Wall clock time and date at job start Fri Apr 10 2020 19:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31578 * 118.99707 * 2 1 4 4 C 1.33425 * 120.89610 * 180.02562 * 3 2 1 5 5 C 1.43200 * 120.51798 * 179.97438 * 4 3 2 6 6 N 4.70601 * 132.86535 * 359.97438 * 2 1 3 7 7 C 1.39292 * 118.95673 * 359.97438 * 4 3 2 8 8 C 1.39655 * 118.19037 * 359.97438 * 7 4 3 9 9 N 1.38550 * 120.50024 * 179.97438 * 8 7 4 10 10 C 1.46502 * 119.99595 * 346.45101 * 9 8 7 11 11 C 1.50702 * 109.46672 * 265.65470 * 10 9 8 12 12 H 1.08002 * 119.99608 * 244.78402 * 11 10 9 13 13 C 1.37873 * 120.00086 * 64.79214 * 11 10 9 14 14 N 1.31513 * 120.00180 * 12.32213 * 13 11 10 15 15 Si 1.86804 * 119.99790 * 192.32917 * 13 11 10 16 16 H 1.48497 * 109.47159 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47174 * 119.99880 * 15 13 11 18 18 H 1.48499 * 109.46733 * 239.99423 * 15 13 11 19 19 C 1.46504 * 119.99744 * 166.44964 * 9 8 7 20 20 C 1.53000 * 109.46825 * 269.99870 * 19 9 8 21 21 C 1.53006 * 109.46673 * 180.02562 * 20 19 9 22 22 C 1.52997 * 109.47095 * 65.00444 * 21 20 19 23 23 C 1.52998 * 109.46919 * 185.00161 * 21 20 19 24 24 N 1.31830 * 118.98992 * 180.27080 * 2 1 3 25 25 H 1.09005 * 109.46911 * 90.00224 * 1 2 3 26 26 H 1.08994 * 109.47806 * 210.00126 * 1 2 3 27 27 H 1.08998 * 109.47123 * 330.00676 * 1 2 3 28 28 H 1.07997 * 120.90496 * 180.02562 * 7 4 3 29 29 H 1.09002 * 109.46501 * 145.65849 * 10 9 8 30 30 H 1.08991 * 109.47366 * 25.66045 * 10 9 8 31 31 H 0.97001 * 120.00093 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.47235 * 30.00158 * 19 9 8 33 33 H 1.08998 * 109.46477 * 150.00245 * 19 9 8 34 34 H 1.09001 * 109.47449 * 300.00157 * 20 19 9 35 35 H 1.09004 * 109.46902 * 60.00703 * 20 19 9 36 36 H 1.08999 * 109.46936 * 304.99919 * 21 20 19 37 37 H 1.08996 * 109.47350 * 59.99495 * 22 21 20 38 38 H 1.08995 * 109.47224 * 180.02562 * 22 21 20 39 39 H 1.09011 * 109.47011 * 299.99725 * 22 21 20 40 40 H 1.08994 * 109.47260 * 59.99798 * 23 21 20 41 41 H 1.08991 * 109.47182 * 180.02562 * 23 21 20 42 42 H 1.09004 * 109.47123 * 300.00377 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1448 1.1508 0.0000 4 6 3.4784 1.1951 -0.0005 5 6 4.1643 2.4521 -0.0011 6 7 4.7084 3.4493 -0.0015 7 6 4.1928 -0.0007 -0.0005 8 6 3.4744 -1.1984 0.0006 9 7 4.1365 -2.4154 0.0001 10 6 5.5697 -2.4695 -0.2988 11 6 5.7665 -2.7538 -1.7656 12 1 6.2344 -3.6754 -2.0789 13 6 5.3493 -1.8374 -2.7075 14 7 5.0060 -0.6233 -2.3367 15 14 5.2717 -2.3206 -4.5103 16 1 5.7072 -3.7320 -4.6637 17 1 3.8779 -2.1759 -5.0019 18 1 6.1687 -1.4377 -5.2983 19 6 3.4033 -3.6482 0.2985 20 6 3.4467 -3.9155 1.8044 21 6 2.6815 -5.2033 2.1159 22 6 3.3998 -6.3915 1.4731 23 6 2.6179 -5.4049 3.6312 24 7 2.1459 -1.1531 -0.0055 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 5.2727 -0.0016 -0.0005 29 1 6.0340 -3.2605 0.2902 30 1 6.0292 -1.5132 -0.0491 31 1 4.7121 0.0213 -2.9993 32 1 2.3670 -3.5413 -0.0219 33 1 3.8635 -4.4819 -0.2319 34 1 4.4830 -4.0225 2.1248 35 1 2.9865 -3.0817 2.3347 36 1 1.6700 -5.1307 1.7163 37 1 4.4113 -6.4641 1.8727 38 1 2.8545 -7.3089 1.6947 39 1 3.4451 -6.2479 0.3935 40 1 2.1063 -4.5584 4.0892 41 1 2.0733 -6.3225 3.8532 42 1 3.6295 -5.4774 4.0309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882116355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:06 Heat of formation + Delta-G solvation = 59.218488 kcal Electronic energy + Delta-G solvation = -23255.250001 eV Core-core repulsion = 20041.984838 eV Total energy + Delta-G solvation = -3213.265163 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72426 -38.78770 -37.71411 -36.84300 -34.76944 -34.02288 -32.99615 -30.64181 -29.13439 -28.47557 -27.89844 -26.10341 -25.12295 -23.80549 -21.98671 -20.74299 -19.85640 -18.53940 -18.26138 -17.12275 -16.75063 -16.26693 -16.02007 -15.82047 -15.48836 -14.98826 -14.85583 -14.56946 -14.48857 -14.25309 -14.01540 -13.94692 -13.59008 -13.42303 -13.21127 -13.02388 -13.00531 -12.95184 -12.78129 -12.57913 -12.16675 -11.96098 -11.67353 -11.64031 -11.46106 -11.39761 -11.37905 -11.25162 -10.64242 -10.34050 -10.03800 -8.33601 -8.19722 -6.35252 -0.15644 0.61678 1.32584 1.41008 1.43727 1.47270 1.98536 2.24391 2.35008 2.60786 3.17008 3.23079 3.50470 3.89221 4.05590 4.12694 4.19932 4.26204 4.45986 4.57047 4.70617 4.75246 4.83849 4.86335 4.90156 4.91749 4.94833 5.00901 5.05365 5.11390 5.13665 5.22341 5.28759 5.33908 5.43781 5.57768 5.59855 5.61423 5.67199 6.06219 6.08827 6.26897 6.58552 6.77727 6.85666 7.35506 7.54941 8.72614 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.010366 B = 0.007168 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.460464 B = 3905.360420 C = 5497.933374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.332 3.668 3 N -0.563 5.563 4 C 0.204 3.796 5 C 0.301 3.699 6 N -0.432 5.432 7 C -0.132 4.132 8 C 0.458 3.542 9 N -0.569 5.569 10 C 0.237 3.763 11 C -0.549 4.549 12 H 0.060 0.940 13 C 0.045 3.955 14 N -0.877 5.877 15 Si 0.939 3.061 16 H -0.265 1.265 17 H -0.292 1.292 18 H -0.285 1.285 19 C 0.127 3.873 20 C -0.113 4.113 21 C -0.089 4.089 22 C -0.147 4.147 23 C -0.141 4.141 24 N -0.587 5.587 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.258 0.742 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -8.295 8.246 13.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.061 3.939 3 N -0.287 5.287 4 C 0.066 3.934 5 C -0.016 4.016 6 N -0.110 5.110 7 C -0.165 4.165 8 C 0.211 3.789 9 N -0.279 5.279 10 C 0.118 3.882 11 C -0.587 4.587 12 H 0.078 0.922 13 C -0.159 4.159 14 N -0.513 5.513 15 Si 0.766 3.234 16 H -0.189 1.189 17 H -0.219 1.219 18 H -0.211 1.211 19 C 0.004 3.996 20 C -0.152 4.152 21 C -0.108 4.108 22 C -0.204 4.204 23 C -0.198 4.198 24 N -0.315 5.315 25 H 0.105 0.895 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.156 0.844 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.923 -6.771 8.159 12.663 hybrid contribution 0.980 -0.217 -1.564 1.859 sum -5.943 -6.989 6.595 11.298 Atomic orbital electron populations 1.20533 0.83322 1.04726 1.04151 1.23323 0.98768 0.81738 0.90030 1.67983 1.06930 1.31316 1.22458 1.16066 0.89615 0.86351 1.01382 1.25025 0.92152 0.91632 0.92749 1.81100 1.09844 1.10768 1.09272 1.21868 1.01850 0.90954 1.01801 1.18475 0.87619 0.87205 0.85627 1.47684 1.10053 1.02155 1.67996 1.19297 0.76790 0.97830 0.94292 1.21748 1.39827 1.04504 0.92647 0.92211 1.25505 0.94066 0.94434 1.01898 1.69881 1.43496 1.03635 1.34251 0.85810 0.77030 0.78810 0.81751 1.18874 1.21868 1.21131 1.21421 0.96849 0.85823 0.95469 1.21904 1.00374 0.97558 0.95376 1.21016 0.99296 0.93863 0.96645 1.21873 1.00442 0.97624 1.00448 1.21786 1.01831 1.01760 0.94466 1.67773 1.08032 1.30912 1.24787 0.89526 0.88654 0.88740 0.84427 0.92881 0.94687 0.93205 0.91381 0.91011 0.92384 0.93461 0.91182 0.92763 0.91662 0.93159 0.93071 0.91584 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.75 10.31 71.24 0.73 -1.02 16 2 C 0.33 12.10 7.64 138.80 1.06 13.16 16 3 N -0.56 -22.23 10.27 -181.73 -1.87 -24.10 16 4 C 0.20 8.44 6.61 40.40 0.27 8.71 16 5 C 0.30 12.28 15.59 88.33 1.38 13.66 16 6 N -0.43 -17.82 18.54 19.00 0.35 -17.47 16 7 C -0.13 -5.64 6.41 22.87 0.15 -5.49 16 8 C 0.46 19.22 6.48 133.19 0.86 20.08 16 9 N -0.57 -22.72 2.50 -707.68 -1.77 -24.49 16 10 C 0.24 10.01 5.53 85.63 0.47 10.49 16 11 C -0.55 -26.05 9.40 25.60 0.24 -25.81 16 12 H 0.06 2.82 7.85 -2.91 -0.02 2.80 16 13 C 0.04 2.19 5.34 84.65 0.45 2.64 16 14 N -0.88 -44.42 9.05 21.45 0.19 -44.22 16 15 Si 0.94 40.94 29.56 68.60 2.03 42.97 16 16 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 18 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 19 C 0.13 4.24 5.32 86.38 0.46 4.70 16 20 C -0.11 -3.08 5.01 30.60 0.15 -2.92 16 21 C -0.09 -1.92 2.92 -10.79 -0.03 -1.95 16 22 C -0.15 -2.95 8.95 71.98 0.64 -2.30 16 23 C -0.14 -2.57 9.19 71.98 0.66 -1.91 16 24 N -0.59 -23.19 9.12 -185.54 -1.69 -24.88 16 25 H 0.09 2.05 8.14 -2.38 -0.02 2.04 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.14 6.18 5.68 -2.91 -0.02 6.17 16 29 H 0.05 2.00 8.10 -2.39 -0.02 1.98 16 30 H 0.04 1.57 5.66 -2.39 -0.01 1.56 16 31 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 32 H 0.07 2.37 7.26 -2.39 -0.02 2.36 16 33 H 0.07 2.39 6.49 -2.39 -0.02 2.37 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 1.11 6.57 -2.38 -0.02 1.10 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -54.12 350.53 5.77 -48.35 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.02 Total: 11.80 kcal Atomic # 6 Polarization: 24.54 SS G_CDS: 7.50 Total: 32.04 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -4.78 Total: -135.16 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -54.12 5.77 -48.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882116355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.571 kcal (2) G-P(sol) polarization free energy of solvation -54.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds