Wall clock time and date at job start Fri Apr 10 2020 19:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47077 * 2 1 4 4 N 1.31895 * 119.90321 * 271.45635 * 3 2 1 5 5 N 1.28268 * 122.66752 * 180.02562 * 4 3 2 6 6 C 1.32588 * 122.20645 * 0.02562 * 5 4 3 7 7 N 1.38461 * 120.28353 * 180.02562 * 6 5 4 8 8 C 1.46499 * 120.00092 * 359.97100 * 7 6 5 9 9 H 1.08996 * 109.47220 * 325.00583 * 8 7 6 10 10 C 1.50694 * 109.47074 * 205.00479 * 8 7 6 11 11 H 1.07999 * 119.99893 * 359.97438 * 10 8 7 12 12 C 1.37875 * 119.99732 * 180.02562 * 10 8 7 13 13 N 1.31515 * 120.00265 * 359.97438 * 12 10 8 14 14 Si 1.86810 * 119.99826 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46820 * 89.99765 * 14 12 10 16 16 H 1.48500 * 109.46828 * 209.99730 * 14 12 10 17 17 H 1.48500 * 109.46935 * 329.99969 * 14 12 10 18 18 C 1.53001 * 109.46766 * 84.99943 * 8 7 6 19 19 C 1.52997 * 109.47383 * 295.00173 * 18 8 7 20 20 C 1.40770 * 119.43374 * 359.97438 * 6 5 4 21 21 C 1.43203 * 121.19241 * 180.02562 * 20 6 5 22 22 N 5.99394 * 106.95539 * 35.11943 * 2 1 3 23 23 C 1.38454 * 119.90583 * 91.47974 * 3 2 1 24 24 C 1.50704 * 121.05715 * 359.95624 * 23 3 2 25 25 C 1.53001 * 109.46731 * 90.78892 * 24 23 3 26 26 H 1.09003 * 109.47055 * 184.88400 * 1 2 3 27 27 H 1.08998 * 109.47544 * 304.88490 * 1 2 3 28 28 H 1.09004 * 109.46509 * 64.88914 * 1 2 3 29 29 H 1.08997 * 109.47465 * 239.99538 * 2 1 3 30 30 H 1.09005 * 109.46596 * 119.99698 * 2 1 3 31 31 H 0.97000 * 119.99322 * 179.97438 * 7 6 5 32 32 H 0.97000 * 119.99929 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.46730 * 55.00547 * 18 8 7 34 34 H 1.08999 * 109.46628 * 175.00034 * 18 8 7 35 35 H 1.09006 * 109.46859 * 180.02562 * 19 18 8 36 36 H 1.09000 * 109.46870 * 299.99522 * 19 18 8 37 37 H 1.08999 * 109.47352 * 60.00305 * 19 18 8 38 38 H 1.08997 * 109.47060 * 210.79048 * 24 23 3 39 39 H 1.08998 * 109.46737 * 330.78851 * 24 23 3 40 40 H 1.09000 * 109.47430 * 295.72632 * 25 24 23 41 41 H 1.08997 * 109.47117 * 55.72944 * 25 24 23 42 42 H 1.09004 * 109.46659 * 175.72846 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2241 2.0505 -1.1430 5 7 2.6501 3.2587 -1.2048 6 6 2.9305 3.9657 -0.1187 7 7 3.3877 5.2677 -0.2318 8 6 3.5642 5.8697 -1.5557 9 1 3.9010 5.1082 -2.2591 10 6 4.5921 6.9686 -1.4748 11 1 5.0662 7.1962 -0.5315 12 6 4.9266 7.6842 -2.6048 13 7 4.3490 7.4074 -3.7535 14 14 6.2004 9.0470 -2.5044 15 1 7.5496 8.4835 -2.7638 16 1 5.8944 10.0863 -3.5200 17 1 6.1696 9.6544 -1.1496 18 6 2.2320 6.4514 -2.0331 19 6 1.2238 5.3184 -2.2348 20 6 2.7582 3.3815 1.1504 21 6 3.0489 4.1107 2.3481 22 7 3.2780 4.6897 3.2983 23 6 2.2916 2.0613 1.1998 24 6 2.0790 1.3607 2.5170 25 6 3.3722 0.6584 2.9356 26 1 -0.3633 -1.0240 0.0875 27 1 -0.3634 0.5877 0.8430 28 1 -0.3632 0.4361 -0.9306 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.5911 5.7812 0.5656 32 1 4.5846 7.9106 -4.5485 33 1 1.8513 7.1480 -1.2862 34 1 2.3822 6.9764 -2.9765 35 1 0.2749 5.7328 -2.5754 36 1 1.6046 4.6219 -2.9818 37 1 1.0737 4.7934 -1.2914 38 1 1.8000 2.0913 3.2762 39 1 1.2828 0.6237 2.4120 40 1 3.6103 -0.1242 2.2152 41 1 4.1856 1.3832 2.9668 42 1 3.2419 0.2156 3.9231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273900891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:07 Heat of formation + Delta-G solvation = 69.477226 kcal Electronic energy + Delta-G solvation = -23139.375381 eV Core-core repulsion = 19926.555071 eV Total energy + Delta-G solvation = -3212.820310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.03097 -37.18603 -36.79396 -35.32120 -33.86771 -32.73126 -31.50896 -30.42548 -29.36542 -26.82857 -25.68084 -24.53629 -23.04644 -22.61263 -21.29557 -20.05512 -18.46736 -17.75575 -17.21555 -16.05980 -15.36560 -15.08242 -14.73234 -14.49930 -14.15864 -13.84077 -13.70191 -13.39774 -13.31268 -12.97577 -12.82726 -12.77445 -12.57808 -12.19724 -11.96276 -11.75899 -11.66569 -11.37899 -11.31737 -11.11009 -11.07918 -10.95469 -10.63216 -10.48204 -10.22309 -9.91442 -9.70611 -9.49682 -9.25615 -9.06219 -8.52476 -7.33012 -6.20229 -4.30280 0.59644 1.47670 2.64279 3.08477 3.21074 3.28127 3.30120 3.63962 3.85213 3.97644 4.26266 4.31308 4.53912 4.73358 4.84917 5.06131 5.09873 5.11731 5.14936 5.33607 5.38462 5.45050 5.61609 5.66351 5.72328 5.81852 5.94957 5.99047 6.14813 6.22123 6.31116 6.35285 6.36878 6.57119 6.93195 7.04442 7.25612 7.35504 7.48171 7.57220 7.69971 7.84021 8.09193 8.30089 8.72595 9.24698 9.36781 10.84858 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.020458 B = 0.004718 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.310869 B = 5933.915618 C = 6757.929978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.057 4.057 3 C -0.019 4.019 4 N -0.167 5.167 5 N -0.276 5.276 6 C 0.389 3.611 7 N -0.668 5.668 8 C 0.270 3.730 9 H 0.062 0.938 10 C -0.541 4.541 11 H 0.060 0.940 12 C 0.071 3.929 13 N -0.878 5.878 14 Si 0.901 3.099 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.274 1.274 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.127 4.127 21 C 0.268 3.732 22 N -0.416 5.416 23 C 0.019 3.981 24 C -0.092 4.092 25 C -0.146 4.146 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.400 0.600 32 H 0.266 0.734 33 H 0.030 0.970 34 H 0.104 0.896 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -13.932 8.579 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.166 4.166 4 N -0.014 5.014 5 N -0.132 5.132 6 C 0.142 3.858 7 N -0.291 5.291 8 C 0.169 3.831 9 H 0.080 0.920 10 C -0.579 4.579 11 H 0.078 0.922 12 C -0.133 4.133 13 N -0.515 5.515 14 Si 0.728 3.272 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.199 1.199 18 C -0.167 4.167 19 C -0.194 4.194 20 C -0.147 4.147 21 C -0.047 4.047 22 N -0.093 5.093 23 C 0.005 3.995 24 C -0.130 4.130 25 C -0.204 4.204 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.235 0.765 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.122 0.878 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.854 -12.788 7.978 16.169 hybrid contribution 0.735 1.012 1.511 1.962 sum -5.119 -11.775 9.489 15.966 Atomic orbital electron populations 1.21763 0.94669 1.01593 1.02532 1.20247 0.96076 0.89944 1.03390 1.22075 1.06268 0.99256 0.89028 1.72595 1.03045 1.01153 1.24558 1.73548 1.16756 1.00368 1.22577 1.20196 0.88324 0.88558 0.88712 1.45668 1.62959 1.07900 1.12573 1.19075 0.93290 0.93357 0.77370 0.92017 1.21168 1.22905 1.17992 0.95820 0.92178 1.24827 0.96285 0.97126 0.95019 1.69875 1.41517 1.40618 0.99502 0.86451 0.81428 0.81319 0.77974 1.20442 1.20915 1.19883 1.21967 0.94664 0.96834 1.03272 1.21854 0.97922 0.99309 1.00282 1.16358 1.15653 0.94997 0.87734 1.25106 0.93542 0.93451 0.92646 1.81240 1.09538 1.08174 1.10380 1.20723 0.90894 0.90866 0.97045 1.20696 0.99818 0.99990 0.92534 1.21732 0.96376 1.00701 1.01576 0.92243 0.92847 0.92001 0.89880 0.90434 0.76474 0.92378 0.95094 0.87775 0.95577 0.92038 0.95229 0.90579 0.89022 0.91738 0.92447 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.77 37.16 0.36 -0.90 16 2 C -0.06 -0.55 5.58 -27.88 -0.16 -0.70 16 3 C -0.02 -0.26 6.11 -82.48 -0.50 -0.76 16 4 N -0.17 -2.85 11.39 33.56 0.38 -2.47 16 5 N -0.28 -5.38 7.62 31.40 0.24 -5.14 16 6 C 0.39 7.30 6.12 -154.76 -0.95 6.35 16 7 N -0.67 -13.74 5.08 -54.71 -0.28 -14.02 16 8 C 0.27 6.46 2.25 -69.09 -0.16 6.31 16 9 H 0.06 1.65 7.55 -51.93 -0.39 1.26 16 10 C -0.54 -14.00 8.73 -34.44 -0.30 -14.30 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 13 N -0.88 -23.72 11.29 55.43 0.63 -23.09 16 14 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 19 C -0.14 -2.83 8.45 37.16 0.31 -2.52 16 20 C -0.13 -2.01 5.79 -106.31 -0.62 -2.62 16 21 C 0.27 4.25 12.96 -22.47 -0.29 3.96 16 22 N -0.42 -7.01 18.54 41.84 0.78 -6.24 16 23 C 0.02 0.24 5.21 -103.84 -0.54 -0.30 16 24 C -0.09 -0.88 5.05 -27.88 -0.14 -1.02 16 25 C -0.15 -1.26 9.81 37.16 0.36 -0.90 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.45 7.73 -51.93 -0.40 0.05 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.57 5.97 -51.93 -0.31 0.26 16 31 H 0.40 7.89 7.47 -40.82 -0.30 7.58 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 1.33 7.68 -51.93 -0.40 0.93 16 37 H 0.03 0.59 5.59 -51.93 -0.29 0.30 16 38 H 0.08 0.76 7.28 -51.93 -0.38 0.38 16 39 H 0.09 0.67 6.21 -51.93 -0.32 0.35 16 40 H 0.06 0.50 7.49 -51.93 -0.39 0.11 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -27.56 343.32 -6.95 -34.51 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.00 Total: 4.62 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -2.85 Total: -8.76 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 1.75 Total: -50.96 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.56 -6.95 -34.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273900891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.991 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds