Wall clock time and date at job start Fri Apr 10 2020 19:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.53594 * 2 1 4 4 C 1.53035 * 109.50301 * 239.90198 * 2 1 3 5 5 N 1.46850 * 109.52463 * 180.88186 * 4 2 1 6 6 C 1.46903 * 111.00069 * 185.84075 * 5 4 2 7 7 C 1.50696 * 109.47085 * 190.00098 * 6 5 4 8 8 C 1.38238 * 119.99547 * 269.72658 * 7 6 5 9 9 C 1.38232 * 120.00005 * 179.79089 * 8 7 6 10 10 C 1.38236 * 119.99851 * 0.45652 * 9 8 7 11 11 C 1.38237 * 119.99790 * 359.77048 * 10 9 8 12 12 C 1.38227 * 120.00352 * 0.02562 * 11 10 9 13 13 C 1.46842 * 111.19686 * 61.73710 * 5 4 2 14 14 C 1.53041 * 109.58041 * 298.29152 * 13 5 4 15 15 C 1.53114 * 109.27216 * 59.08512 * 14 13 5 16 16 H 1.09003 * 109.52625 * 62.38025 * 15 14 13 17 17 N 1.46506 * 109.52318 * 182.50675 * 15 14 13 18 18 C 1.36938 * 119.99589 * 274.87567 * 17 15 14 19 19 H 1.07999 * 120.00325 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99408 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00325 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99550 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47397 * 90.00455 * 22 20 18 24 24 H 1.48510 * 109.46813 * 210.00284 * 22 20 18 25 25 H 1.48495 * 109.47179 * 329.99902 * 22 20 18 26 26 H 1.09002 * 109.46791 * 299.90166 * 1 2 3 27 27 H 1.08998 * 109.46793 * 59.90121 * 1 2 3 28 28 H 1.08994 * 109.46987 * 179.90392 * 1 2 3 29 29 H 1.08995 * 109.47129 * 180.09966 * 3 2 1 30 30 H 1.08999 * 109.46860 * 300.09487 * 3 2 1 31 31 H 1.09002 * 109.47264 * 60.10041 * 3 2 1 32 32 H 1.09000 * 109.46057 * 300.89552 * 4 2 1 33 33 H 1.09003 * 109.46598 * 60.86134 * 4 2 1 34 34 H 1.09005 * 109.46689 * 309.99322 * 6 5 4 35 35 H 1.08999 * 109.47388 * 69.99595 * 6 5 4 36 36 H 1.08001 * 120.00073 * 359.97438 * 8 7 6 37 37 H 1.08001 * 120.00877 * 180.24720 * 9 8 7 38 38 H 1.08003 * 120.00191 * 179.79192 * 10 9 8 39 39 H 1.08007 * 119.99744 * 179.97438 * 11 10 9 40 40 H 1.07994 * 120.00391 * 179.97438 * 12 11 10 41 41 H 1.09000 * 109.46323 * 58.28179 * 13 5 4 42 42 H 1.09006 * 109.45608 * 178.25165 * 13 5 4 43 43 H 1.09001 * 109.45091 * 299.17868 * 14 13 5 44 44 H 1.09000 * 109.55775 * 179.05772 * 14 13 5 45 45 H 0.96995 * 120.00050 * 94.59775 * 17 15 14 46 46 H 0.97000 * 119.99693 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0409 -0.7234 -1.2480 5 7 3.5093 -0.7421 -1.2379 6 6 4.0373 -1.3059 -2.4875 7 6 5.5198 -1.5371 -2.3473 8 6 6.4109 -0.5401 -2.6977 9 6 7.7706 -0.7505 -2.5651 10 6 8.2396 -1.9613 -2.0910 11 6 7.3486 -2.9600 -1.7450 12 6 5.9888 -2.7481 -1.8736 13 6 4.0229 -1.4730 -0.0724 14 6 3.5712 -0.7733 1.2116 15 6 2.0413 -0.7238 1.2487 16 1 1.6443 -1.7388 1.2696 17 7 1.6037 -0.0023 2.4464 18 6 1.4773 -0.6660 3.6375 19 1 1.6997 -1.7213 3.6939 20 6 1.0632 0.0178 4.7723 21 7 0.7916 1.3038 4.7034 22 14 0.8900 -0.8877 6.3970 23 1 2.1772 -0.8307 7.1352 24 1 -0.1754 -0.2471 7.2096 25 1 0.5302 -2.3049 6.1380 26 1 -0.3633 0.5123 0.8909 27 1 -0.3633 0.5154 -0.8891 28 1 -0.3633 -1.0276 -0.0017 29 1 3.1316 1.4407 -0.0018 30 1 1.6775 1.9566 -0.8891 31 1 1.6804 1.9557 0.8909 32 1 1.6647 -1.7464 -1.2544 33 1 1.6905 -0.2023 -2.1390 34 1 3.5401 -2.2530 -2.6973 35 1 3.8538 -0.6100 -3.3061 36 1 6.0446 0.4044 -3.0723 37 1 8.4668 0.0298 -2.8351 38 1 9.3021 -2.1270 -1.9905 39 1 7.7151 -3.9062 -1.3750 40 1 5.2927 -3.5284 -1.6038 41 1 3.6375 -2.4925 -0.0843 42 1 5.1121 -1.4960 -0.1094 43 1 3.9687 0.2414 1.2311 44 1 3.9386 -1.3254 2.0766 45 1 1.4075 0.9463 2.3965 46 1 0.5026 1.7816 5.4966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282561898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:43 Heat of formation + Delta-G solvation = 19.865435 kcal Electronic energy + Delta-G solvation = -23656.992109 eV Core-core repulsion = 20545.560813 eV Total energy + Delta-G solvation = -3111.431296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.10507 -39.83702 -36.87314 -35.09959 -33.27335 -32.45600 -31.73170 -30.85630 -28.04494 -27.36278 -27.05054 -25.40332 -23.49443 -23.11380 -22.72641 -21.35528 -19.62231 -18.87013 -17.56414 -17.13381 -16.43918 -16.34025 -16.16876 -15.80099 -15.43836 -15.35624 -15.06923 -14.65934 -14.36830 -14.19037 -13.95508 -13.74596 -13.41787 -13.15530 -13.02852 -12.85108 -12.72373 -12.67028 -12.56293 -12.36728 -12.22161 -12.10661 -11.83482 -11.81573 -11.79332 -11.49482 -11.21671 -10.92902 -10.78048 -9.74555 -9.66483 -9.09773 -8.92215 -7.90827 -5.17078 0.46349 0.56422 1.46096 1.47457 1.55524 2.57590 2.78850 3.23826 3.41676 3.77827 3.86002 3.91242 4.02160 4.11217 4.19080 4.21249 4.32203 4.37132 4.43699 4.47336 4.57577 4.66008 4.67532 4.73673 4.75928 4.86420 4.86980 4.91853 4.95025 5.08097 5.16697 5.17062 5.19296 5.23371 5.29210 5.37458 5.48230 5.51406 5.58630 5.61396 5.67767 5.75166 5.76369 6.15149 6.19054 6.25318 6.32343 7.38393 8.17509 8.41472 9.32849 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.004112 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.959013 B = 6807.170228 C = 7593.981035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.119 4.119 4 C 0.078 3.922 5 N -0.531 5.531 6 C 0.096 3.904 7 C -0.090 4.090 8 C -0.112 4.112 9 C -0.130 4.130 10 C -0.129 4.129 11 C -0.131 4.131 12 C -0.125 4.125 13 C 0.071 3.929 14 C -0.125 4.125 15 C 0.184 3.816 16 H 0.027 0.973 17 N -0.730 5.730 18 C -0.234 4.234 19 H 0.069 0.931 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.967 3.033 23 H -0.290 1.290 24 H -0.296 1.296 25 H -0.272 1.272 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.033 0.967 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.120 0.880 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.039 0.961 45 H 0.375 0.625 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.682 -6.370 -19.508 23.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.061 4.061 3 C -0.176 4.176 4 C -0.050 4.050 5 N -0.256 5.256 6 C -0.031 4.031 7 C -0.091 4.091 8 C -0.130 4.130 9 C -0.148 4.148 10 C -0.147 4.147 11 C -0.149 4.149 12 C -0.144 4.144 13 C -0.057 4.057 14 C -0.165 4.165 15 C 0.075 3.925 16 H 0.045 0.955 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.086 0.914 20 C -0.266 4.266 21 N -0.620 5.620 22 Si 0.796 3.204 23 H -0.217 1.217 24 H -0.223 1.223 25 H -0.197 1.197 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.138 0.862 41 H 0.045 0.955 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.209 0.791 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.798 -6.039 -19.355 22.971 hybrid contribution -0.537 -0.780 1.503 1.776 sum 10.262 -6.819 -17.851 21.690 Atomic orbital electron populations 1.21672 0.94330 1.01206 1.01297 1.20724 0.95207 0.96283 0.93921 1.21615 1.01294 0.94598 1.00090 1.22068 0.86567 0.98625 0.97745 1.62005 1.08015 1.53790 1.01746 1.21120 0.90447 0.99093 0.92440 1.19863 0.95377 0.94337 0.99494 1.21240 0.93333 0.98821 0.99615 1.21445 0.95730 0.97959 0.99633 1.21454 1.00660 0.93641 0.98967 1.21380 0.93153 1.00180 1.00216 1.21242 0.96270 0.97165 0.99728 1.22005 0.99804 0.94222 0.89676 1.22151 0.98428 1.00064 0.95862 1.20427 0.91982 0.93741 0.86328 0.95494 1.42655 1.80150 1.09255 1.04946 1.19578 1.35679 0.93386 0.87958 0.91353 1.25439 1.03491 0.96616 1.01076 1.69812 1.54439 1.08753 1.29025 0.85235 0.76860 0.77948 0.80324 1.21704 1.22257 1.19682 0.94631 0.90965 0.93346 0.92227 0.91677 0.95578 0.94857 0.88697 0.93572 0.88566 0.85183 0.84389 0.84327 0.84701 0.86166 0.95505 0.90552 0.92995 0.94185 0.79072 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 8.35 71.98 0.60 -3.56 16 2 C -0.06 -1.98 0.57 -52.13 -0.03 -2.01 16 3 C -0.12 -3.98 7.84 71.98 0.56 -3.42 16 4 C 0.08 2.02 4.14 86.32 0.36 2.37 16 5 N -0.53 -13.66 4.08 -900.91 -3.68 -17.33 16 6 C 0.10 1.95 5.43 85.56 0.46 2.41 16 7 C -0.09 -1.90 4.12 -19.87 -0.08 -1.98 16 8 C -0.11 -2.23 9.70 22.27 0.22 -2.01 16 9 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 10 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 11 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 12 C -0.13 -2.57 7.79 22.27 0.17 -2.40 16 13 C 0.07 2.11 4.57 86.33 0.39 2.50 16 14 C -0.12 -4.72 5.33 30.65 0.16 -4.56 16 15 C 0.18 7.50 1.95 45.07 0.09 7.58 16 16 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 17 N -0.73 -37.40 4.41 -322.55 -1.42 -38.82 16 18 C -0.23 -13.26 9.93 84.03 0.83 -12.42 16 19 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 20 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 21 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 22 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 26 H 0.03 1.41 7.63 -2.39 -0.02 1.39 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 2.05 6.02 -2.39 -0.01 2.04 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.03 1.02 6.41 -2.39 -0.02 1.01 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 2.04 8.12 -2.39 -0.02 2.02 16 34 H 0.05 0.89 8.02 -2.38 -0.02 0.87 16 35 H 0.10 1.68 8.08 -2.39 -0.02 1.66 16 36 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 38 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 2.23 5.64 -2.38 -0.01 2.21 16 43 H 0.05 2.11 6.59 -2.39 -0.02 2.09 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.38 20.65 5.87 -92.71 -0.54 20.11 16 46 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -64.92 353.54 2.49 -62.43 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.40 Total: 32.21 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 4.88 Total: -27.70 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.82 Total: -116.14 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -64.92 2.49 -62.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282561898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.296 kcal (2) G-P(sol) polarization free energy of solvation -64.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds