Wall clock time and date at job start Fri Apr 10 2020 19:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47284 * 2 1 4 4 N 1.31895 * 119.90936 * 271.48112 * 3 2 1 5 5 N 1.28277 * 122.67452 * 180.02562 * 4 3 2 6 6 C 1.32585 * 122.19830 * 0.02562 * 5 4 3 7 7 N 1.38454 * 120.27736 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00429 * 0.27881 * 7 6 5 9 9 C 1.53000 * 109.47326 * 179.71973 * 8 7 6 10 10 C 1.52997 * 109.46810 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47141 * 180.02562 * 10 9 8 12 12 H 1.08008 * 119.99429 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00380 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00026 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00186 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47163 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47596 * 119.99465 * 15 13 11 18 18 H 1.48506 * 109.46959 * 239.99384 * 15 13 11 19 19 C 1.40768 * 119.44025 * 0.27354 * 6 5 4 20 20 C 1.43200 * 121.19586 * 179.72381 * 19 6 5 21 21 N 5.99392 * 107.13648 * 35.15291 * 2 1 3 22 22 C 1.38461 * 119.90523 * 91.50452 * 3 2 1 23 23 C 1.50694 * 121.05384 * 359.97438 * 22 3 2 24 24 C 1.53003 * 109.47272 * 90.67257 * 23 22 3 25 25 H 1.09002 * 109.46712 * 64.88726 * 1 2 3 26 26 H 1.08995 * 109.47343 * 184.88440 * 1 2 3 27 27 H 1.08994 * 109.46886 * 304.88825 * 1 2 3 28 28 H 1.09004 * 109.47121 * 239.99746 * 2 1 3 29 29 H 1.08998 * 109.47240 * 120.00232 * 2 1 3 30 30 H 0.97000 * 119.99888 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47003 * 299.72499 * 8 7 6 32 32 H 1.09004 * 109.46774 * 59.72007 * 8 7 6 33 33 H 1.08994 * 109.47239 * 299.99869 * 9 8 7 34 34 H 1.09004 * 109.46759 * 59.99922 * 9 8 7 35 35 H 1.09001 * 109.47109 * 299.99800 * 10 9 8 36 36 H 1.08996 * 109.47431 * 60.00221 * 10 9 8 37 37 H 0.96993 * 120.00238 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.46958 * 210.67014 * 23 22 3 39 39 H 1.08996 * 109.47212 * 330.66909 * 23 22 3 40 40 H 1.08998 * 109.46976 * 55.72838 * 24 23 22 41 41 H 1.08999 * 109.46929 * 175.73256 * 24 23 22 42 42 H 1.08997 * 109.47168 * 295.72928 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2237 2.0506 -1.1429 5 7 2.6498 3.2590 -1.2048 6 6 2.9305 3.9656 -0.1186 7 7 3.3887 5.2672 -0.2317 8 6 3.5595 5.8714 -1.5554 9 6 4.0664 7.3065 -1.3995 10 6 4.2453 7.9371 -2.7819 11 6 4.7453 9.3505 -2.6285 12 1 4.9177 9.7583 -1.6433 13 6 4.9815 10.1234 -3.7455 14 7 4.7709 9.6270 -4.9451 15 14 5.6005 11.8754 -3.5552 16 1 5.7549 12.1920 -2.1126 17 1 6.9130 12.0135 -4.2358 18 1 4.6251 12.8141 -4.1660 19 6 2.7648 3.3792 1.1503 20 6 3.0623 4.1059 2.3478 21 7 3.2961 4.6832 3.2979 22 6 2.2922 2.0611 1.1998 23 6 2.0804 1.3601 2.5169 24 6 3.3731 0.6555 2.9333 25 1 -0.3633 0.4362 -0.9306 26 1 -0.3634 -1.0239 0.0875 27 1 -0.3633 0.5878 0.8429 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.5926 5.7806 0.5656 31 1 4.2820 5.2911 -2.1292 32 1 2.6026 5.8788 -2.0775 33 1 3.3439 7.8868 -0.8258 34 1 5.0232 7.2991 -0.8773 35 1 4.9681 7.3567 -3.3553 36 1 3.2888 7.9445 -3.3045 37 1 4.9368 10.1708 -5.7310 38 1 1.8038 2.0907 3.2770 39 1 1.2829 0.6244 2.4128 40 1 4.1877 1.3791 2.9638 41 1 3.2435 0.2124 3.9207 42 1 3.6090 -0.1270 2.2121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268208815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:48 Heat of formation + Delta-G solvation = 38.198545 kcal Electronic energy + Delta-G solvation = -21762.244623 eV Core-core repulsion = 18548.067967 eV Total energy + Delta-G solvation = -3214.176656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.42091 -38.57217 -38.11698 -36.66956 -35.71266 -34.57870 -33.33607 -31.96022 -30.61930 -28.38056 -26.98676 -25.83809 -24.62094 -23.59013 -22.38559 -22.21296 -19.87717 -19.11050 -18.44099 -18.39646 -16.91026 -16.54226 -16.14571 -16.11944 -15.62486 -15.39098 -15.02428 -14.78663 -14.52853 -14.34120 -14.30695 -14.17582 -13.99341 -13.77834 -13.53099 -13.36485 -12.89621 -12.80246 -12.62463 -12.51889 -12.36380 -12.16379 -12.01719 -11.85877 -11.70831 -11.48465 -11.47068 -11.20619 -10.79966 -10.68669 -10.57630 -9.19045 -8.21757 -6.32880 -0.78764 0.03421 1.27255 1.39150 1.39456 1.52349 1.70829 1.82020 2.39779 2.44315 2.55139 2.96435 3.11905 3.36188 3.49931 3.63392 4.02229 4.05317 4.17039 4.18032 4.28428 4.40332 4.47082 4.52212 4.54370 4.64733 4.78502 4.91331 4.96621 4.99448 5.08148 5.10904 5.13098 5.17984 5.32274 5.34247 5.47437 5.53565 5.68190 5.72981 5.82034 6.11751 6.21049 6.22250 6.83864 7.36460 7.75024 8.90355 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.002876 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.340349 B = 9731.958399 C =10586.292839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C 0.016 3.984 4 N -0.198 5.198 5 N -0.328 5.328 6 C 0.374 3.626 7 N -0.697 5.697 8 C 0.140 3.860 9 C -0.107 4.107 10 C 0.028 3.972 11 C -0.543 4.543 12 H 0.060 0.940 13 C 0.000 4.000 14 N -0.931 5.931 15 Si 0.964 3.036 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.109 4.109 20 C 0.276 3.724 21 N -0.421 5.421 22 C 0.035 3.965 23 C -0.094 4.094 24 C -0.147 4.147 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.413 0.587 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H -0.003 1.003 36 H -0.003 1.003 37 H 0.264 0.736 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.038 0.962 41 H 0.087 0.913 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 -23.553 16.334 29.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 C -0.134 4.134 4 N -0.039 5.039 5 N -0.180 5.180 6 C 0.128 3.872 7 N -0.328 5.328 8 C 0.017 3.983 9 C -0.145 4.145 10 C -0.010 4.010 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.198 4.198 14 N -0.571 5.571 15 Si 0.789 3.211 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.128 4.128 20 C -0.040 4.040 21 N -0.098 5.098 22 C 0.021 3.979 23 C -0.132 4.132 24 C -0.205 4.205 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.132 0.868 30 H 0.250 0.750 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.144 0.856 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.337 -22.500 15.743 28.424 hybrid contribution 0.520 1.539 0.781 1.803 sum -6.817 -20.961 16.524 27.548 Atomic orbital electron populations 1.21772 0.93416 1.03505 1.01868 1.20556 0.96953 0.87034 1.05582 1.22940 1.01825 1.00634 0.88020 1.72551 1.04383 1.00531 1.26436 1.73245 1.18621 1.02277 1.23907 1.20131 0.89559 0.87622 0.89895 1.44636 1.68431 1.09616 1.10119 1.21363 1.01034 0.93361 0.82545 1.21634 1.00534 0.93109 0.99214 1.18898 0.95422 0.94573 0.92103 1.21684 1.44311 0.99194 0.92936 0.92129 1.25964 0.95758 1.03126 0.94965 1.70099 1.49996 1.38628 0.98417 0.85408 0.77970 0.79111 0.78606 1.18691 1.20365 1.20374 1.16400 1.14116 0.95756 0.86547 1.24960 0.93367 0.93222 0.92406 1.81325 1.09438 1.08364 1.10644 1.21310 0.87948 0.89743 0.98920 1.20929 1.01587 1.00676 0.89958 1.21781 0.94782 1.00484 1.03440 0.93863 0.89497 0.92168 0.89380 0.86795 0.74985 0.91889 0.91914 0.92060 0.92056 0.98435 0.98440 0.92705 0.90332 0.85617 0.94301 0.89434 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.77 71.98 0.70 -0.62 16 2 C -0.06 -0.63 5.58 29.85 0.17 -0.47 16 3 C 0.02 0.30 6.11 42.60 0.26 0.56 16 4 N -0.20 -5.30 11.39 -47.74 -0.54 -5.84 16 5 N -0.33 -10.23 10.74 -54.58 -0.59 -10.81 16 6 C 0.37 10.51 7.58 133.60 1.01 11.52 16 7 N -0.70 -20.48 5.63 -343.95 -1.94 -22.42 16 8 C 0.14 4.87 5.71 86.38 0.49 5.37 16 9 C -0.11 -4.25 5.27 30.59 0.16 -4.09 16 10 C 0.03 1.45 4.97 29.85 0.15 1.59 16 11 C -0.54 -30.80 9.11 25.60 0.23 -30.56 16 12 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 13 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 14 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 15 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 16 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 C -0.11 -2.46 5.79 -20.96 -0.12 -2.58 16 20 C 0.28 6.37 12.96 88.33 1.15 7.52 16 21 N -0.42 -10.90 18.54 19.00 0.35 -10.55 16 22 C 0.04 0.59 5.21 -19.36 -0.10 0.49 16 23 C -0.09 -0.89 5.04 29.85 0.15 -0.74 16 24 C -0.15 -1.21 9.81 71.98 0.71 -0.51 16 25 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 0.48 7.73 -2.39 -0.02 0.46 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.11 0.46 5.96 -2.39 -0.01 0.45 16 30 H 0.41 11.12 7.40 -92.71 -0.69 10.43 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 2.34 8.14 -2.38 -0.02 2.33 16 35 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 38 H 0.08 0.84 7.28 -2.39 -0.02 0.82 16 39 H 0.13 0.49 6.22 -2.39 -0.01 0.47 16 40 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 0.47 7.48 -2.39 -0.02 0.45 16 Total: -1.00 -69.28 356.51 5.36 -63.92 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.34 Total: 7.85 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 5.42 Total: -12.05 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -2.43 Total: -106.17 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -69.28 5.36 -63.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268208815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.120 kcal (2) G-P(sol) polarization free energy of solvation -69.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds