Wall clock time and date at job start Fri Apr 10 2020 19:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31578 * 118.99707 * 2 1 4 4 C 1.33425 * 120.89610 * 180.02562 * 3 2 1 5 5 C 1.43200 * 120.51798 * 179.97438 * 4 3 2 6 6 N 4.70601 * 132.86535 * 359.97438 * 2 1 3 7 7 C 1.39292 * 118.95673 * 359.97438 * 4 3 2 8 8 C 1.39655 * 118.19037 * 359.97438 * 7 4 3 9 9 N 1.38550 * 120.50024 * 179.97438 * 8 7 4 10 10 C 1.46502 * 119.99595 * 346.45101 * 9 8 7 11 11 C 1.50702 * 109.46672 * 265.65470 * 10 9 8 12 12 H 1.08002 * 119.99608 * 244.78402 * 11 10 9 13 13 C 1.37873 * 120.00086 * 64.79214 * 11 10 9 14 14 N 1.31513 * 120.00180 * 12.32213 * 13 11 10 15 15 Si 1.86804 * 119.99790 * 192.32917 * 13 11 10 16 16 H 1.48497 * 109.47159 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47174 * 119.99880 * 15 13 11 18 18 H 1.48499 * 109.46733 * 239.99423 * 15 13 11 19 19 C 1.46504 * 119.99744 * 166.44964 * 9 8 7 20 20 C 1.53000 * 109.46825 * 269.99870 * 19 9 8 21 21 C 1.53006 * 109.46673 * 180.02562 * 20 19 9 22 22 C 1.52997 * 109.47095 * 65.00444 * 21 20 19 23 23 C 1.52998 * 109.46919 * 185.00161 * 21 20 19 24 24 N 1.31830 * 118.98992 * 180.27080 * 2 1 3 25 25 H 1.09005 * 109.46911 * 90.00224 * 1 2 3 26 26 H 1.08994 * 109.47806 * 210.00126 * 1 2 3 27 27 H 1.08998 * 109.47123 * 330.00676 * 1 2 3 28 28 H 1.07997 * 120.90496 * 180.02562 * 7 4 3 29 29 H 1.09002 * 109.46501 * 145.65849 * 10 9 8 30 30 H 1.08991 * 109.47366 * 25.66045 * 10 9 8 31 31 H 0.97001 * 120.00093 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.47235 * 30.00158 * 19 9 8 33 33 H 1.08998 * 109.46477 * 150.00245 * 19 9 8 34 34 H 1.09001 * 109.47449 * 300.00157 * 20 19 9 35 35 H 1.09004 * 109.46902 * 60.00703 * 20 19 9 36 36 H 1.08999 * 109.46936 * 304.99919 * 21 20 19 37 37 H 1.08996 * 109.47350 * 59.99495 * 22 21 20 38 38 H 1.08995 * 109.47224 * 180.02562 * 22 21 20 39 39 H 1.09011 * 109.47011 * 299.99725 * 22 21 20 40 40 H 1.08994 * 109.47260 * 59.99798 * 23 21 20 41 41 H 1.08991 * 109.47182 * 180.02562 * 23 21 20 42 42 H 1.09004 * 109.47123 * 300.00377 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1448 1.1508 0.0000 4 6 3.4784 1.1951 -0.0005 5 6 4.1643 2.4521 -0.0011 6 7 4.7084 3.4493 -0.0015 7 6 4.1928 -0.0007 -0.0005 8 6 3.4744 -1.1984 0.0006 9 7 4.1365 -2.4154 0.0001 10 6 5.5697 -2.4695 -0.2988 11 6 5.7665 -2.7538 -1.7656 12 1 6.2344 -3.6754 -2.0789 13 6 5.3493 -1.8374 -2.7075 14 7 5.0060 -0.6233 -2.3367 15 14 5.2717 -2.3206 -4.5103 16 1 5.7072 -3.7320 -4.6637 17 1 3.8779 -2.1759 -5.0019 18 1 6.1687 -1.4377 -5.2983 19 6 3.4033 -3.6482 0.2985 20 6 3.4467 -3.9155 1.8044 21 6 2.6815 -5.2033 2.1159 22 6 3.3998 -6.3915 1.4731 23 6 2.6179 -5.4049 3.6312 24 7 2.1459 -1.1531 -0.0055 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 5.2727 -0.0016 -0.0005 29 1 6.0340 -3.2605 0.2902 30 1 6.0292 -1.5132 -0.0491 31 1 4.7121 0.0213 -2.9993 32 1 2.3670 -3.5413 -0.0219 33 1 3.8635 -4.4819 -0.2319 34 1 4.4830 -4.0225 2.1248 35 1 2.9865 -3.0817 2.3347 36 1 1.6700 -5.1307 1.7163 37 1 4.4113 -6.4641 1.8727 38 1 2.8545 -7.3089 1.6947 39 1 3.4451 -6.2479 0.3935 40 1 2.1063 -4.5584 4.0892 41 1 2.0733 -6.3225 3.8532 42 1 3.6295 -5.4774 4.0309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882116355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:07 Heat of formation + Delta-G solvation = 69.679203 kcal Electronic energy + Delta-G solvation = -23254.796390 eV Core-core repulsion = 20041.984838 eV Total energy + Delta-G solvation = -3212.811552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.16277 -37.40946 -36.10831 -35.56517 -33.04412 -32.43487 -31.51968 -29.22367 -27.74542 -27.11365 -26.81946 -24.60980 -23.38600 -22.43929 -20.47549 -19.72465 -18.27260 -16.95040 -16.49999 -15.56862 -15.12115 -14.75423 -14.63160 -14.36385 -14.13582 -13.71403 -13.41039 -13.16647 -13.04558 -12.78190 -12.48687 -12.46605 -12.24411 -12.14581 -11.95744 -11.87365 -11.75162 -11.55234 -11.19863 -11.06633 -10.85699 -10.74128 -10.48365 -10.20993 -10.15212 -9.88661 -9.80823 -9.69071 -8.85482 -8.68738 -8.45066 -6.72718 -6.34959 -4.45948 1.46715 2.18048 3.06961 3.12307 3.24066 3.24989 3.61444 3.80281 4.18730 4.22588 4.77045 4.88983 5.00734 5.05801 5.11950 5.13364 5.44233 5.62689 5.68807 5.81784 5.84681 5.88147 5.97073 5.98786 6.00032 6.02186 6.07333 6.13601 6.22831 6.31416 6.35810 6.40311 6.51085 6.56334 6.61722 6.73996 7.01628 7.11692 7.52559 7.67838 7.88691 7.91283 8.26788 8.39228 8.61728 9.11536 9.24230 10.62942 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.010366 B = 0.007168 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.460464 B = 3905.360420 C = 5497.933374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.337 3.663 3 N -0.554 5.554 4 C 0.205 3.795 5 C 0.296 3.704 6 N -0.425 5.425 7 C -0.121 4.121 8 C 0.468 3.532 9 N -0.566 5.566 10 C 0.232 3.768 11 C -0.539 4.539 12 H 0.063 0.937 13 C 0.081 3.919 14 N -0.865 5.865 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.125 3.875 20 C -0.126 4.126 21 C -0.093 4.093 22 C -0.149 4.149 23 C -0.144 4.144 24 N -0.582 5.582 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.267 0.733 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.752 -7.111 7.625 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.066 3.934 3 N -0.278 5.278 4 C 0.067 3.933 5 C -0.021 4.021 6 N -0.103 5.103 7 C -0.153 4.153 8 C 0.221 3.779 9 N -0.276 5.276 10 C 0.114 3.886 11 C -0.578 4.578 12 H 0.081 0.919 13 C -0.125 4.125 14 N -0.500 5.500 15 Si 0.721 3.279 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.001 3.999 20 C -0.165 4.165 21 C -0.112 4.112 22 C -0.206 4.206 23 C -0.202 4.202 24 N -0.310 5.310 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.168 0.832 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.744 -5.564 7.526 10.982 hybrid contribution 0.635 -0.569 -1.398 1.638 sum -5.109 -6.133 6.128 10.063 Atomic orbital electron populations 1.20370 0.86904 1.02954 1.02949 1.22320 0.96743 0.82474 0.91833 1.67870 1.07416 1.30678 1.21812 1.15992 0.89132 0.86533 1.01687 1.25026 0.92372 0.91733 0.92978 1.81109 1.09644 1.10515 1.09038 1.21989 1.02425 0.90457 1.00465 1.18335 0.87063 0.87043 0.85487 1.47832 1.10283 1.01415 1.68070 1.19441 0.76029 0.97867 0.95264 1.21516 1.40092 1.04898 0.91284 0.91908 1.25005 0.93705 0.94237 0.99542 1.69720 1.42575 1.03405 1.34286 0.86511 0.77992 0.78916 0.84484 1.19551 1.20763 1.20807 1.21305 0.97828 0.87233 0.93505 1.22042 1.00087 0.96546 0.97866 1.21041 0.99725 0.95073 0.95365 1.21894 1.00187 0.97230 1.01281 1.21822 1.01443 1.01024 0.95902 1.67661 1.08566 1.30313 1.24475 0.90654 0.90416 0.90510 0.83189 0.94737 0.93435 0.92201 0.90610 0.90988 0.92282 0.92338 0.91218 0.92848 0.93319 0.92079 0.92925 0.93138 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.31 36.01 0.37 -0.65 16 2 C 0.34 6.37 7.64 -157.35 -1.20 5.17 16 3 N -0.55 -11.16 10.27 -8.79 -0.09 -11.25 16 4 C 0.20 4.22 6.61 -84.86 -0.56 3.66 16 5 C 0.30 6.02 15.59 -22.47 -0.35 5.67 16 6 N -0.43 -8.80 18.54 41.84 0.78 -8.03 16 7 C -0.12 -2.55 6.41 -38.66 -0.25 -2.80 16 8 C 0.47 9.83 6.48 -154.81 -1.00 8.82 16 9 N -0.57 -11.36 2.50 -175.03 -0.44 -11.79 16 10 C 0.23 4.91 5.53 -5.19 -0.03 4.88 16 11 C -0.54 -12.85 9.40 -34.44 -0.32 -13.18 16 12 H 0.06 1.50 7.85 -52.49 -0.41 1.09 16 13 C 0.08 1.99 5.34 -17.82 -0.10 1.89 16 14 N -0.86 -21.68 9.05 55.43 0.50 -21.18 16 15 Si 0.89 19.95 29.56 -169.99 -5.02 14.92 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 C 0.13 2.13 5.32 -4.04 -0.02 2.11 16 20 C -0.13 -1.79 5.01 -26.73 -0.13 -1.92 16 21 C -0.09 -1.09 2.92 -90.62 -0.26 -1.35 16 22 C -0.15 -1.65 8.95 37.16 0.33 -1.31 16 23 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 24 N -0.58 -11.73 9.12 -10.00 -0.09 -11.82 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.15 3.27 5.68 -52.49 -0.30 2.97 16 29 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.05 1.05 5.66 -51.93 -0.29 0.75 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.08 1.35 7.26 -51.93 -0.38 0.97 16 33 H 0.07 1.23 6.49 -51.93 -0.34 0.89 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.72 6.57 -51.92 -0.34 0.38 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -25.91 350.53 -8.53 -34.45 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.26 Total: -0.43 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -3.19 Total: 9.85 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: 0.66 Total: -64.07 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -25.91 -8.53 -34.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882116355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.128 kcal (2) G-P(sol) polarization free energy of solvation -25.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds