Wall clock time and date at job start Fri Apr 10 2020 19:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38288 * 119.92341 * 2 1 4 4 C 1.38101 * 120.07542 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.92572 * 0.02562 * 4 3 2 6 6 N 1.39667 * 120.07476 * 179.97438 * 5 4 3 7 7 C 1.46967 * 110.99881 * 179.97438 * 6 5 4 8 8 C 1.53051 * 109.36218 * 183.18895 * 7 6 5 9 9 N 1.46960 * 109.36551 * 301.59545 * 8 7 6 10 10 C 1.46901 * 110.99709 * 183.19039 * 9 8 7 11 11 H 1.09008 * 109.46800 * 188.52726 * 10 9 8 12 12 C 1.52991 * 109.47298 * 308.52702 * 10 9 8 13 13 C 1.53002 * 109.47184 * 68.53483 * 10 9 8 14 14 C 1.50695 * 109.47279 * 63.71024 * 13 10 9 15 15 H 1.07998 * 120.00337 * 5.07530 * 14 13 10 16 16 C 1.37880 * 120.00008 * 185.07515 * 14 13 10 17 17 N 1.31516 * 119.99932 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99922 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46849 * 90.00511 * 18 16 14 20 20 H 1.48504 * 109.47193 * 210.00163 * 18 16 14 21 21 H 1.48497 * 109.47402 * 330.00194 * 18 16 14 22 22 C 1.46955 * 110.87537 * 59.32254 * 9 8 7 23 23 C 1.46950 * 111.00148 * 303.79660 * 6 5 4 24 24 C 1.38918 * 119.84647 * 0.24817 * 5 4 3 25 25 C 1.38104 * 119.92726 * 359.49862 * 24 5 4 26 26 H 1.09006 * 109.46808 * 89.99921 * 1 2 3 27 27 H 1.09004 * 109.47221 * 209.99729 * 1 2 3 28 28 H 1.09002 * 109.47550 * 330.00533 * 1 2 3 29 29 H 1.07998 * 119.96162 * 0.02562 * 3 2 1 30 30 H 1.07998 * 120.03782 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.48984 * 63.21937 * 7 6 5 32 32 H 1.09003 * 109.50279 * 303.16625 * 7 6 5 33 33 H 1.09007 * 109.48707 * 181.63129 * 8 7 6 34 34 H 1.08996 * 109.50789 * 61.57646 * 8 7 6 35 35 H 1.08997 * 109.47352 * 300.00350 * 12 10 9 36 36 H 1.09000 * 109.47358 * 180.02562 * 12 10 9 37 37 H 1.09008 * 109.47175 * 60.00254 * 12 10 9 38 38 H 1.09001 * 109.46823 * 183.71229 * 13 10 9 39 39 H 1.09006 * 109.46591 * 303.71277 * 13 10 9 40 40 H 0.96994 * 119.99630 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.49006 * 60.64919 * 22 9 8 42 42 H 1.08999 * 109.48653 * 180.70946 * 22 9 8 43 43 H 1.09004 * 109.49384 * 296.78224 * 23 6 5 44 44 H 1.08994 * 109.48938 * 56.84743 * 23 6 5 45 45 H 1.08002 * 120.03151 * 179.72455 * 24 5 4 46 46 H 1.07997 * 119.96174 * 180.25443 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2740 0.0001 0.0005 6 7 5.6707 0.0002 0.0005 7 6 6.1974 -1.3719 0.0011 8 6 7.7252 -1.3288 0.0815 9 7 8.2519 -0.5661 -1.0590 10 6 9.7209 -0.5661 -1.0590 11 1 10.0842 0.1255 -1.8191 12 6 10.2308 -0.1276 0.3152 13 6 10.2309 -1.9755 -1.3664 14 6 9.8052 -2.3717 -2.7566 15 1 9.3001 -1.6581 -3.3907 16 6 10.0605 -3.6453 -3.2191 17 7 10.6751 -4.5144 -2.4468 18 14 9.5321 -4.1366 -4.9421 19 1 10.6269 -3.8373 -5.8998 20 1 9.2319 -5.5906 -4.9721 21 1 8.3175 -3.3724 -5.3242 22 6 7.7251 0.8058 -1.0596 23 6 6.1973 0.7633 -1.1395 24 6 3.5779 -1.2020 -0.0052 25 6 2.1968 -1.1985 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6550 2.1327 0.0004 30 1 4.1160 2.1386 0.0010 31 1 5.8955 -1.8777 -0.9159 32 1 5.8031 -1.9127 0.8615 33 1 8.1196 -2.3446 0.0528 34 1 8.0274 -0.8475 1.0115 35 1 9.8675 0.8765 0.5341 36 1 11.3208 -0.1271 0.3151 37 1 9.8675 -0.8192 1.0753 38 1 11.3189 -1.9903 -1.3015 39 1 9.8142 -2.6781 -0.6447 40 1 10.8543 -5.4105 -2.7721 41 1 8.0270 1.3116 -0.1425 42 1 8.1194 1.3463 -1.9201 43 1 5.8954 0.2822 -2.0699 44 1 5.8030 1.7790 -1.1105 45 1 4.1161 -2.1383 -0.0097 46 1 1.6551 -2.1327 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298995705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:30 Heat of formation + Delta-G solvation = 18.144038 kcal Electronic energy + Delta-G solvation = -23255.664913 eV Core-core repulsion = 20144.158972 eV Total energy + Delta-G solvation = -3111.505941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41267 -39.71692 -37.46184 -34.95713 -33.33099 -32.59738 -31.53515 -31.33430 -29.21429 -27.86388 -25.79243 -25.35214 -24.91513 -22.84163 -22.28148 -21.26568 -20.03862 -18.44990 -18.35045 -16.80534 -16.64764 -16.45025 -16.15892 -15.84075 -15.56343 -15.22440 -15.02672 -14.70816 -14.57313 -14.43124 -14.33087 -13.86665 -13.69834 -13.28722 -13.10195 -13.02637 -12.80130 -12.67248 -12.58201 -12.45241 -12.41721 -12.21659 -12.05093 -11.98671 -11.65888 -11.54161 -11.10318 -10.97226 -10.50004 -10.47091 -9.84120 -8.94066 -8.67009 -8.09891 -6.13999 0.44801 0.50599 1.40376 1.41181 1.52280 2.46678 2.63673 2.96614 3.06909 3.26864 3.81654 3.90887 4.04534 4.08485 4.12702 4.18364 4.27702 4.33674 4.37181 4.42799 4.52720 4.55462 4.57645 4.58713 4.72855 4.76451 4.86565 4.89860 4.91646 4.92814 5.01929 5.05008 5.14902 5.19984 5.22817 5.29669 5.36952 5.46337 5.49676 5.69119 5.75543 5.89300 5.90893 6.01792 6.28753 6.38280 6.40470 6.52119 6.99213 7.51289 9.02136 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.004036 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.282264 B = 6935.155004 C = 7865.930955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.123 4.123 3 C -0.100 4.100 4 C -0.144 4.144 5 C 0.092 3.908 6 N -0.490 5.490 7 C 0.065 3.935 8 C 0.065 3.935 9 N -0.533 5.533 10 C 0.096 3.904 11 H 0.067 0.933 12 C -0.172 4.172 13 C 0.036 3.964 14 C -0.495 4.495 15 H 0.055 0.945 16 C -0.004 4.004 17 N -0.939 5.939 18 Si 0.953 3.047 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.270 1.270 22 C 0.056 3.944 23 C 0.069 3.931 24 C -0.183 4.183 25 C -0.104 4.104 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.050 0.950 38 H -0.009 1.009 39 H -0.002 1.002 40 H 0.258 0.742 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.033 0.967 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.784 12.670 6.423 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.164 4.164 5 C -0.006 4.006 6 N -0.206 5.206 7 C -0.062 4.062 8 C -0.063 4.063 9 N -0.257 5.257 10 C -0.012 4.012 11 H 0.085 0.915 12 C -0.231 4.231 13 C -0.001 4.001 14 C -0.534 4.534 15 H 0.073 0.927 16 C -0.200 4.200 17 N -0.582 5.582 18 Si 0.780 3.220 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.195 1.195 22 C -0.072 4.072 23 C -0.056 4.056 24 C -0.204 4.204 25 C -0.122 4.122 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.164 0.836 30 H 0.152 0.848 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.009 0.991 39 H 0.017 0.983 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.051 0.949 44 H 0.123 0.877 45 H 0.139 0.861 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.635 12.513 6.395 22.549 hybrid contribution 0.446 -0.966 -0.711 1.279 sum -17.189 11.547 5.684 21.473 Atomic orbital electron populations 1.20765 0.89372 1.03476 1.02759 1.20195 0.97504 0.92820 1.01902 1.21188 0.93288 0.98559 0.98786 1.20962 0.94658 0.96575 1.04228 1.19189 0.88038 0.94515 0.98837 1.59328 1.05065 1.14806 1.41399 1.22214 0.94494 0.88455 1.01037 1.22030 0.93462 0.98635 0.92219 1.62177 1.07856 1.13165 1.42493 1.21604 0.86126 0.97987 0.95470 0.91464 1.22366 1.01627 1.00942 0.98154 1.19044 0.93741 0.91642 0.95673 1.21439 1.35049 0.96912 0.99985 0.92688 1.25806 0.95995 0.97026 1.01140 1.70086 1.44340 1.05646 1.38096 0.85621 0.78707 0.77019 0.80698 1.20076 1.21293 1.19477 1.22218 0.93779 0.89896 1.01356 1.22277 0.94608 0.98724 0.90014 1.21478 0.95560 0.97464 1.05922 1.21126 0.93249 0.98718 0.99155 0.90830 0.91132 0.90491 0.83612 0.84773 0.94524 0.89190 0.92051 0.93752 0.91682 0.92310 0.93126 0.99090 0.98334 0.93313 0.93626 0.89701 0.94853 0.87735 0.86115 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.12 -2.37 5.88 -19.84 -0.12 -2.48 16 3 C -0.10 -1.89 9.69 22.25 0.22 -1.68 16 4 C -0.14 -3.21 9.19 22.40 0.21 -3.01 16 5 C 0.09 2.44 5.64 38.22 0.22 2.66 16 6 N -0.49 -14.02 4.75 -694.78 -3.30 -17.32 16 7 C 0.07 2.08 4.29 86.31 0.37 2.45 16 8 C 0.06 2.33 4.70 86.31 0.41 2.74 16 9 N -0.53 -20.07 4.32 -870.47 -3.76 -23.83 16 10 C 0.10 3.88 2.26 44.91 0.10 3.99 16 11 H 0.07 2.71 7.98 -2.38 -0.02 2.69 16 12 C -0.17 -5.76 8.39 71.98 0.60 -5.16 16 13 C 0.04 1.88 4.40 29.85 0.13 2.01 16 14 C -0.50 -28.13 8.80 25.60 0.23 -27.91 16 15 H 0.05 3.10 7.75 -2.91 -0.02 3.08 16 16 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 17 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 18 Si 0.95 45.78 29.54 68.60 2.03 47.80 16 19 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 22 C 0.06 1.65 5.36 86.31 0.46 2.12 16 23 C 0.07 1.90 5.38 86.31 0.46 2.36 16 24 C -0.18 -4.79 8.82 22.40 0.20 -4.59 16 25 C -0.10 -2.29 9.69 22.25 0.22 -2.07 16 26 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 28 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 29 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.13 2.58 7.19 -2.91 -0.02 2.56 16 31 H 0.04 1.30 7.57 -2.39 -0.02 1.28 16 32 H 0.09 2.60 7.19 -2.39 -0.02 2.59 16 33 H 0.06 2.59 6.37 -2.38 -0.02 2.57 16 34 H 0.04 1.51 6.40 -2.39 -0.02 1.49 16 35 H 0.06 1.86 6.85 -2.39 -0.02 1.85 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.72 6.39 -2.38 -0.02 1.71 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.00 -0.09 6.42 -2.38 -0.02 -0.11 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.05 1.28 6.85 -2.39 -0.02 1.26 16 42 H 0.08 2.39 8.05 -2.39 -0.02 2.37 16 43 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.10 2.28 6.82 -2.39 -0.02 2.27 16 45 H 0.12 3.21 5.81 -2.91 -0.02 3.20 16 46 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -65.58 351.97 1.06 -64.52 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.94 Total: 15.31 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 4.87 Total: -29.00 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -6.78 Total: -98.63 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -65.58 1.06 -64.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298995705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.660 kcal (2) G-P(sol) polarization free energy of solvation -65.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds