Wall clock time and date at job start Fri Apr 10 2020 19:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38303 * 119.96245 * 2 1 4 4 C 1.38261 * 120.15023 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07766 * 359.97263 * 4 3 2 6 6 C 1.38894 * 119.91835 * 0.02562 * 5 4 3 7 7 N 1.39675 * 120.06870 * 179.97438 * 6 5 4 8 8 C 1.46951 * 111.00466 * 0.02562 * 7 6 5 9 9 C 1.53050 * 109.36620 * 183.18530 * 8 7 6 10 10 N 1.46947 * 109.36678 * 301.59685 * 9 8 7 11 11 C 1.46904 * 111.00539 * 183.18667 * 10 9 8 12 12 H 1.09008 * 109.46730 * 55.00077 * 11 10 9 13 13 C 1.52994 * 109.47162 * 295.00479 * 11 10 9 14 14 C 1.52997 * 109.47449 * 174.99909 * 11 10 9 15 15 C 1.50701 * 109.47212 * 295.00105 * 14 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.46960 * 110.88088 * 59.31796 * 10 9 8 24 24 C 1.46960 * 110.99635 * 123.80227 * 7 6 5 25 25 C 1.38087 * 119.96076 * 180.27332 * 2 1 3 26 26 H 1.08994 * 109.47381 * 90.00162 * 1 2 3 27 27 H 1.09002 * 109.47058 * 210.00219 * 1 2 3 28 28 H 1.08997 * 109.47279 * 330.00014 * 1 2 3 29 29 H 1.08005 * 119.92817 * 0.04445 * 3 2 1 30 30 H 1.08001 * 119.96446 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.04247 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.49134 * 63.21743 * 8 7 6 33 33 H 1.09007 * 109.50341 * 303.16427 * 8 7 6 34 34 H 1.09006 * 109.49101 * 181.62973 * 9 8 7 35 35 H 1.09001 * 109.50748 * 61.57623 * 9 8 7 36 36 H 1.09008 * 109.46970 * 299.99452 * 13 11 10 37 37 H 1.08996 * 109.47654 * 59.99214 * 13 11 10 38 38 H 1.09000 * 109.47476 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47153 * 175.00107 * 14 11 10 40 40 H 1.09001 * 109.46832 * 55.00298 * 14 11 10 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.48599 * 60.65300 * 23 10 9 43 43 H 1.09000 * 109.49267 * 180.70898 * 23 10 9 44 44 H 1.08995 * 109.49169 * 296.77617 * 24 7 6 45 45 H 1.09001 * 109.49112 * 56.82480 * 24 7 6 46 46 H 1.08000 * 120.04067 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0005 5 6 4.2765 0.0097 -0.0005 6 6 3.5859 -1.1953 -0.0005 7 7 4.2867 -2.4036 -0.0010 8 6 5.7377 -2.1709 -0.0009 9 6 6.4671 -3.5140 -0.0817 10 7 6.0712 -4.3528 1.0580 11 6 6.8081 -5.6237 1.0576 12 1 7.8793 -5.4225 1.0362 13 6 6.4176 -6.4392 -0.1765 14 6 6.4629 -6.4139 2.3214 15 6 6.9583 -5.6662 3.5324 16 1 7.4680 -4.7216 3.4127 17 6 6.7599 -6.1875 4.7934 18 7 6.1388 -7.3375 4.9391 19 14 7.3733 -5.2603 6.2945 20 1 8.0334 -4.0019 5.8635 21 1 6.2259 -4.9386 7.1806 22 1 8.3478 -6.1032 7.0328 23 6 4.6201 -4.5855 1.0580 24 6 3.8911 -3.2422 1.1391 25 6 2.1967 -1.1963 -0.0057 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5138 29 1 1.6560 2.1325 0.0007 30 1 4.1167 2.1401 -0.0010 31 1 5.3565 0.0139 -0.0005 32 1 6.0235 -1.6565 0.9166 33 1 6.0080 -1.5579 -0.8608 34 1 7.5437 -3.3455 -0.0526 35 1 6.2027 -4.0164 -1.0122 36 1 5.3465 -6.6404 -0.1550 37 1 6.6635 -5.8763 -1.0769 38 1 6.9647 -7.3820 -0.1771 39 1 6.9395 -7.3933 2.2790 40 1 5.3821 -6.5383 2.3882 41 1 5.9995 -7.7045 5.8262 42 1 4.3344 -5.1000 0.1405 43 1 4.3501 -5.1984 1.9180 44 1 4.1562 -2.7399 2.0694 45 1 2.8145 -3.4105 1.1106 46 1 1.6567 -2.1316 -0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276315814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:18 Heat of formation + Delta-G solvation = 35.655127 kcal Electronic energy + Delta-G solvation = -23322.640970 eV Core-core repulsion = 20211.894367 eV Total energy + Delta-G solvation = -3110.746603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.32925 -38.51914 -36.15955 -33.02162 -32.52283 -31.36636 -30.65190 -29.14033 -27.33283 -26.92351 -25.51102 -23.73812 -23.02500 -21.63886 -21.24140 -19.83737 -18.57052 -17.21187 -16.18414 -15.79351 -15.64579 -15.13946 -14.64008 -14.59005 -14.29563 -13.94087 -13.79880 -13.75190 -13.46646 -13.27593 -12.90525 -12.35175 -12.17065 -12.07532 -11.83737 -11.73118 -11.53803 -11.41138 -11.23907 -11.10352 -10.96304 -10.63993 -10.56794 -10.38846 -10.31710 -9.90118 -9.58198 -9.15637 -8.98376 -8.72735 -8.28014 -7.74440 -7.50360 -5.90923 -3.88855 1.36669 1.42469 3.36572 3.44367 3.49725 3.63405 3.97717 4.48962 4.55468 4.77238 4.82730 5.02256 5.12712 5.25506 5.32696 5.35736 5.36600 5.46019 5.47037 5.54239 5.62138 5.68759 5.70597 5.77027 5.78324 5.88839 5.94282 5.96405 6.02678 6.07727 6.15326 6.30395 6.33918 6.41049 6.45261 6.58899 6.60457 6.70335 6.81679 6.95648 7.12181 7.38038 7.52158 7.65719 7.87193 7.98806 8.10615 8.55781 9.17650 9.73291 11.20965 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.004063 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.464002 B = 6889.183303 C = 7490.019068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.064 4.064 3 C -0.156 4.156 4 C -0.091 4.091 5 C -0.179 4.179 6 C 0.126 3.874 7 N -0.492 5.492 8 C 0.056 3.944 9 C 0.051 3.949 10 N -0.512 5.512 11 C 0.087 3.913 12 H 0.070 0.930 13 C -0.184 4.184 14 C 0.028 3.972 15 C -0.491 4.491 16 H 0.061 0.939 17 C 0.051 3.949 18 N -0.903 5.903 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.055 3.945 24 C 0.064 3.936 25 C -0.144 4.144 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.052 0.948 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.257 0.743 42 H 0.035 0.965 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 13.609 -12.140 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.065 4.065 3 C -0.175 4.175 4 C -0.110 4.110 5 C -0.200 4.200 6 C 0.028 3.972 7 N -0.207 5.207 8 C -0.071 4.071 9 C -0.077 4.077 10 N -0.236 5.236 11 C -0.021 4.021 12 H 0.088 0.912 13 C -0.243 4.243 14 C -0.009 4.009 15 C -0.529 4.529 16 H 0.079 0.921 17 C -0.148 4.148 18 N -0.544 5.544 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.214 1.214 23 C -0.073 4.073 24 C -0.061 4.061 25 C -0.164 4.164 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.329 13.392 -11.979 19.405 hybrid contribution 0.345 0.388 0.725 0.892 sum -6.984 13.781 -11.254 19.114 Atomic orbital electron populations 1.20784 0.91331 1.02702 1.02190 1.19740 0.95794 0.92820 0.98160 1.20873 0.94190 0.97220 1.05212 1.20946 0.94169 0.97480 0.98359 1.21320 1.00222 0.91955 1.06494 1.19038 0.92916 0.89173 0.96104 1.59273 1.06341 1.13229 1.41818 1.22339 0.85561 0.97962 1.01249 1.22174 0.99179 0.92993 0.93383 1.62306 1.04531 1.17031 1.39698 1.21907 0.97160 0.87389 0.95601 0.91154 1.22512 1.01666 1.00940 0.99153 1.19235 0.97099 0.94337 0.90209 1.21212 1.35522 1.05765 0.90426 0.92115 1.24999 0.95807 0.95039 0.98980 1.69971 1.43293 1.18655 1.22478 0.86596 0.78433 0.80014 0.83297 1.19817 1.21331 1.21364 1.22221 0.88287 0.95068 1.01728 1.22352 0.99614 0.93814 0.90368 1.20657 0.92340 0.97892 1.05531 0.91259 0.91512 0.91655 0.86580 0.86340 0.85627 0.92710 0.90423 0.90523 0.94535 0.92898 0.94011 0.92553 0.96281 0.96217 0.93360 0.94703 0.88245 0.92712 0.90349 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.06 -0.73 5.88 -104.65 -0.62 -1.35 16 3 C -0.16 -1.70 9.70 -39.55 -0.38 -2.08 16 4 C -0.09 -1.02 10.04 -39.61 -0.40 -1.42 16 5 C -0.18 -2.27 8.82 -39.38 -0.35 -2.62 16 6 C 0.13 1.75 5.63 -83.79 -0.47 1.28 16 7 N -0.49 -7.23 4.75 -170.96 -0.81 -8.04 16 8 C 0.06 0.79 4.29 -3.77 -0.02 0.77 16 9 C 0.05 0.79 5.25 -3.77 -0.02 0.77 16 10 N -0.51 -9.53 4.41 -226.49 -1.00 -10.53 16 11 C 0.09 1.74 2.30 -67.71 -0.16 1.59 16 12 H 0.07 1.43 8.11 -51.92 -0.42 1.01 16 13 C -0.18 -3.14 8.49 37.15 0.32 -2.83 16 14 C 0.03 0.70 4.27 -27.88 -0.12 0.58 16 15 C -0.49 -13.55 8.84 -34.44 -0.30 -13.85 16 16 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 17 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 18 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 19 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C 0.06 0.98 4.82 -3.76 -0.02 0.96 16 24 C 0.06 1.00 5.38 -3.76 -0.02 0.98 16 25 C -0.14 -1.85 8.85 -39.38 -0.35 -2.19 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.13 1.47 5.81 -52.49 -0.31 1.17 16 32 H 0.05 0.82 7.58 -51.93 -0.39 0.43 16 33 H 0.08 0.95 7.17 -51.92 -0.37 0.58 16 34 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 35 H 0.04 0.56 6.60 -51.93 -0.34 0.22 16 36 H 0.05 0.91 6.46 -51.92 -0.34 0.57 16 37 H 0.04 0.64 6.59 -51.93 -0.34 0.30 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.52 6.11 -51.93 -0.32 0.20 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.03 0.60 6.46 -51.93 -0.34 0.26 16 43 H 0.10 2.02 6.07 -51.93 -0.32 1.70 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.11 6.83 -51.93 -0.35 0.75 16 46 H 0.12 1.49 7.20 -52.49 -0.38 1.12 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -29.91 351.36 -10.99 -40.91 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.55 Total: 0.29 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -2.64 Total: -18.64 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -1.08 Total: -44.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.91 -10.99 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276315814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.563 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds