1.52471 2.40311 2.69972 3.15137 3.15563 3.29494 3.49800 3.56018 3.82057 4.05673 4.20911 4.25456 4.31648 4.34391 4.40237 4.56142 4.59277 4.67750 4.71478 4.74192 4.84566 4.85617 4.91867 5.03128 5.15393 5.19945 5.28149 5.35298 5.39545 5.45277 5.56681 5.65157 5.69700 5.83720 6.12161 6.43076 6.45578 6.71433 6.89856 6.91702 7.42835 8.92566 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.004853 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.095614 B = 5767.710033 C = 6594.535683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.053 3.947 3 N -0.537 5.537 4 C 0.207 3.793 5 C -0.517 4.517 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.960 3.040 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.278 1.278 13 C 0.103 3.897 14 C -0.163 4.163 15 C 0.172 3.828 16 N -0.530 5.530 17 C 0.283 3.717 18 C -0.240 4.240 19 C 0.033 3.967 20 C 0.114 3.886 21 C -0.072 4.072 22 N -0.268 5.268 23 N -0.411 5.411 24 C 0.110 3.890 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.023 0.977 30 H -0.038 1.038 31 H 0.008 0.992 32 H 0.262 0.738 33 H 0.110 0.890 34 H 0.034 0.966 35 H 0.156 0.844 36 H 0.170 0.830 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 7.413 7.080 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.075 4.075 3 N -0.261 5.261 4 C 0.081 3.919 5 C -0.555 4.555 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.211 1.211 12 H -0.203 1.203 13 C -0.025 4.025 14 C -0.167 4.167 15 C 0.004 3.996 16 N -0.245 5.245 17 C 0.044 3.956 18 C -0.250 4.250 19 C 0.005 3.995 20 C -0.065 4.065 21 C -0.130 4.130 22 N -0.082 5.082 23 N -0.203 5.203 24 C -0.030 4.030 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.042 0.958 30 H -0.020 1.020 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.052 0.948 35 H 0.173 0.827 36 H 0.187 0.813 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.114 9.611 6.731 18.354 hybrid contribution 1.278 -1.717 -0.342 2.167 sum -12.836 7.894 6.390 16.368 Atomic orbital electron populations 1.21721 0.92979 1.01977 1.02326 1.22030 0.96954 0.88634 0.99884 1.62082 1.19880 1.17532 1.26626 1.19386 0.83604 0.94538 0.94380 1.21522 0.92827 1.43425 0.97754 0.92017 1.25835 0.95654 0.95773 1.02376 1.70081 0.99052 1.49873 1.38433 0.85464 0.78463 0.77758 0.79745 1.18565 1.21098 1.20318 1.20929 1.02462 0.88494 0.90591 1.20334 0.94226 0.97396 1.04756 1.22762 0.97496 0.87737 0.91583 1.66709 1.29750 1.08180 1.19862 1.19364 0.91670 0.87213 0.97312 1.20711 0.95069 0.95954 1.13264 1.20824 0.99428 0.89893 0.89371 1.24172 0.98302 0.87477 0.96500 1.20484 0.83968 1.04923 1.03624 1.76548 0.88979 1.23638 1.19042 1.48238 1.08712 1.03062 1.60242 1.21938 0.88445 0.89523 1.03106 0.92792 0.91253 0.91411 0.92488 0.95846 1.02019 0.97354 0.92958 0.87245 0.94777 0.82702 0.81282 0.87610 0.89236 0.88288 0.91132 0.87460 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 10.00 71.98 0.72 -2.62 16 2 C 0.05 1.85 5.52 86.31 0.48 2.33 16 3 N -0.54 -21.44 4.37 -905.37 -3.96 -25.40 16 4 C 0.21 10.72 4.55 85.56 0.39 11.11 16 5 C -0.52 -29.08 8.28 25.60 0.21 -28.87 16 6 H 0.06 3.42 7.26 -2.91 -0.02 3.40 16 7 C 0.00 0.08 5.46 84.66 0.46 0.54 16 8 N -0.93 -56.71 13.28 21.45 0.28 -56.42 16 9 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 C 0.10 3.32 4.97 85.56 0.43 3.74 16 14 C -0.16 -5.45 4.99 -20.01 -0.10 -5.55 16 15 C 0.17 6.45 9.55 84.88 0.81 7.26 16 16 N -0.53 -20.64 10.40 -192.95 -2.01 -22.64 16 17 C 0.28 10.29 7.97 134.12 1.07 11.36 16 18 C -0.24 -7.67 6.35 -20.23 -0.13 -7.80 16 19 C 0.03 0.98 9.86 22.41 0.22 1.20 16 20 C 0.11 3.05 7.44 44.77 0.33 3.39 16 21 C -0.07 -1.12 10.48 71.24 0.75 -0.37 16 22 N -0.27 -8.06 12.40 -43.75 -0.54 -8.60 16 23 N -0.41 -13.22 4.04 -366.53 -1.48 -14.71 16 24 C 0.11 2.63 11.44 127.77 1.46 4.09 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.41 6.53 -2.39 -0.02 1.40 16 28 H 0.06 2.32 6.59 -2.39 -0.02 2.31 16 29 H 0.02 0.79 8.05 -2.39 -0.02 0.77 16 30 H -0.04 -2.13 8.12 -2.39 -0.02 -2.15 16 31 H 0.01 0.47 6.36 -2.38 -0.02 0.46 16 32 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 33 H 0.11 2.71 6.24 -2.39 -0.01 2.69 16 34 H 0.03 1.12 7.91 -2.39 -0.02 1.11 16 35 H 0.16 5.78 8.00 -2.91 -0.02 5.75 16 36 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.09 2.05 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -73.09 348.75 2.43 -70.66 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.01 Total: 10.41 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 7.10 Total: -0.18 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -7.70 Total: -127.77 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -73.09 2.43 -70.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267041341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.529 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds