Wall clock time and date at job start Fri Apr 10 2020 19:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38282 * 119.92759 * 2 1 4 4 C 1.38108 * 120.07359 * 179.97438 * 3 2 1 5 5 C 1.38905 * 119.92760 * 0.02562 * 4 3 2 6 6 N 1.39675 * 120.07643 * 179.97438 * 5 4 3 7 7 C 1.46963 * 110.99619 * 56.17754 * 6 5 4 8 8 C 1.53056 * 109.35944 * 183.16858 * 7 6 5 9 9 N 1.46956 * 109.38342 * 301.62902 * 8 7 6 10 10 C 1.46899 * 111.00293 * 183.17592 * 9 8 7 11 11 C 1.53001 * 109.47163 * 169.99976 * 10 9 8 12 12 C 1.53001 * 109.46714 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.46800 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99790 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00026 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99898 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00173 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46936 * 60.00318 * 17 15 13 19 19 H 1.48502 * 109.47321 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47426 * 300.00297 * 17 15 13 21 21 C 1.46962 * 110.87987 * 59.31148 * 9 8 7 22 22 C 1.46956 * 111.00137 * 179.97438 * 6 5 4 23 23 C 1.38910 * 119.84869 * 0.25072 * 5 4 3 24 24 C 1.38102 * 119.92691 * 359.49867 * 23 5 4 25 25 H 1.08995 * 109.47684 * 89.99703 * 1 2 3 26 26 H 1.09002 * 109.47342 * 209.99981 * 1 2 3 27 27 H 1.09004 * 109.47003 * 329.99564 * 1 2 3 28 28 H 1.07997 * 119.96529 * 0.02562 * 3 2 1 29 29 H 1.08005 * 120.03626 * 180.02562 * 4 3 2 30 30 H 1.08992 * 109.47287 * 63.21248 * 7 6 5 31 31 H 1.08994 * 109.50466 * 303.13920 * 7 6 5 32 32 H 1.09002 * 109.48813 * 181.65179 * 8 7 6 33 33 H 1.09002 * 109.48870 * 61.61068 * 8 7 6 34 34 H 1.08997 * 109.47217 * 290.00426 * 10 9 8 35 35 H 1.09001 * 109.46537 * 50.00019 * 10 9 8 36 36 H 1.08999 * 109.46961 * 300.00585 * 11 10 9 37 37 H 1.09000 * 109.46631 * 60.00663 * 11 10 9 38 38 H 1.08997 * 109.47018 * 300.00053 * 12 11 10 39 39 H 1.09001 * 109.47667 * 60.00141 * 12 11 10 40 40 H 0.96996 * 119.99961 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.48625 * 60.64585 * 21 9 8 42 42 H 1.09003 * 109.48941 * 180.69193 * 21 9 8 43 43 H 1.09002 * 109.48806 * 56.84292 * 22 6 5 44 44 H 1.09003 * 109.49203 * 296.77934 * 22 6 5 45 45 H 1.08004 * 120.03865 * 179.72760 * 23 5 4 46 46 H 1.08000 * 119.96861 * 180.25222 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5779 1.2019 0.0005 5 6 4.2740 -0.0001 0.0005 6 7 5.6707 -0.0002 0.0005 7 6 6.1973 0.7635 1.1404 8 6 7.7252 0.8058 1.0603 9 7 8.2518 -0.5661 1.0604 10 6 9.7208 -0.5662 1.0603 11 6 10.2307 -1.9868 1.3108 12 6 11.7608 -1.9867 1.3113 13 6 12.2630 -3.3861 1.5575 14 1 11.5611 -4.1945 1.6998 15 6 13.6186 -3.6343 1.6011 16 7 14.4733 -2.6498 1.4283 17 14 14.2412 -5.3687 1.9069 18 1 13.7460 -6.2687 0.8344 19 1 15.7262 -5.3687 1.9073 20 1 13.7464 -5.8476 3.2226 21 6 7.7251 -1.3294 -0.0797 22 6 6.1973 -1.3721 0.0011 23 6 3.5778 -1.2022 -0.0053 24 6 2.1968 -1.1986 -0.0006 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6551 2.1327 0.0004 29 1 4.1161 2.1383 0.0010 30 1 5.8951 0.2826 2.0706 31 1 5.8034 1.7793 1.1110 32 1 8.1196 1.3468 1.9205 33 1 8.0274 1.3114 0.1431 34 1 10.0841 -0.2148 0.0946 35 1 10.0842 0.0944 1.8475 36 1 9.8674 -2.3382 2.2765 37 1 9.8674 -2.6473 0.5235 38 1 12.1244 -1.6351 0.3458 39 1 12.1239 -1.3262 2.0987 40 1 15.4269 -2.8244 1.4586 41 1 8.0270 -0.8482 -1.0100 42 1 8.1197 -2.3451 -0.0508 43 1 5.8030 -1.9134 -0.8589 44 1 5.8954 -1.8772 0.9187 45 1 4.1159 -2.1386 -0.0097 46 1 1.6549 -2.1328 -0.0010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273593796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:03 Heat of formation + Delta-G solvation = 7.312833 kcal Electronic energy + Delta-G solvation = -22212.647144 eV Core-core repulsion = 19100.671527 eV Total energy + Delta-G solvation = -3111.975617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.39170 -39.51886 -37.24045 -35.54663 -33.60121 -32.63920 -32.17443 -31.39528 -29.34643 -27.42292 -25.82687 -25.34668 -24.05324 -22.89737 -22.07659 -21.55387 -20.68196 -18.64531 -18.33690 -16.75603 -16.62918 -16.51440 -16.19318 -16.02314 -15.65256 -15.59134 -15.16857 -14.78556 -14.64851 -14.45401 -14.39395 -14.22480 -13.68653 -13.35886 -13.05985 -12.92785 -12.84777 -12.62324 -12.57028 -12.48044 -12.41417 -12.21250 -12.10451 -11.96301 -11.65926 -11.39834 -11.34257 -11.06474 -10.54454 -10.51340 -9.84413 -9.34835 -8.67767 -8.19936 -6.30918 0.44099 0.50356 1.39767 1.43032 1.50923 2.40777 2.60649 2.87624 2.95114 3.12935 3.75151 3.86143 3.96367 4.07638 4.08271 4.13625 4.20713 4.24663 4.35809 4.42955 4.48918 4.53800 4.55769 4.67876 4.72022 4.72789 4.80970 4.84697 4.89218 4.89990 4.94380 5.01979 5.08237 5.15126 5.21193 5.25744 5.34378 5.46346 5.51498 5.73655 5.75860 5.85496 5.86740 5.97787 6.03092 6.12611 6.26816 6.36870 6.85560 7.38025 8.91696 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.038223 B = 0.002453 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.359912 B =11410.784625 C =11984.452429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 C -0.101 4.101 4 C -0.147 4.147 5 C 0.092 3.908 6 N -0.499 5.499 7 C 0.069 3.931 8 C 0.054 3.946 9 N -0.546 5.546 10 C 0.069 3.931 11 C -0.088 4.088 12 C 0.026 3.974 13 C -0.542 4.542 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.054 3.946 22 C 0.063 3.937 23 C -0.180 4.180 24 C -0.102 4.102 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.050 0.950 38 H -0.010 1.010 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.034 0.966 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.129 0.871 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.047 7.688 -2.928 29.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.167 4.167 5 C -0.006 4.006 6 N -0.214 5.214 7 C -0.056 4.056 8 C -0.074 4.074 9 N -0.270 5.270 10 C -0.058 4.058 11 C -0.126 4.126 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.075 4.075 22 C -0.064 4.064 23 C -0.201 4.201 24 C -0.121 4.121 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.008 0.992 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.147 0.853 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -27.778 7.745 -2.918 28.984 hybrid contribution 1.155 -0.710 -0.100 1.360 sum -26.623 7.034 -3.018 27.701 Atomic orbital electron populations 1.20768 0.89548 1.03405 1.02773 1.20197 0.97436 0.92943 1.01902 1.21168 0.93353 0.98549 0.98882 1.20954 0.94642 0.96719 1.04389 1.19140 0.87891 0.94505 0.99021 1.59296 1.05190 1.15259 1.41692 1.22270 0.93905 0.99020 0.90401 1.22249 0.94283 0.89269 1.01620 1.62207 1.07654 1.14277 1.42903 1.22003 0.86207 0.97971 0.99638 1.21386 0.95511 0.95159 1.00561 1.18968 0.91910 0.95575 0.94728 1.21653 0.92174 0.95401 1.48819 0.92283 1.26004 0.97368 1.01653 0.94984 1.70091 1.02412 1.33718 1.51115 0.85494 0.76981 0.79332 0.79204 1.19154 1.20802 1.19180 1.22227 0.94280 0.99357 0.91594 1.22275 0.93735 0.88381 1.01988 1.21486 0.95408 0.97446 1.05739 1.21148 0.93412 0.98591 0.98948 0.90751 0.91087 0.90773 0.84003 0.85119 0.93684 0.88036 0.88937 0.94365 0.95757 0.91027 0.92964 0.93137 0.99211 0.98924 0.92781 0.94769 0.89876 0.88761 0.93017 0.85282 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 71.23 0.71 -0.39 16 2 C -0.12 -1.96 5.88 -19.84 -0.12 -2.08 16 3 C -0.10 -1.63 9.69 22.25 0.22 -1.41 16 4 C -0.15 -2.78 9.19 22.40 0.21 -2.57 16 5 C 0.09 1.99 5.64 38.21 0.22 2.21 16 6 N -0.50 -11.52 4.76 -694.77 -3.30 -14.83 16 7 C 0.07 1.50 5.38 86.31 0.46 1.96 16 8 C 0.05 1.32 5.61 86.31 0.48 1.80 16 9 N -0.55 -16.26 4.71 -895.68 -4.22 -20.48 16 10 C 0.07 2.44 4.96 86.30 0.43 2.87 16 11 C -0.09 -3.73 5.09 30.59 0.16 -3.57 16 12 C 0.03 1.39 4.97 29.85 0.15 1.54 16 13 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 16 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 17 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C 0.05 1.49 5.41 86.31 0.47 1.96 16 22 C 0.06 1.49 4.29 86.31 0.37 1.86 16 23 C -0.18 -3.66 8.82 22.40 0.20 -3.46 16 24 C -0.10 -1.78 9.69 22.25 0.22 -1.56 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16 27 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 28 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.13 2.17 7.18 -2.91 -0.02 2.15 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.79 6.82 -2.39 -0.02 1.77 16 32 H 0.09 2.07 8.07 -2.39 -0.02 2.05 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 35 H 0.07 2.49 8.03 -2.39 -0.02 2.47 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 2.08 6.49 -2.39 -0.02 2.06 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 2.42 6.34 -2.39 -0.02 2.41 16 43 H 0.09 1.99 7.15 -2.39 -0.02 1.97 16 44 H 0.05 1.25 7.60 -2.39 -0.02 1.23 16 45 H 0.13 2.46 5.81 -2.91 -0.02 2.44 16 46 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -66.04 359.75 0.58 -65.46 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.93 Total: 11.99 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 4.86 Total: -31.74 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -7.24 Total: -92.53 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -66.04 0.58 -65.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273593796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.772 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds