Wall clock time and date at job start Fri Apr 10 2020 19:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47018 * 2 1 4 4 C 1.53006 * 109.47107 * 62.89662 * 3 2 1 5 5 C 1.52999 * 109.47072 * 185.26481 * 4 3 2 6 6 C 1.52998 * 109.46780 * 182.89372 * 3 2 1 7 7 N 1.46502 * 109.47021 * 70.09154 * 6 3 2 8 8 C 1.46496 * 119.99808 * 262.58070 * 7 6 3 9 9 C 1.50698 * 109.47378 * 100.11873 * 8 7 6 10 10 H 1.07994 * 119.99876 * 4.66855 * 9 8 7 11 11 C 1.37870 * 120.00045 * 184.67456 * 9 8 7 12 12 N 1.31515 * 120.00090 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00178 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47094 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47458 * 119.99953 * 13 11 9 16 16 H 1.48500 * 109.47111 * 240.00344 * 13 11 9 17 17 C 1.38424 * 119.99978 * 82.57965 * 7 6 3 18 18 N 1.32590 * 119.14026 * 5.14528 * 17 7 6 19 19 C 1.32198 * 120.99361 * 180.02562 * 18 17 7 20 20 C 1.38619 * 119.27350 * 0.02562 * 19 18 17 21 21 C 1.39694 * 118.41872 * 0.02562 * 20 19 18 22 22 C 1.43208 * 120.51726 * 180.02562 * 21 20 19 23 23 N 7.95436 * 115.19574 * 281.35781 * 2 1 3 24 24 N 1.32275 * 119.13710 * 184.87996 * 17 7 6 25 25 H 1.09000 * 109.47298 * 299.99943 * 1 2 3 26 26 H 1.08995 * 109.47263 * 59.99707 * 1 2 3 27 27 H 1.09002 * 109.47366 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46837 * 240.00303 * 2 1 3 29 29 H 1.09002 * 109.46895 * 120.00226 * 2 1 3 30 30 H 1.08991 * 109.47462 * 302.89817 * 3 2 1 31 31 H 1.09001 * 109.47046 * 305.26891 * 4 3 2 32 32 H 1.09007 * 109.46915 * 65.26037 * 4 3 2 33 33 H 1.08993 * 109.47116 * 63.87884 * 5 4 3 34 34 H 1.09003 * 109.46637 * 183.88198 * 5 4 3 35 35 H 1.09000 * 109.46667 * 303.87554 * 5 4 3 36 36 H 1.09007 * 109.46951 * 190.08638 * 6 3 2 37 37 H 1.08997 * 109.47746 * 310.08753 * 6 3 2 38 38 H 1.09003 * 109.47005 * 220.11647 * 8 7 6 39 39 H 1.09004 * 109.47408 * 340.11319 * 8 7 6 40 40 H 0.97002 * 120.00204 * 180.02562 * 12 11 9 41 41 H 1.08004 * 120.36318 * 179.97438 * 19 18 17 42 42 H 1.08005 * 120.79050 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5903 2.1424 1.2841 5 6 1.9864 3.6191 1.2256 6 6 3.5682 1.4430 -0.0728 7 7 3.9939 0.9948 -1.4010 8 6 4.3834 -0.4015 -1.6129 9 6 3.2383 -1.1525 -2.2419 10 1 2.3411 -0.6257 -2.5311 11 6 3.3362 -2.5122 -2.4481 12 7 4.4290 -3.1537 -2.0963 13 14 1.9165 -3.4433 -3.2273 14 1 0.8110 -2.4987 -3.5285 15 1 2.3763 -4.0852 -4.4849 16 1 1.4333 -4.4863 -2.2871 17 6 4.0282 1.8906 -2.4558 18 7 3.7719 3.1707 -2.2242 19 6 3.7940 4.0575 -3.2044 20 6 4.0897 3.6375 -4.4919 21 6 4.3542 2.2825 -4.7049 22 6 4.6652 1.7997 -6.0168 23 7 4.9163 1.4175 -7.0566 24 7 4.3209 1.4480 -3.6674 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6349 1.9711 -0.8628 31 1 0.5079 2.0601 1.3829 32 1 2.0702 1.6711 2.1420 33 1 1.4531 4.1062 0.4094 34 1 1.7281 4.1021 2.1680 35 1 3.0603 3.7007 1.0579 36 1 3.9401 2.4519 0.1067 37 1 3.9684 0.7683 0.6839 38 1 5.2500 -0.4408 -2.2729 39 1 4.6350 -0.8578 -0.6554 40 1 4.4981 -4.1102 -2.2417 41 1 3.5833 5.0977 -3.0043 42 1 4.1149 4.3412 -5.3109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297332940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:20 Heat of formation + Delta-G solvation = 68.492138 kcal Electronic energy + Delta-G solvation = -23444.865627 eV Core-core repulsion = 20232.002600 eV Total energy + Delta-G solvation = -3212.863027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90034 -39.18903 -37.81258 -36.39340 -34.80459 -34.50442 -32.47197 -32.10530 -29.99396 -28.10098 -26.61371 -25.39616 -24.98258 -23.29477 -22.77734 -20.87431 -20.00565 -18.75578 -18.47066 -17.34549 -16.65889 -16.28897 -16.23778 -15.70444 -15.33898 -15.19276 -14.91468 -14.76519 -14.53210 -14.29691 -14.24266 -14.12689 -13.95284 -13.58177 -13.27251 -13.00722 -12.66857 -12.62619 -12.57790 -12.30775 -12.09257 -11.93428 -11.77289 -11.73079 -11.63292 -11.28767 -11.22460 -10.81815 -10.73491 -10.52494 -10.01086 -8.66711 -8.10348 -6.19749 -0.33831 0.43577 1.27700 1.32787 1.36699 1.45273 1.89307 2.07874 2.39041 2.51638 3.12564 3.14520 3.55054 3.82222 4.02272 4.14979 4.17008 4.27422 4.42953 4.52541 4.59203 4.62718 4.72432 4.74456 4.88048 4.95768 5.02995 5.08425 5.14220 5.25060 5.26662 5.30771 5.40635 5.45511 5.50435 5.64502 5.68177 5.73960 5.98737 6.00403 6.09690 6.19986 6.23022 6.72135 6.85763 7.38105 7.51037 8.91056 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.009250 B = 0.008874 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.362357 B = 3154.641846 C = 5403.769007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.160 4.160 3 C -0.080 4.080 4 C -0.112 4.112 5 C -0.143 4.143 6 C 0.138 3.862 7 N -0.569 5.569 8 C 0.280 3.720 9 C -0.490 4.490 10 H 0.054 0.946 11 C 0.015 3.985 12 N -0.926 5.926 13 Si 0.939 3.061 14 H -0.270 1.270 15 H -0.289 1.289 16 H -0.275 1.275 17 C 0.564 3.436 18 N -0.557 5.557 19 C 0.204 3.796 20 C -0.234 4.234 21 C 0.253 3.747 22 C 0.289 3.711 23 N -0.421 5.421 24 N -0.567 5.567 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.002 0.998 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.226 0.774 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 17.469 5.041 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C -0.100 4.100 4 C -0.150 4.150 5 C -0.200 4.200 6 C 0.016 3.984 7 N -0.281 5.281 8 C 0.158 3.842 9 C -0.529 4.529 10 H 0.072 0.928 11 C -0.183 4.183 12 N -0.567 5.567 13 Si 0.766 3.234 14 H -0.195 1.195 15 H -0.215 1.215 16 H -0.200 1.200 17 C 0.208 3.792 18 N -0.281 5.281 19 C 0.034 3.966 20 C -0.264 4.264 21 C 0.104 3.896 22 C -0.029 4.029 23 N -0.098 5.098 24 N -0.292 5.292 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.020 0.980 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.243 0.757 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.392 15.833 4.458 17.025 hybrid contribution -0.491 -0.886 -1.008 1.428 sum -4.883 14.948 3.450 16.099 Atomic orbital electron populations 1.21707 0.96062 1.00619 1.01286 1.22190 0.95949 0.97427 1.04161 1.21361 0.94741 0.95470 0.98438 1.21538 1.01235 0.96150 0.96094 1.21743 1.01700 0.95058 1.01542 1.21690 0.94820 1.00600 0.81331 1.46769 1.66439 1.08401 1.06532 1.18784 0.94379 0.75413 0.95576 1.21370 1.01077 0.92270 1.38220 0.92849 1.25508 0.97711 0.98596 0.96495 1.70012 1.28027 1.09364 1.49270 0.85788 0.80374 0.79032 0.78253 1.19480 1.21548 1.20027 1.19184 0.88635 0.86235 0.85131 1.68034 1.21725 1.00706 1.37595 1.23836 0.86300 1.00391 0.86080 1.22724 1.07717 0.93924 1.01999 1.16596 0.96095 0.91212 0.85652 1.25258 0.93218 0.92288 0.92102 1.81176 1.08110 1.07362 1.13162 1.67862 1.22053 1.39639 0.99624 0.91239 0.94158 0.94084 0.89346 0.93496 0.93015 0.91398 0.91852 0.93034 0.91947 0.92481 0.88778 0.91303 0.97999 0.95694 0.92864 0.75728 0.79486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.63 71.98 0.69 -3.55 16 2 C -0.16 -5.66 5.26 30.59 0.16 -5.50 16 3 C -0.08 -2.43 2.01 -10.79 -0.02 -2.45 16 4 C -0.11 -2.56 5.24 30.60 0.16 -2.40 16 5 C -0.14 -2.74 9.77 71.98 0.70 -2.03 16 6 C 0.14 4.49 4.76 86.38 0.41 4.90 16 7 N -0.57 -23.01 2.44 -715.28 -1.75 -24.75 16 8 C 0.28 13.94 4.88 85.63 0.42 14.36 16 9 C -0.49 -26.14 6.54 25.60 0.17 -25.97 16 10 H 0.05 2.93 6.76 -2.91 -0.02 2.91 16 11 C 0.02 0.86 5.46 84.65 0.46 1.32 16 12 N -0.93 -54.08 13.29 21.44 0.28 -53.80 16 13 Si 0.94 44.84 29.54 68.60 2.03 46.87 16 14 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 17 C 0.56 21.33 7.97 261.53 2.09 23.42 16 18 N -0.56 -16.03 9.19 -198.10 -1.82 -17.85 16 19 C 0.20 3.93 11.30 84.73 0.96 4.89 16 20 C -0.23 -4.84 9.89 22.71 0.22 -4.61 16 21 C 0.25 8.13 6.61 40.54 0.27 8.40 16 22 C 0.29 9.80 15.60 88.33 1.38 11.18 16 23 N -0.42 -15.34 18.54 19.01 0.35 -14.98 16 24 N -0.57 -23.24 9.15 -191.56 -1.75 -25.00 16 25 H 0.07 1.73 6.39 -2.39 -0.02 1.72 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 3.91 3.21 -2.39 -0.01 3.90 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 31 H 0.07 1.46 6.25 -2.39 -0.01 1.45 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.37 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.13 6.22 -2.39 -0.01 1.11 16 36 H 0.09 2.69 5.47 -2.38 -0.01 2.68 16 37 H 0.07 2.26 7.71 -2.39 -0.02 2.24 16 38 H 0.00 0.11 7.77 -2.39 -0.02 0.09 16 39 H 0.03 1.31 7.72 -2.39 -0.02 1.29 16 40 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.23 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -66.90 347.24 6.43 -60.46 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.03 Total: 7.11 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 8.07 Total: 21.94 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -4.69 Total: -136.38 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.90 6.43 -60.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297332940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.953 kcal (2) G-P(sol) polarization free energy of solvation -66.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds