Wall clock time and date at job start Fri Apr 10 2020 19:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46627 * 2 1 4 4 N 1.31897 * 119.90598 * 271.17148 * 3 2 1 5 5 N 1.28277 * 122.67331 * 179.68867 * 4 3 2 6 6 C 1.32579 * 122.19595 * 0.59293 * 5 4 3 7 7 N 1.38462 * 120.27971 * 179.69769 * 6 5 4 8 8 C 1.46494 * 119.99874 * 359.72356 * 7 6 5 9 9 H 1.09007 * 109.47183 * 35.00276 * 8 7 6 10 10 C 1.50700 * 109.47072 * 155.00066 * 8 7 6 11 11 H 1.07998 * 119.99906 * 35.17450 * 10 8 7 12 12 C 1.37883 * 120.00054 * 215.17306 * 10 8 7 13 13 N 1.31517 * 120.00008 * 178.53799 * 12 10 8 14 14 Si 1.86792 * 120.00012 * 358.54040 * 12 10 8 15 15 H 1.48497 * 109.47483 * 84.91731 * 14 12 10 16 16 H 1.48500 * 109.47368 * 204.92171 * 14 12 10 17 17 H 1.48508 * 109.47117 * 324.91853 * 14 12 10 18 18 C 1.53001 * 109.47323 * 275.00134 * 8 7 6 19 19 C 1.53004 * 109.47008 * 65.55473 * 18 8 7 20 20 C 1.40774 * 119.44297 * 359.42553 * 6 5 4 21 21 C 1.43197 * 121.19773 * 180.29958 * 20 6 5 22 22 N 5.99388 * 106.76432 * 35.08340 * 2 1 3 23 23 C 1.38457 * 119.90776 * 91.14960 * 3 2 1 24 24 C 1.50697 * 121.05381 * 0.02562 * 23 3 2 25 25 C 1.53000 * 109.47350 * 90.93285 * 24 23 3 26 26 H 1.09002 * 109.47020 * 184.68959 * 1 2 3 27 27 H 1.08999 * 109.47864 * 304.68495 * 1 2 3 28 28 H 1.09001 * 109.47409 * 64.69462 * 1 2 3 29 29 H 1.09000 * 109.46898 * 240.00425 * 2 1 3 30 30 H 1.08992 * 109.47013 * 119.99688 * 2 1 3 31 31 H 0.97001 * 120.00068 * 179.72507 * 7 6 5 32 32 H 0.96997 * 120.00264 * 180.02562 * 13 12 10 33 33 H 1.09001 * 109.47228 * 305.55307 * 18 8 7 34 34 H 1.09005 * 109.47040 * 185.55396 * 18 8 7 35 35 H 1.08998 * 109.47219 * 179.97438 * 19 18 8 36 36 H 1.08996 * 109.46903 * 300.00365 * 19 18 8 37 37 H 1.09000 * 109.46740 * 59.99840 * 19 18 8 38 38 H 1.08998 * 109.47111 * 210.93559 * 24 23 3 39 39 H 1.09005 * 109.47074 * 330.93507 * 24 23 3 40 40 H 1.08997 * 109.47126 * 176.00353 * 25 24 23 41 41 H 1.08999 * 109.46849 * 296.00686 * 25 24 23 42 42 H 1.09003 * 109.46765 * 56.00544 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2293 2.0487 -1.1431 5 7 2.6496 3.2591 -1.2049 6 6 2.9285 3.9663 -0.1188 7 7 3.3859 5.2683 -0.2318 8 6 3.5692 5.8679 -1.5558 9 1 2.7986 5.4977 -2.2322 10 6 3.4641 7.3673 -1.4472 11 1 3.8369 7.8724 -0.5685 12 6 2.8921 8.0942 -2.4697 13 7 2.7743 9.3997 -2.3625 14 14 2.2843 7.2247 -4.0072 15 1 0.9048 6.7241 -3.7803 16 1 2.2842 8.1767 -5.1469 17 1 3.1809 6.0821 -4.3169 18 6 4.9489 5.4914 -2.0997 19 6 5.0074 3.9816 -2.3406 20 6 2.7503 3.3844 1.1506 21 6 3.0339 4.1160 2.3484 22 7 3.2589 4.6964 3.2987 23 6 2.2850 2.0637 1.1999 24 6 2.0667 1.3651 2.5172 25 6 3.3596 0.6678 2.9452 26 1 -0.3633 -1.0242 0.0840 27 1 -0.3635 0.5848 0.8450 28 1 -0.3634 0.4393 -0.9290 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8899 31 1 3.5850 5.7834 0.5656 32 1 2.3715 9.9110 -3.0816 33 1 5.7139 5.7739 -1.3765 34 1 5.1249 6.0163 -3.0387 35 1 5.9901 3.7134 -2.7285 36 1 4.8313 3.4567 -1.4017 37 1 4.2423 3.6992 -3.0638 38 1 1.7807 2.0962 3.2733 39 1 1.2736 0.6251 2.4090 40 1 3.2232 0.2225 3.9307 41 1 3.6073 -0.1120 2.2251 42 1 4.1694 1.3965 2.9846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273900892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:10 Heat of formation + Delta-G solvation = 68.779637 kcal Electronic energy + Delta-G solvation = -23240.777071 eV Core-core repulsion = 20027.926511 eV Total energy + Delta-G solvation = -3212.850560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.12735 -37.33995 -36.84794 -35.40745 -33.89260 -32.67979 -31.96597 -30.61623 -29.49489 -27.29896 -25.76068 -24.61562 -22.87819 -22.65901 -21.43955 -20.21835 -18.50899 -17.81756 -17.59700 -16.20603 -15.57827 -15.23243 -14.86795 -14.45472 -14.14085 -13.93245 -13.74245 -13.56561 -13.36342 -13.09341 -12.86209 -12.78639 -12.68002 -12.49163 -12.06918 -11.97324 -11.87825 -11.73733 -11.42207 -11.16460 -11.14744 -10.95950 -10.77756 -10.56954 -10.22388 -9.91436 -9.88159 -9.57122 -9.39721 -9.22493 -8.77339 -7.45840 -6.30757 -4.36800 0.51624 1.38000 2.61263 3.03682 3.21329 3.30725 3.36771 3.52119 3.79329 3.89181 4.20476 4.26129 4.46416 4.66483 4.75709 5.01088 5.01529 5.03777 5.12425 5.27709 5.32710 5.39167 5.56562 5.59824 5.65741 5.75920 5.88927 5.93757 5.97035 5.99674 6.06855 6.14548 6.15215 6.29829 6.52770 6.69580 6.85814 6.89298 7.18873 7.29855 7.44716 7.60684 7.95424 8.30465 8.69446 9.12666 9.29072 10.80570 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.018193 B = 0.005319 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.694442 B = 5263.212123 C = 5930.669922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 C -0.016 4.016 4 N -0.169 5.169 5 N -0.288 5.288 6 C 0.387 3.613 7 N -0.664 5.664 8 C 0.239 3.761 9 H 0.060 0.940 10 C -0.537 4.537 11 H 0.078 0.922 12 C 0.084 3.916 13 N -0.884 5.884 14 Si 0.872 3.128 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.254 1.254 18 C -0.127 4.127 19 C -0.143 4.143 20 C -0.121 4.121 21 C 0.265 3.735 22 N -0.410 5.410 23 C 0.020 3.980 24 C -0.093 4.093 25 C -0.146 4.146 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.404 0.596 32 H 0.269 0.731 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 -19.478 5.980 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.164 4.164 4 N -0.014 5.014 5 N -0.144 5.144 6 C 0.140 3.860 7 N -0.288 5.288 8 C 0.137 3.863 9 H 0.078 0.922 10 C -0.575 4.575 11 H 0.096 0.904 12 C -0.121 4.121 13 N -0.520 5.520 14 Si 0.698 3.302 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.178 1.178 18 C -0.166 4.166 19 C -0.201 4.201 20 C -0.142 4.142 21 C -0.051 4.051 22 N -0.087 5.087 23 C 0.006 3.994 24 C -0.131 4.131 25 C -0.204 4.204 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.240 0.760 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.469 -18.205 5.494 19.072 hybrid contribution -0.266 0.008 0.689 0.738 sum -1.735 -18.196 6.183 19.296 Atomic orbital electron populations 1.21767 0.94584 1.01684 1.02581 1.20252 0.96134 0.89845 1.03432 1.22086 1.05997 0.99312 0.88963 1.72557 1.02807 1.01380 1.24667 1.73455 1.17244 1.00850 1.22808 1.20257 0.88372 0.88579 0.88815 1.45817 1.63399 1.07460 1.12080 1.19350 0.93925 0.93497 0.79527 0.92221 1.20964 1.41489 0.88339 1.06694 0.90409 1.24931 0.93991 0.94773 0.98419 1.69878 1.42722 1.05943 1.33447 0.86916 0.80534 0.80121 0.82598 1.19672 1.21099 1.17809 1.22118 0.99165 0.94333 1.01010 1.21915 0.99825 0.97319 1.01039 1.16348 1.15262 0.94803 0.87738 1.25065 0.93751 0.93549 0.92689 1.81253 1.09247 1.07894 1.10331 1.20752 0.90706 0.90863 0.97109 1.20710 0.99843 1.00090 0.92483 1.21730 0.96334 1.00691 1.01600 0.92166 0.92760 0.92024 0.89875 0.90355 0.75952 0.92063 0.93062 0.91504 0.94833 0.94102 0.92049 0.90441 0.88958 0.91613 0.91771 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.76 37.16 0.36 -0.86 16 2 C -0.06 -0.52 5.58 -27.88 -0.16 -0.67 16 3 C -0.02 -0.20 6.11 -82.48 -0.50 -0.71 16 4 N -0.17 -2.74 11.39 33.56 0.38 -2.36 16 5 N -0.29 -5.35 7.64 31.40 0.24 -5.11 16 6 C 0.39 6.99 6.14 -154.77 -0.95 6.04 16 7 N -0.66 -13.24 5.09 -54.71 -0.28 -13.51 16 8 C 0.24 5.38 1.84 -69.09 -0.13 5.25 16 9 H 0.06 1.42 4.98 -51.92 -0.26 1.16 16 10 C -0.54 -14.15 9.05 -34.44 -0.31 -14.46 16 11 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 12 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 13 N -0.88 -25.73 13.96 55.43 0.77 -24.96 16 14 Si 0.87 20.72 26.53 -169.99 -4.51 16.21 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.25 -5.77 6.77 56.52 0.38 -5.38 16 18 C -0.13 -2.62 5.51 -26.73 -0.15 -2.77 16 19 C -0.14 -2.64 8.46 37.16 0.31 -2.33 16 20 C -0.12 -1.86 5.79 -106.31 -0.62 -2.47 16 21 C 0.26 4.14 12.96 -22.48 -0.29 3.85 16 22 N -0.41 -6.88 18.54 41.84 0.78 -6.11 16 23 C 0.02 0.24 5.21 -103.84 -0.54 -0.30 16 24 C -0.09 -0.85 5.04 -27.88 -0.14 -0.99 16 25 C -0.15 -1.18 9.81 37.16 0.36 -0.82 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.44 7.70 -51.93 -0.40 0.04 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.53 5.99 -51.93 -0.31 0.22 16 31 H 0.40 7.87 7.52 -40.82 -0.31 7.56 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.42 7.60 -51.93 -0.39 1.02 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.74 5.58 -51.93 -0.29 0.45 16 37 H 0.06 1.17 7.72 -51.93 -0.40 0.77 16 38 H 0.08 0.75 7.28 -51.93 -0.38 0.37 16 39 H 0.09 0.65 6.18 -51.93 -0.32 0.33 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -29.07 342.32 -6.29 -35.36 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.99 Total: 4.36 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.84 Total: -9.03 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 1.89 Total: -52.05 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.51 Total: 16.21 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.07 -6.29 -35.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273900892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.139 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds