Wall clock time and date at job start Fri Apr 10 2020 19:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38303 * 119.96245 * 2 1 4 4 C 1.38261 * 120.15023 * 180.02562 * 3 2 1 5 5 C 1.38125 * 120.07766 * 359.97263 * 4 3 2 6 6 C 1.38894 * 119.91835 * 0.02562 * 5 4 3 7 7 N 1.39675 * 120.06870 * 179.97438 * 6 5 4 8 8 C 1.46951 * 111.00466 * 0.02562 * 7 6 5 9 9 C 1.53050 * 109.36620 * 183.18530 * 8 7 6 10 10 N 1.46947 * 109.36678 * 301.59685 * 9 8 7 11 11 C 1.46904 * 111.00539 * 183.18667 * 10 9 8 12 12 H 1.09008 * 109.46730 * 55.00077 * 11 10 9 13 13 C 1.52994 * 109.47162 * 295.00479 * 11 10 9 14 14 C 1.52997 * 109.47449 * 174.99909 * 11 10 9 15 15 C 1.50701 * 109.47212 * 295.00105 * 14 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.46960 * 110.88088 * 59.31796 * 10 9 8 24 24 C 1.46960 * 110.99635 * 123.80227 * 7 6 5 25 25 C 1.38087 * 119.96076 * 180.27332 * 2 1 3 26 26 H 1.08994 * 109.47381 * 90.00162 * 1 2 3 27 27 H 1.09002 * 109.47058 * 210.00219 * 1 2 3 28 28 H 1.08997 * 109.47279 * 330.00014 * 1 2 3 29 29 H 1.08005 * 119.92817 * 0.04445 * 3 2 1 30 30 H 1.08001 * 119.96446 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.04247 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.49134 * 63.21743 * 8 7 6 33 33 H 1.09007 * 109.50341 * 303.16427 * 8 7 6 34 34 H 1.09006 * 109.49101 * 181.62973 * 9 8 7 35 35 H 1.09001 * 109.50748 * 61.57623 * 9 8 7 36 36 H 1.09008 * 109.46970 * 299.99452 * 13 11 10 37 37 H 1.08996 * 109.47654 * 59.99214 * 13 11 10 38 38 H 1.09000 * 109.47476 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47153 * 175.00107 * 14 11 10 40 40 H 1.09001 * 109.46832 * 55.00298 * 14 11 10 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 42 42 H 1.09002 * 109.48599 * 60.65300 * 23 10 9 43 43 H 1.09000 * 109.49267 * 180.70898 * 23 10 9 44 44 H 1.08995 * 109.49169 * 296.77617 * 24 7 6 45 45 H 1.09001 * 109.49112 * 56.82480 * 24 7 6 46 46 H 1.08000 * 120.04067 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0005 5 6 4.2765 0.0097 -0.0005 6 6 3.5859 -1.1953 -0.0005 7 7 4.2867 -2.4036 -0.0010 8 6 5.7377 -2.1709 -0.0009 9 6 6.4671 -3.5140 -0.0817 10 7 6.0712 -4.3528 1.0580 11 6 6.8081 -5.6237 1.0576 12 1 7.8793 -5.4225 1.0362 13 6 6.4176 -6.4392 -0.1765 14 6 6.4629 -6.4139 2.3214 15 6 6.9583 -5.6662 3.5324 16 1 7.4680 -4.7216 3.4127 17 6 6.7599 -6.1875 4.7934 18 7 6.1388 -7.3375 4.9391 19 14 7.3733 -5.2603 6.2945 20 1 8.0334 -4.0019 5.8635 21 1 6.2259 -4.9386 7.1806 22 1 8.3478 -6.1032 7.0328 23 6 4.6201 -4.5855 1.0580 24 6 3.8911 -3.2422 1.1391 25 6 2.1967 -1.1963 -0.0057 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8899 0.5138 29 1 1.6560 2.1325 0.0007 30 1 4.1167 2.1401 -0.0010 31 1 5.3565 0.0139 -0.0005 32 1 6.0235 -1.6565 0.9166 33 1 6.0080 -1.5579 -0.8608 34 1 7.5437 -3.3455 -0.0526 35 1 6.2027 -4.0164 -1.0122 36 1 5.3465 -6.6404 -0.1550 37 1 6.6635 -5.8763 -1.0769 38 1 6.9647 -7.3820 -0.1771 39 1 6.9395 -7.3933 2.2790 40 1 5.3821 -6.5383 2.3882 41 1 5.9995 -7.7045 5.8262 42 1 4.3344 -5.1000 0.1405 43 1 4.3501 -5.1984 1.9180 44 1 4.1562 -2.7399 2.0694 45 1 2.8145 -3.4105 1.1106 46 1 1.6567 -2.1316 -0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276315814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:17 Heat of formation + Delta-G solvation = 18.538464 kcal Electronic energy + Delta-G solvation = -23323.383205 eV Core-core repulsion = 20211.894367 eV Total energy + Delta-G solvation = -3111.488837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42230 -39.72467 -37.42115 -34.92513 -33.53468 -32.80846 -31.88972 -30.35300 -29.14947 -27.76332 -26.78013 -25.21190 -24.68592 -22.65734 -22.44171 -21.09874 -19.98902 -18.36450 -18.23826 -16.88198 -16.75571 -16.57307 -16.30597 -15.77446 -15.69229 -15.20411 -14.98431 -14.68534 -14.64284 -14.45946 -14.10763 -13.83105 -13.64108 -13.26946 -13.17480 -13.04760 -12.86140 -12.64876 -12.58418 -12.41815 -12.38786 -12.25888 -12.07057 -11.94123 -11.67785 -11.53102 -11.08572 -10.98357 -10.59693 -10.48149 -9.60749 -8.96328 -8.77069 -8.10655 -6.15106 0.46247 0.50579 1.39628 1.41204 1.53623 2.46450 2.62965 2.98150 3.06948 3.26241 3.81701 3.91103 4.03106 4.04843 4.19979 4.24471 4.30149 4.33859 4.36276 4.42652 4.51927 4.52355 4.58166 4.60736 4.63276 4.78884 4.85579 4.87380 4.93279 4.94815 4.99463 5.03964 5.09789 5.19549 5.26823 5.28940 5.37855 5.49491 5.55319 5.69734 5.72433 5.89711 5.89964 6.02055 6.28595 6.38647 6.39939 6.51488 6.98940 7.50877 9.01458 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.004063 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.464002 B = 6889.183303 C = 7490.019068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 C -0.156 4.156 4 C -0.094 4.094 5 C -0.190 4.190 6 C 0.102 3.898 7 N -0.493 5.493 8 C 0.061 3.939 9 C 0.054 3.946 10 N -0.531 5.531 11 C 0.096 3.904 12 H 0.067 0.933 13 C -0.173 4.173 14 C 0.035 3.965 15 C -0.498 4.498 16 H 0.056 0.944 17 C -0.002 4.002 18 N -0.939 5.939 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.281 1.281 23 C 0.063 3.937 24 C 0.074 3.926 25 C -0.158 4.158 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.132 0.868 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.057 0.943 39 H -0.008 1.008 40 H -0.001 1.001 41 H 0.258 0.742 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.032 0.968 45 H 0.091 0.909 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.593 16.084 -13.160 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.071 4.071 3 C -0.175 4.175 4 C -0.113 4.113 5 C -0.211 4.211 6 C 0.004 3.996 7 N -0.208 5.208 8 C -0.066 4.066 9 C -0.074 4.074 10 N -0.255 5.255 11 C -0.012 4.012 12 H 0.086 0.914 13 C -0.231 4.231 14 C -0.002 4.002 15 C -0.537 4.537 16 H 0.075 0.925 17 C -0.199 4.199 18 N -0.581 5.581 19 Si 0.779 3.221 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.207 1.207 23 C -0.065 4.065 24 C -0.051 4.051 25 C -0.179 4.179 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.149 0.851 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.011 0.989 40 H 0.018 0.982 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.050 0.950 45 H 0.109 0.891 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.591 15.890 -13.016 21.898 hybrid contribution 0.377 -0.315 1.020 1.133 sum -7.213 15.574 -11.996 20.940 Atomic orbital electron populations 1.20833 0.89408 1.03496 1.03130 1.20103 0.97334 0.92473 0.97220 1.21255 0.94336 0.98103 1.03823 1.21283 0.94636 0.97942 0.97431 1.21495 1.00716 0.92145 1.06721 1.19186 0.93437 0.89112 0.97859 1.59301 1.06608 1.13938 1.40945 1.22325 0.85296 0.97253 1.01705 1.22233 0.99956 0.92973 0.92205 1.62198 1.04737 1.16588 1.42012 1.21610 0.97124 0.88084 0.94431 0.91450 1.22368 1.01366 1.00839 0.98574 1.19084 0.95304 0.93623 0.92225 1.21503 1.34968 1.05570 0.91610 0.92550 1.25804 0.96119 0.95882 1.02053 1.70091 1.44629 1.20188 1.23177 0.85574 0.77936 0.78916 0.79645 1.19110 1.21036 1.20728 1.22046 0.88230 0.95828 1.00403 1.22161 1.00004 0.92795 0.90159 1.20820 0.92226 0.98704 1.06121 0.90145 0.91454 0.90179 0.84056 0.83933 0.85069 0.93876 0.88055 0.89545 0.93806 0.93285 0.91549 0.92374 0.98932 0.98239 0.93284 0.94002 0.91707 0.94968 0.89117 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.93 16 2 C -0.07 -1.46 5.88 -19.88 -0.12 -1.57 16 3 C -0.16 -2.96 9.70 22.29 0.22 -2.75 16 4 C -0.09 -1.88 10.04 22.25 0.22 -1.66 16 5 C -0.19 -4.51 8.82 22.40 0.20 -4.31 16 6 C 0.10 2.72 5.63 38.21 0.22 2.93 16 7 N -0.49 -14.12 4.75 -694.78 -3.30 -17.42 16 8 C 0.06 1.65 4.29 86.31 0.37 2.02 16 9 C 0.05 1.61 5.25 86.31 0.45 2.06 16 10 N -0.53 -19.86 4.41 -870.47 -3.84 -23.70 16 11 C 0.10 3.86 2.30 44.91 0.10 3.96 16 12 H 0.07 2.74 8.11 -2.38 -0.02 2.72 16 13 C -0.17 -5.79 8.49 71.98 0.61 -5.18 16 14 C 0.03 1.79 4.27 29.85 0.13 1.92 16 15 C -0.50 -28.18 8.84 25.60 0.23 -27.95 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 17 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 18 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 19 Si 0.95 45.60 29.54 68.60 2.03 47.63 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 C 0.06 2.30 4.82 86.31 0.42 2.71 16 24 C 0.07 2.38 5.38 86.31 0.46 2.85 16 25 C -0.16 -3.91 8.85 22.40 0.20 -3.71 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 28 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 29 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.13 2.85 5.81 -2.91 -0.02 2.84 16 32 H 0.04 1.26 7.58 -2.39 -0.02 1.25 16 33 H 0.10 2.26 7.17 -2.38 -0.02 2.24 16 34 H 0.09 2.38 8.12 -2.38 -0.02 2.36 16 35 H 0.04 1.25 6.60 -2.39 -0.02 1.23 16 36 H 0.05 1.67 6.46 -2.38 -0.02 1.65 16 37 H 0.07 1.90 6.59 -2.39 -0.02 1.89 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.00 -0.03 6.11 -2.39 -0.01 -0.05 16 41 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.04 1.45 6.46 -2.39 -0.02 1.43 16 43 H 0.06 2.78 6.07 -2.39 -0.01 2.77 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.09 2.61 6.83 -2.39 -0.02 2.60 16 46 H 0.12 2.91 7.20 -2.91 -0.02 2.89 16 Total: -1.00 -65.12 351.36 0.99 -64.13 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.95 Total: 15.80 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 4.88 Total: -29.29 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -6.86 Total: -98.27 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -65.12 0.99 -64.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276315814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.671 kcal (2) G-P(sol) polarization free energy of solvation -65.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds