Wall clock time and date at job start Fri Apr 10 2020 19:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47018 * 2 1 4 4 C 1.53006 * 109.47107 * 62.89662 * 3 2 1 5 5 C 1.52999 * 109.47072 * 185.26481 * 4 3 2 6 6 C 1.52998 * 109.46780 * 182.89372 * 3 2 1 7 7 N 1.46502 * 109.47021 * 70.09154 * 6 3 2 8 8 C 1.46496 * 119.99808 * 262.58070 * 7 6 3 9 9 C 1.50698 * 109.47378 * 100.11873 * 8 7 6 10 10 H 1.07994 * 119.99876 * 4.66855 * 9 8 7 11 11 C 1.37870 * 120.00045 * 184.67456 * 9 8 7 12 12 N 1.31515 * 120.00090 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00178 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47094 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47458 * 119.99953 * 13 11 9 16 16 H 1.48500 * 109.47111 * 240.00344 * 13 11 9 17 17 C 1.38424 * 119.99978 * 82.57965 * 7 6 3 18 18 N 1.32590 * 119.14026 * 5.14528 * 17 7 6 19 19 C 1.32198 * 120.99361 * 180.02562 * 18 17 7 20 20 C 1.38619 * 119.27350 * 0.02562 * 19 18 17 21 21 C 1.39694 * 118.41872 * 0.02562 * 20 19 18 22 22 C 1.43208 * 120.51726 * 180.02562 * 21 20 19 23 23 N 7.95436 * 115.19574 * 281.35781 * 2 1 3 24 24 N 1.32275 * 119.13710 * 184.87996 * 17 7 6 25 25 H 1.09000 * 109.47298 * 299.99943 * 1 2 3 26 26 H 1.08995 * 109.47263 * 59.99707 * 1 2 3 27 27 H 1.09002 * 109.47366 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46837 * 240.00303 * 2 1 3 29 29 H 1.09002 * 109.46895 * 120.00226 * 2 1 3 30 30 H 1.08991 * 109.47462 * 302.89817 * 3 2 1 31 31 H 1.09001 * 109.47046 * 305.26891 * 4 3 2 32 32 H 1.09007 * 109.46915 * 65.26037 * 4 3 2 33 33 H 1.08993 * 109.47116 * 63.87884 * 5 4 3 34 34 H 1.09003 * 109.46637 * 183.88198 * 5 4 3 35 35 H 1.09000 * 109.46667 * 303.87554 * 5 4 3 36 36 H 1.09007 * 109.46951 * 190.08638 * 6 3 2 37 37 H 1.08997 * 109.47746 * 310.08753 * 6 3 2 38 38 H 1.09003 * 109.47005 * 220.11647 * 8 7 6 39 39 H 1.09004 * 109.47408 * 340.11319 * 8 7 6 40 40 H 0.97002 * 120.00204 * 180.02562 * 12 11 9 41 41 H 1.08004 * 120.36318 * 179.97438 * 19 18 17 42 42 H 1.08005 * 120.79050 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5903 2.1424 1.2841 5 6 1.9864 3.6191 1.2256 6 6 3.5682 1.4430 -0.0728 7 7 3.9939 0.9948 -1.4010 8 6 4.3834 -0.4015 -1.6129 9 6 3.2383 -1.1525 -2.2419 10 1 2.3411 -0.6257 -2.5311 11 6 3.3362 -2.5122 -2.4481 12 7 4.4290 -3.1537 -2.0963 13 14 1.9165 -3.4433 -3.2273 14 1 0.8110 -2.4987 -3.5285 15 1 2.3763 -4.0852 -4.4849 16 1 1.4333 -4.4863 -2.2871 17 6 4.0282 1.8906 -2.4558 18 7 3.7719 3.1707 -2.2242 19 6 3.7940 4.0575 -3.2044 20 6 4.0897 3.6375 -4.4919 21 6 4.3542 2.2825 -4.7049 22 6 4.6652 1.7997 -6.0168 23 7 4.9163 1.4175 -7.0566 24 7 4.3209 1.4480 -3.6674 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6349 1.9711 -0.8628 31 1 0.5079 2.0601 1.3829 32 1 2.0702 1.6711 2.1420 33 1 1.4531 4.1062 0.4094 34 1 1.7281 4.1021 2.1680 35 1 3.0603 3.7007 1.0579 36 1 3.9401 2.4519 0.1067 37 1 3.9684 0.7683 0.6839 38 1 5.2500 -0.4408 -2.2729 39 1 4.6350 -0.8578 -0.6554 40 1 4.4981 -4.1102 -2.2417 41 1 3.5833 5.0977 -3.0043 42 1 4.1149 4.3412 -5.3109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297332940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:21 Heat of formation + Delta-G solvation = 81.710853 kcal Electronic energy + Delta-G solvation = -23444.292420 eV Core-core repulsion = 20232.002600 eV Total energy + Delta-G solvation = -3212.289820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.63252 -37.86417 -36.45350 -35.00800 -33.37348 -32.75270 -31.29285 -30.80820 -28.42185 -26.60941 -25.34776 -24.05719 -23.44967 -22.08347 -21.35578 -19.61576 -18.70181 -17.26292 -16.67492 -15.97648 -15.21970 -14.90331 -14.87101 -14.28719 -14.04183 -14.02463 -13.60886 -13.44312 -13.23911 -12.99581 -12.86240 -12.59900 -12.41754 -12.19566 -11.67897 -11.49876 -11.41787 -11.12114 -10.91529 -10.77003 -10.69169 -10.56205 -10.49326 -10.33320 -10.17528 -9.98810 -9.81599 -9.46944 -9.16833 -8.73818 -8.47088 -7.18393 -6.10198 -4.11762 0.90780 1.57279 2.63154 3.21916 3.26164 3.35125 3.36610 3.43978 3.81513 4.35547 4.41437 4.64469 5.08431 5.19609 5.21574 5.27150 5.31674 5.39913 5.42504 5.61442 5.79138 5.80324 5.85488 5.91549 6.00564 6.14403 6.18721 6.22562 6.30118 6.38812 6.44452 6.56777 6.68012 6.72468 6.90438 6.99985 7.21292 7.36066 7.49870 7.53528 7.61502 7.85062 8.10248 8.20413 8.71672 8.91049 9.48913 10.96172 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.009250 B = 0.008874 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.362357 B = 3154.641846 C = 5403.769007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.159 4.159 3 C -0.092 4.092 4 C -0.118 4.118 5 C -0.149 4.149 6 C 0.136 3.864 7 N -0.553 5.553 8 C 0.256 3.744 9 C -0.510 4.510 10 H 0.065 0.935 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.888 3.112 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.579 3.421 18 N -0.562 5.562 19 C 0.196 3.804 20 C -0.274 4.274 21 C 0.283 3.717 22 C 0.277 3.723 23 N -0.392 5.392 24 N -0.509 5.509 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.129 0.871 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.263 0.737 41 H 0.168 0.832 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 14.034 4.463 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C -0.112 4.112 4 C -0.156 4.156 5 C -0.207 4.207 6 C 0.012 3.988 7 N -0.263 5.263 8 C 0.136 3.864 9 C -0.548 4.548 10 H 0.083 0.917 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.716 3.284 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.223 3.777 18 N -0.286 5.286 19 C 0.025 3.975 20 C -0.305 4.305 21 C 0.130 3.870 22 C -0.041 4.041 23 N -0.070 5.070 24 N -0.233 5.233 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.146 0.854 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.185 0.815 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.918 12.348 3.924 13.281 hybrid contribution -0.953 -0.023 -0.775 1.228 sum -3.870 12.325 3.150 13.297 Atomic orbital electron populations 1.21757 0.97634 1.00590 1.00243 1.22325 0.94487 0.96300 1.06488 1.21493 0.95523 0.96843 0.97336 1.21584 1.00848 0.95313 0.97874 1.21803 1.01986 0.96331 1.00535 1.21577 0.94248 1.00096 0.82874 1.47056 1.64561 1.09708 1.04981 1.19442 0.96351 0.72831 0.97739 1.21270 1.01283 0.92396 1.39885 0.91746 1.24865 0.95869 0.97531 0.95491 1.69917 1.26437 1.09282 1.47319 0.86583 0.82603 0.79996 0.79210 1.19676 1.20947 1.20928 1.19150 0.87635 0.85175 0.85731 1.67956 1.22358 1.01915 1.36335 1.22778 0.88728 0.98783 0.87168 1.22182 1.12391 0.95520 1.00375 1.16318 0.94271 0.89573 0.86805 1.25015 0.94074 0.92931 0.92052 1.81178 1.06893 1.06755 1.12136 1.68055 1.19754 1.37167 0.98290 0.93861 0.93746 0.93538 0.85370 0.93108 0.91526 0.92097 0.92441 0.92980 0.93790 0.92182 0.90506 0.90736 0.94426 0.94014 0.92725 0.81526 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.63 37.16 0.36 -1.92 16 2 C -0.16 -2.80 5.26 -26.73 -0.14 -2.94 16 3 C -0.09 -1.44 2.01 -90.62 -0.18 -1.62 16 4 C -0.12 -1.49 5.24 -26.73 -0.14 -1.63 16 5 C -0.15 -1.68 9.77 37.16 0.36 -1.32 16 6 C 0.14 2.22 4.76 -4.04 -0.02 2.20 16 7 N -0.55 -10.90 2.44 -177.44 -0.43 -11.33 16 8 C 0.26 6.02 4.88 -5.20 -0.03 5.99 16 9 C -0.51 -12.99 6.54 -34.44 -0.23 -13.22 16 10 H 0.06 1.70 6.76 -52.49 -0.35 1.34 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 13 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 C 0.58 11.00 7.97 -322.94 -2.57 8.43 16 18 N -0.56 -8.81 9.19 -13.97 -0.13 -8.94 16 19 C 0.20 2.36 11.30 -17.25 -0.19 2.17 16 20 C -0.27 -3.39 9.89 -38.90 -0.38 -3.78 16 21 C 0.28 4.69 6.61 -84.81 -0.56 4.13 16 22 C 0.28 4.74 15.60 -22.47 -0.35 4.39 16 23 N -0.39 -7.13 18.54 41.84 0.78 -6.36 16 24 N -0.51 -10.28 9.15 -11.90 -0.11 -10.39 16 25 H 0.04 0.59 6.39 -51.93 -0.33 0.25 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.13 2.75 3.21 -51.93 -0.17 2.58 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.06 0.75 6.25 -51.93 -0.32 0.43 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.69 6.22 -51.93 -0.32 0.37 16 36 H 0.08 1.15 5.47 -51.92 -0.28 0.87 16 37 H 0.07 1.20 7.71 -51.93 -0.40 0.80 16 38 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 39 H 0.04 1.02 7.72 -51.93 -0.40 0.62 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -28.54 347.24 -9.05 -37.59 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.93 Total: -0.31 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -4.17 Total: 2.51 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.84 Total: -61.21 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.54 -9.05 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297332940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.298 kcal (2) G-P(sol) polarization free energy of solvation -28.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds