Wall clock time and date at job start Fri Apr 10 2020 19:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38288 * 119.92341 * 2 1 4 4 C 1.38101 * 120.07542 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.92572 * 0.02562 * 4 3 2 6 6 N 1.39667 * 120.07476 * 179.97438 * 5 4 3 7 7 C 1.46967 * 110.99881 * 179.97438 * 6 5 4 8 8 C 1.53051 * 109.36218 * 183.18895 * 7 6 5 9 9 N 1.46960 * 109.36551 * 301.59545 * 8 7 6 10 10 C 1.46901 * 110.99709 * 183.19039 * 9 8 7 11 11 H 1.09008 * 109.46800 * 188.52726 * 10 9 8 12 12 C 1.52991 * 109.47298 * 308.52702 * 10 9 8 13 13 C 1.53002 * 109.47184 * 68.53483 * 10 9 8 14 14 C 1.50695 * 109.47279 * 63.71024 * 13 10 9 15 15 H 1.07998 * 120.00337 * 5.07530 * 14 13 10 16 16 C 1.37880 * 120.00008 * 185.07515 * 14 13 10 17 17 N 1.31516 * 119.99932 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99922 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46849 * 90.00511 * 18 16 14 20 20 H 1.48504 * 109.47193 * 210.00163 * 18 16 14 21 21 H 1.48497 * 109.47402 * 330.00194 * 18 16 14 22 22 C 1.46955 * 110.87537 * 59.32254 * 9 8 7 23 23 C 1.46950 * 111.00148 * 303.79660 * 6 5 4 24 24 C 1.38918 * 119.84647 * 0.24817 * 5 4 3 25 25 C 1.38104 * 119.92726 * 359.49862 * 24 5 4 26 26 H 1.09006 * 109.46808 * 89.99921 * 1 2 3 27 27 H 1.09004 * 109.47221 * 209.99729 * 1 2 3 28 28 H 1.09002 * 109.47550 * 330.00533 * 1 2 3 29 29 H 1.07998 * 119.96162 * 0.02562 * 3 2 1 30 30 H 1.07998 * 120.03782 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.48984 * 63.21937 * 7 6 5 32 32 H 1.09003 * 109.50279 * 303.16625 * 7 6 5 33 33 H 1.09007 * 109.48707 * 181.63129 * 8 7 6 34 34 H 1.08996 * 109.50789 * 61.57646 * 8 7 6 35 35 H 1.08997 * 109.47352 * 300.00350 * 12 10 9 36 36 H 1.09000 * 109.47358 * 180.02562 * 12 10 9 37 37 H 1.09008 * 109.47175 * 60.00254 * 12 10 9 38 38 H 1.09001 * 109.46823 * 183.71229 * 13 10 9 39 39 H 1.09006 * 109.46591 * 303.71277 * 13 10 9 40 40 H 0.96994 * 119.99630 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.49006 * 60.64919 * 22 9 8 42 42 H 1.08999 * 109.48653 * 180.70946 * 22 9 8 43 43 H 1.09004 * 109.49384 * 296.78224 * 23 6 5 44 44 H 1.08994 * 109.48938 * 56.84743 * 23 6 5 45 45 H 1.08002 * 120.03151 * 179.72455 * 24 5 4 46 46 H 1.07997 * 119.96174 * 180.25443 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2740 0.0001 0.0005 6 7 5.6707 0.0002 0.0005 7 6 6.1974 -1.3719 0.0011 8 6 7.7252 -1.3288 0.0815 9 7 8.2519 -0.5661 -1.0590 10 6 9.7209 -0.5661 -1.0590 11 1 10.0842 0.1255 -1.8191 12 6 10.2308 -0.1276 0.3152 13 6 10.2309 -1.9755 -1.3664 14 6 9.8052 -2.3717 -2.7566 15 1 9.3001 -1.6581 -3.3907 16 6 10.0605 -3.6453 -3.2191 17 7 10.6751 -4.5144 -2.4468 18 14 9.5321 -4.1366 -4.9421 19 1 10.6269 -3.8373 -5.8998 20 1 9.2319 -5.5906 -4.9721 21 1 8.3175 -3.3724 -5.3242 22 6 7.7251 0.8058 -1.0596 23 6 6.1973 0.7633 -1.1395 24 6 3.5779 -1.2020 -0.0052 25 6 2.1968 -1.1985 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6550 2.1327 0.0004 30 1 4.1160 2.1386 0.0010 31 1 5.8955 -1.8777 -0.9159 32 1 5.8031 -1.9127 0.8615 33 1 8.1196 -2.3446 0.0528 34 1 8.0274 -0.8475 1.0115 35 1 9.8675 0.8765 0.5341 36 1 11.3208 -0.1271 0.3151 37 1 9.8675 -0.8192 1.0753 38 1 11.3189 -1.9903 -1.3015 39 1 9.8142 -2.6781 -0.6447 40 1 10.8543 -5.4105 -2.7721 41 1 8.0270 1.3116 -0.1425 42 1 8.1194 1.3463 -1.9201 43 1 5.8954 0.2822 -2.0699 44 1 5.8030 1.7790 -1.1105 45 1 4.1161 -2.1383 -0.0097 46 1 1.6551 -2.1327 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298995705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:32 Heat of formation + Delta-G solvation = 35.320733 kcal Electronic energy + Delta-G solvation = -23254.920076 eV Core-core repulsion = 20144.158972 eV Total energy + Delta-G solvation = -3110.761104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.31562 -38.51838 -36.20685 -33.07112 -31.96190 -31.51973 -30.35653 -30.13929 -27.34171 -26.78442 -24.66204 -24.14288 -23.03895 -21.81638 -21.13010 -19.96754 -18.61982 -17.35665 -16.18088 -15.66288 -15.39174 -15.11021 -14.61916 -14.55933 -14.21719 -13.96689 -13.91166 -13.73563 -13.52131 -13.40968 -12.92510 -12.32970 -12.25799 -12.08662 -11.76892 -11.71009 -11.50677 -11.41751 -11.21240 -11.15268 -10.91627 -10.62240 -10.55136 -10.44426 -10.28326 -9.94550 -9.46707 -9.16989 -8.97993 -8.93514 -8.26562 -7.66059 -7.48434 -5.89323 -3.86846 1.37203 1.41110 3.38039 3.44440 3.49344 3.63485 3.99363 4.48766 4.56332 4.77037 4.85770 4.99065 5.08459 5.15900 5.32918 5.40055 5.44624 5.46467 5.48358 5.56714 5.59923 5.66266 5.72841 5.75554 5.77766 5.89530 5.93921 5.95934 6.02349 6.06050 6.16030 6.29473 6.33654 6.37273 6.42177 6.55857 6.60880 6.68630 6.82165 6.98228 7.12844 7.37977 7.52482 7.65208 7.88002 8.00345 8.11587 8.57223 9.18328 9.74578 11.22647 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.004036 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.282264 B = 6935.155004 C = 7865.930955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 C -0.097 4.097 4 C -0.141 4.141 5 C 0.117 3.883 6 N -0.492 5.492 7 C 0.054 3.946 8 C 0.057 3.943 9 N -0.510 5.510 10 C 0.087 3.913 11 H 0.068 0.932 12 C -0.183 4.183 13 C 0.030 3.970 14 C -0.488 4.488 15 H 0.058 0.942 16 C 0.051 3.949 17 N -0.904 5.904 18 Si 0.888 3.112 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.275 1.275 22 C 0.052 3.948 23 C 0.065 3.935 24 C -0.167 4.167 25 C -0.093 4.093 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.036 0.964 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.022 0.978 40 H 0.257 0.743 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.129 0.871 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.564 10.689 6.553 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.161 4.161 5 C 0.019 3.981 6 N -0.207 5.207 7 C -0.073 4.073 8 C -0.071 4.071 9 N -0.234 5.234 10 C -0.020 4.020 11 H 0.087 0.913 12 C -0.242 4.242 13 C -0.007 4.007 14 C -0.526 4.526 15 H 0.076 0.924 16 C -0.148 4.148 17 N -0.545 5.545 18 Si 0.717 3.283 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.200 1.200 22 C -0.077 4.077 23 C -0.061 4.061 24 C -0.188 4.188 25 C -0.112 4.112 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.040 0.960 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.147 0.853 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.397 10.513 6.524 19.752 hybrid contribution -0.162 -0.362 -0.767 0.863 sum -15.559 10.151 5.757 19.449 Atomic orbital electron populations 1.20707 0.91573 1.02301 1.01895 1.19786 0.95813 0.93215 1.03648 1.20830 0.93636 0.97324 0.99821 1.20752 0.93904 0.96790 1.04687 1.19047 0.88570 0.93567 0.96951 1.59263 1.04150 1.15959 1.41297 1.22402 0.95944 0.87354 1.01552 1.22181 0.92263 1.00511 0.92142 1.62303 1.08716 1.10785 1.41617 1.21904 0.84911 1.01462 0.93748 0.91347 1.22511 1.01520 0.99861 1.00314 1.19187 0.95402 0.88764 0.97326 1.21131 1.35714 0.96897 0.98893 0.92358 1.24989 0.95808 0.96850 0.97194 1.69959 1.43015 1.05302 1.36207 0.86655 0.78902 0.77441 0.85336 1.21006 1.21561 1.19987 1.22173 0.93032 0.91894 1.00556 1.22282 0.95482 0.97508 0.90810 1.21390 0.94616 0.97731 1.05067 1.20871 0.93736 0.97380 0.99232 0.91669 0.91913 0.91954 0.86293 0.85995 0.92444 0.90308 0.88759 0.94617 0.94145 0.92571 0.92716 0.96658 0.95967 0.93331 0.94694 0.90443 0.92930 0.90470 0.85329 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.12 -1.34 5.88 -104.59 -0.62 -1.96 16 3 C -0.10 -1.07 9.69 -39.61 -0.38 -1.45 16 4 C -0.14 -1.73 9.19 -39.38 -0.36 -2.09 16 5 C 0.12 1.62 5.64 -83.79 -0.47 1.14 16 6 N -0.49 -7.22 4.75 -170.95 -0.81 -8.04 16 7 C 0.05 0.85 4.29 -3.76 -0.02 0.83 16 8 C 0.06 1.01 4.70 -3.77 -0.02 0.99 16 9 N -0.51 -9.57 4.32 -226.49 -0.98 -10.54 16 10 C 0.09 1.75 2.26 -67.72 -0.15 1.60 16 11 H 0.07 1.39 7.98 -51.92 -0.41 0.97 16 12 C -0.18 -3.13 8.39 37.15 0.31 -2.82 16 13 C 0.03 0.76 4.40 -27.88 -0.12 0.63 16 14 C -0.49 -13.51 8.80 -34.44 -0.30 -13.82 16 15 H 0.06 1.62 7.75 -52.49 -0.41 1.21 16 16 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 17 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.05 0.81 5.36 -3.77 -0.02 0.79 16 23 C 0.06 0.93 5.38 -3.77 -0.02 0.91 16 24 C -0.17 -2.21 8.82 -39.38 -0.35 -2.56 16 25 C -0.09 -1.09 9.69 -39.61 -0.38 -1.48 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.35 7.19 -52.49 -0.38 0.97 16 31 H 0.06 0.97 7.57 -51.93 -0.39 0.58 16 32 H 0.08 1.11 7.19 -51.93 -0.37 0.74 16 33 H 0.09 1.87 6.37 -51.92 -0.33 1.54 16 34 H 0.04 0.61 6.40 -51.93 -0.33 0.27 16 35 H 0.04 0.62 6.85 -51.93 -0.36 0.27 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.94 6.39 -51.92 -0.33 0.61 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.59 6.42 -51.93 -0.33 0.25 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.03 0.53 6.85 -51.93 -0.36 0.18 16 42 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.94 6.82 -51.93 -0.35 0.59 16 45 H 0.13 1.66 5.81 -52.49 -0.31 1.35 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -30.04 351.97 -11.01 -41.05 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.59 Total: -0.02 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -2.64 Total: -18.42 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -1.06 Total: -44.88 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.04 -11.01 -41.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298995705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.370 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds