Wall clock time and date at job start Fri Apr 10 2020 19:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38312 * 119.96407 * 2 1 4 4 C 1.38263 * 120.15135 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.07340 * 359.97438 * 4 3 2 6 6 C 1.38892 * 119.92470 * 0.02562 * 5 4 3 7 7 N 1.39678 * 120.07515 * 179.97438 * 6 5 4 8 8 C 1.46959 * 110.99784 * 359.97438 * 7 6 5 9 9 C 1.53054 * 109.36294 * 183.18732 * 8 7 6 10 10 N 1.46954 * 109.36487 * 301.60244 * 9 8 7 11 11 C 1.46900 * 111.00014 * 183.19120 * 10 9 8 12 12 H 1.08993 * 109.47272 * 188.52823 * 11 10 9 13 13 C 1.53008 * 109.46739 * 308.53011 * 11 10 9 14 14 C 1.53000 * 109.47343 * 68.52603 * 11 10 9 15 15 C 1.50693 * 109.47106 * 63.71809 * 14 11 10 16 16 H 1.07995 * 119.99948 * 5.07331 * 15 14 11 17 17 C 1.37884 * 119.99991 * 185.07528 * 15 14 11 18 18 N 1.31510 * 119.99778 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99876 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47395 * 60.00067 * 19 17 15 21 21 H 1.48499 * 109.47165 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47103 * 299.99909 * 19 17 15 23 23 C 1.46946 * 110.88188 * 59.32119 * 10 9 8 24 24 C 1.46954 * 111.00313 * 123.79724 * 7 6 5 25 25 C 1.38091 * 119.96208 * 180.28019 * 2 1 3 26 26 H 1.09000 * 109.47307 * 90.00036 * 1 2 3 27 27 H 1.09003 * 109.47210 * 209.99878 * 1 2 3 28 28 H 1.08999 * 109.47268 * 330.00122 * 1 2 3 29 29 H 1.07993 * 119.92091 * 0.04832 * 3 2 1 30 30 H 1.07994 * 119.96730 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.03907 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.48962 * 63.22505 * 8 7 6 33 33 H 1.08996 * 109.51177 * 303.16941 * 8 7 6 34 34 H 1.09001 * 109.48632 * 181.63364 * 9 8 7 35 35 H 1.08994 * 109.48486 * 61.57251 * 9 8 7 36 36 H 1.08993 * 109.47392 * 59.99886 * 13 11 10 37 37 H 1.09000 * 109.46912 * 299.99544 * 13 11 10 38 38 H 1.09001 * 109.46945 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47203 * 183.72196 * 14 11 10 40 40 H 1.09001 * 109.47344 * 303.71503 * 14 11 10 41 41 H 0.97004 * 119.99544 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.49162 * 60.64345 * 23 10 9 43 43 H 1.09005 * 109.49132 * 180.71379 * 23 10 9 44 44 H 1.09002 * 109.48730 * 296.78000 * 24 7 6 45 45 H 1.08999 * 109.48633 * 56.82156 * 24 7 6 46 46 H 1.07997 * 120.03497 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2765 0.0097 -0.0005 6 6 3.5859 -1.1954 -0.0005 7 7 4.2866 -2.4037 -0.0011 8 6 5.7377 -2.1709 -0.0022 9 6 6.4670 -3.5141 -0.0831 10 7 6.0718 -4.3526 1.0573 11 6 6.8088 -5.6233 1.0568 12 1 6.3931 -6.2848 1.8168 13 6 6.6849 -6.2841 -0.3177 14 6 8.2839 -5.3575 1.3637 15 6 8.4136 -4.7908 2.7540 16 1 7.5431 -4.7121 3.3883 17 6 9.6435 -4.3728 3.2161 18 7 10.7036 -4.4692 2.4438 19 14 9.8043 -3.6710 4.9398 20 1 9.3760 -4.6903 5.9313 21 1 11.2196 -3.2992 5.1929 22 1 8.9453 -2.4662 5.0659 23 6 4.6209 -4.5853 1.0583 24 6 3.8911 -3.2424 1.1390 25 6 2.1966 -1.1963 -0.0059 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6559 2.1324 0.0008 30 1 4.1168 2.1401 -0.0001 31 1 5.3564 0.0139 -0.0005 32 1 6.0241 -1.6563 0.9150 33 1 6.0074 -1.5583 -0.8624 34 1 7.5435 -3.3456 -0.0548 35 1 6.2015 -4.0165 -1.0132 36 1 7.1006 -5.6227 -1.0777 37 1 5.6340 -6.4735 -0.5363 38 1 7.2314 -7.2273 -0.3180 39 1 8.8427 -6.2912 1.2983 40 1 8.6825 -4.6444 0.6420 41 1 11.5688 -4.1747 2.7689 42 1 4.3344 -5.1000 0.1412 43 1 4.3514 -5.1978 1.9188 44 1 4.1563 -2.7401 2.0693 45 1 2.8146 -3.4105 1.1105 46 1 1.6566 -2.1316 -0.0108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276315813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:13 Heat of formation + Delta-G solvation = 18.140313 kcal Electronic energy + Delta-G solvation = -23319.514948 eV Core-core repulsion = 20208.008846 eV Total energy + Delta-G solvation = -3111.506102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42357 -39.71454 -37.41279 -34.93481 -33.57545 -32.69100 -32.02657 -30.28345 -29.14779 -27.79635 -26.76921 -25.14016 -24.76221 -22.85864 -22.09894 -21.26451 -19.96460 -18.34934 -18.29721 -16.89605 -16.64661 -16.57956 -16.35142 -15.84065 -15.56808 -15.19493 -15.13001 -14.71063 -14.54306 -14.42994 -14.07274 -13.85937 -13.69049 -13.28448 -13.10057 -13.02986 -12.80285 -12.69600 -12.57610 -12.44319 -12.41942 -12.26192 -12.03451 -11.98197 -11.70186 -11.55206 -11.11454 -10.97635 -10.61376 -10.47200 -9.61166 -8.94526 -8.77906 -8.09711 -6.13935 0.45514 0.50079 1.40746 1.42939 1.50376 2.46787 2.62624 2.95905 3.06623 3.26942 3.81964 3.89471 4.02193 4.04783 4.18580 4.24718 4.28612 4.34632 4.36348 4.42523 4.51487 4.52949 4.57612 4.59409 4.63453 4.78214 4.86646 4.88130 4.92157 4.93788 5.01281 5.05046 5.08162 5.19923 5.27010 5.29532 5.37295 5.48993 5.55503 5.68688 5.71989 5.89241 5.90320 6.00565 6.28760 6.38141 6.40299 6.51970 6.99114 7.51320 9.02130 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.004048 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.459756 B = 6914.622792 C = 7681.753603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.069 4.069 3 C -0.156 4.156 4 C -0.096 4.096 5 C -0.196 4.196 6 C 0.102 3.898 7 N -0.491 5.491 8 C 0.065 3.935 9 C 0.065 3.935 10 N -0.532 5.532 11 C 0.096 3.904 12 H 0.067 0.933 13 C -0.172 4.172 14 C 0.037 3.963 15 C -0.497 4.497 16 H 0.055 0.945 17 C -0.003 4.003 18 N -0.939 5.939 19 Si 0.953 3.047 20 H -0.269 1.269 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.056 3.944 24 C 0.070 3.930 25 C -0.152 4.152 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.037 0.963 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.058 0.942 39 H -0.009 1.009 40 H -0.002 1.002 41 H 0.258 0.742 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.034 0.966 45 H 0.104 0.896 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.409 8.126 -6.423 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.070 4.070 3 C -0.175 4.175 4 C -0.115 4.115 5 C -0.217 4.217 6 C 0.005 3.995 7 N -0.206 5.206 8 C -0.062 4.062 9 C -0.064 4.064 10 N -0.256 5.256 11 C -0.012 4.012 12 H 0.086 0.914 13 C -0.231 4.231 14 C 0.000 4.000 15 C -0.536 4.536 16 H 0.073 0.927 17 C -0.199 4.199 18 N -0.582 5.582 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.072 4.072 24 C -0.056 4.056 25 C -0.173 4.173 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.009 0.991 40 H 0.016 0.984 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.052 0.948 45 H 0.122 0.878 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.193 8.063 -6.391 22.663 hybrid contribution 1.084 0.185 0.687 1.297 sum -19.109 8.248 -5.704 21.581 Atomic orbital electron populations 1.20829 0.89066 1.03670 1.03167 1.20130 0.97466 0.92354 0.97015 1.21250 0.94013 0.98381 1.03829 1.21246 0.94869 0.97699 0.97645 1.21480 1.00410 0.92711 1.07075 1.19186 0.93619 0.88864 0.97838 1.59312 1.05808 1.14079 1.41422 1.22216 0.85800 0.97094 1.01072 1.22031 0.99077 0.93018 0.92236 1.62169 1.04580 1.16392 1.42483 1.21609 0.95248 0.88882 0.95478 0.91443 1.22366 1.01594 1.00966 0.98149 1.19030 0.90796 0.94536 0.95639 1.21419 0.93228 1.38886 1.00034 0.92666 1.25802 0.95930 0.97033 1.01140 1.70080 0.99729 1.50137 1.38216 0.85680 0.76621 0.78965 0.80781 1.19461 1.21289 1.20044 1.22217 0.87490 0.96155 1.01375 1.22268 1.00531 0.92770 0.89993 1.20814 0.91675 0.98926 1.05852 0.90197 0.90950 0.90285 0.84055 0.84455 0.86149 0.94505 0.89161 0.92022 0.93744 0.93130 0.91690 0.92312 0.99116 0.98367 0.93298 0.93631 0.89658 0.94807 0.87836 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.23 0.71 -0.70 16 2 C -0.07 -1.34 5.88 -19.88 -0.12 -1.46 16 3 C -0.16 -2.99 9.70 22.29 0.22 -2.77 16 4 C -0.10 -2.08 10.04 22.25 0.22 -1.86 16 5 C -0.20 -5.13 8.82 22.40 0.20 -4.93 16 6 C 0.10 2.76 5.63 38.21 0.22 2.97 16 7 N -0.49 -14.11 4.75 -694.78 -3.30 -17.41 16 8 C 0.07 2.09 4.30 86.31 0.37 2.46 16 9 C 0.06 2.33 4.70 86.31 0.41 2.73 16 10 N -0.53 -20.01 4.32 -870.50 -3.76 -23.78 16 11 C 0.10 3.87 2.26 44.92 0.10 3.97 16 12 H 0.07 2.72 7.98 -2.39 -0.02 2.70 16 13 C -0.17 -5.75 8.39 71.98 0.60 -5.15 16 14 C 0.04 1.93 4.40 29.85 0.13 2.06 16 15 C -0.50 -28.24 8.80 25.60 0.23 -28.01 16 16 H 0.06 3.10 7.75 -2.91 -0.02 3.08 16 17 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 18 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 19 Si 0.95 45.76 29.54 68.60 2.03 47.79 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 23 C 0.06 1.66 5.36 86.31 0.46 2.12 16 24 C 0.07 1.92 5.38 86.31 0.46 2.39 16 25 C -0.15 -3.49 8.85 22.40 0.20 -3.29 16 26 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 28 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 29 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 31 H 0.12 3.21 5.81 -2.91 -0.02 3.19 16 32 H 0.04 1.31 7.58 -2.39 -0.02 1.29 16 33 H 0.09 2.62 7.17 -2.39 -0.02 2.60 16 34 H 0.06 2.60 6.37 -2.39 -0.02 2.59 16 35 H 0.04 1.51 6.41 -2.39 -0.02 1.49 16 36 H 0.05 1.72 6.39 -2.39 -0.02 1.71 16 37 H 0.06 1.86 6.85 -2.39 -0.02 1.84 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.00 -0.11 6.42 -2.39 -0.02 -0.13 16 41 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.05 1.28 6.85 -2.39 -0.02 1.26 16 43 H 0.09 2.40 8.05 -2.38 -0.02 2.38 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.10 2.29 6.83 -2.39 -0.02 2.28 16 46 H 0.13 2.65 7.20 -2.91 -0.02 2.63 16 Total: -1.00 -65.57 352.01 1.06 -64.51 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.94 Total: 15.58 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 4.87 Total: -29.18 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -6.78 Total: -98.69 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -65.57 1.06 -64.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276315813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.647 kcal (2) G-P(sol) polarization free energy of solvation -65.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds