Wall clock time and date at job start Fri Apr 10 2020 19:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.99780 * 2 1 4 4 C 1.38217 * 119.99780 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99725 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99523 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47235 * 90.00331 * 6 5 4 8 8 N 1.46898 * 109.47492 * 179.97438 * 7 6 5 9 9 C 1.46900 * 111.00355 * 170.00073 * 8 7 6 10 10 C 1.53235 * 109.34263 * 187.25389 * 9 8 7 11 11 N 1.47086 * 108.51886 * 306.16546 * 10 9 8 12 12 C 1.36930 * 120.88084 * 231.18344 * 11 10 9 13 13 H 1.08003 * 120.00034 * 27.13616 * 12 11 10 14 14 C 1.38810 * 119.99851 * 206.85031 * 12 11 10 15 15 N 1.31624 * 120.00188 * 17.17041 * 14 12 11 16 16 Si 1.86800 * 120.00209 * 197.16621 * 14 12 11 17 17 H 1.48501 * 109.47038 * 90.00165 * 16 14 12 18 18 H 1.48496 * 109.47422 * 210.00457 * 16 14 12 19 19 H 1.48499 * 109.47085 * 330.00676 * 16 14 12 20 20 C 1.47081 * 118.23455 * 51.46100 * 11 10 9 21 21 C 1.46901 * 110.99711 * 294.29927 * 8 7 6 22 22 C 1.38209 * 120.00313 * 0.25790 * 5 4 3 23 23 C 1.38209 * 119.99591 * 180.02562 * 2 1 3 24 24 C 1.50694 * 120.00495 * 0.02562 * 23 2 1 25 25 H 1.09006 * 109.46471 * 90.00115 * 1 2 3 26 26 H 1.08991 * 109.47305 * 209.99901 * 1 2 3 27 27 H 1.08993 * 109.47130 * 330.00482 * 1 2 3 28 28 H 1.08002 * 120.00526 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.00326 * 179.97438 * 4 3 2 30 30 H 1.08994 * 109.47590 * 330.00255 * 6 5 4 31 31 H 1.09005 * 109.47180 * 209.99792 * 6 5 4 32 32 H 1.09006 * 109.47130 * 59.99221 * 7 6 5 33 33 H 1.09008 * 109.47089 * 299.99901 * 7 6 5 34 34 H 1.09002 * 109.49350 * 67.29049 * 9 8 7 35 35 H 1.08999 * 109.49121 * 307.21323 * 9 8 7 36 36 H 1.08998 * 109.62971 * 186.46211 * 10 9 8 37 37 H 1.09001 * 109.62881 * 65.87432 * 10 9 8 38 38 H 0.96996 * 120.00064 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.63185 * 68.25003 * 20 11 10 40 40 H 1.08998 * 109.62646 * 188.83355 * 20 11 10 41 41 H 1.09000 * 109.49497 * 292.70822 * 21 8 7 42 42 H 1.08999 * 109.49178 * 52.78806 * 21 8 7 43 43 H 1.07998 * 120.00154 * 179.72516 * 22 5 4 44 44 H 1.09002 * 109.47124 * 89.99543 * 24 23 2 45 45 H 1.08999 * 109.47220 * 209.99795 * 24 23 2 46 46 H 1.08997 * 109.47262 * 330.00037 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 6.2898 0.0006 1.4404 8 7 7.7588 0.0000 1.4393 9 6 8.2864 0.2386 2.7894 10 6 9.8073 0.4108 2.7168 11 7 10.3769 -0.7547 2.0236 12 6 11.4119 -1.4628 2.5734 13 1 11.5415 -1.4853 3.6454 14 6 12.2911 -2.1566 1.7533 15 7 12.3523 -1.8772 0.4685 16 14 13.3875 -3.4868 2.4730 17 1 12.6865 -4.7944 2.4088 18 1 14.6496 -3.5630 1.6944 19 1 13.6978 -3.1606 3.8881 20 6 9.8092 -1.1357 0.7213 21 6 8.2843 -1.2505 0.8752 22 6 3.5807 -1.1970 -0.0054 23 6 2.1980 -1.1970 -0.0005 24 6 1.4446 -2.5020 -0.0017 25 1 -0.3632 0.0000 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6583 2.1327 -0.0004 29 1 4.1205 2.1326 -0.0010 30 1 6.1417 0.8897 -0.5161 31 1 6.1417 -0.8903 -0.5154 32 1 5.9268 -0.8892 1.9549 33 1 5.9269 0.8908 1.9542 34 1 8.0466 -0.6107 3.4290 35 1 7.8373 1.1425 3.2008 36 1 10.2172 0.4736 3.7248 37 1 10.0470 1.3190 2.1637 38 1 12.9669 -2.3617 -0.1044 39 1 10.0491 -0.3733 -0.0199 40 1 10.2204 -2.0958 0.4095 41 1 8.0445 -2.0791 1.5415 42 1 7.8337 -1.4265 -0.1015 43 1 4.1206 -2.1323 -0.0099 44 1 1.2632 -2.8160 -1.0297 45 1 2.0335 -3.2620 0.5118 46 1 0.4920 -2.3721 0.5118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891902076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:17 Heat of formation + Delta-G solvation = 39.866160 kcal Electronic energy + Delta-G solvation = -22567.136948 eV Core-core repulsion = 19456.572949 eV Total energy + Delta-G solvation = -3110.563999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -39.82318 -38.10014 -35.25593 -33.80556 -32.38393 -31.47292 -29.85286 -29.77359 -27.53591 -26.69326 -25.13832 -23.23538 -22.53512 -22.17414 -21.36033 -19.82874 -19.04899 -16.77135 -16.08931 -15.92670 -15.27936 -14.75948 -14.57845 -14.49944 -14.27678 -13.84005 -13.56440 -13.40312 -13.20871 -13.09394 -13.00697 -12.87615 -12.47837 -12.25709 -12.18482 -12.04521 -11.43168 -11.32293 -11.13640 -11.03126 -10.84424 -10.76280 -10.68927 -10.35435 -10.23251 -9.99848 -9.70042 -9.55211 -8.80344 -8.48978 -8.44194 -7.75789 -6.63234 -5.75335 -3.16573 1.26950 1.32782 3.39324 3.46034 3.47411 3.63196 4.38321 4.52727 4.65441 4.69335 4.87616 4.91456 5.07258 5.18571 5.27754 5.28826 5.40768 5.45443 5.46758 5.49055 5.53864 5.61986 5.62971 5.67678 5.79667 5.87822 5.97904 6.01811 6.08097 6.15720 6.20989 6.25752 6.31705 6.38764 6.40513 6.54785 6.59471 6.67943 6.73986 6.96531 6.99095 7.29625 7.66806 7.69610 7.75549 7.86082 8.46660 9.24245 9.87721 10.46729 11.33371 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.031328 B = 0.002889 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.553771 B = 9688.029146 C =10105.492027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.116 4.116 4 C -0.118 4.118 5 C -0.073 4.073 6 C -0.079 4.079 7 C 0.063 3.937 8 N -0.534 5.534 9 C 0.045 3.955 10 C 0.149 3.851 11 N -0.596 5.596 12 C -0.251 4.251 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.904 5.904 16 Si 0.902 3.098 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.179 3.821 21 C 0.032 3.968 22 C -0.114 4.114 23 C -0.087 4.087 24 C -0.117 4.117 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.254 0.746 39 H 0.026 0.974 40 H 0.087 0.913 41 H 0.023 0.977 42 H 0.062 0.938 43 H 0.120 0.880 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.672 3.275 -1.559 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.074 4.074 6 C -0.116 4.116 7 C -0.065 4.065 8 N -0.258 5.258 9 C -0.084 4.084 10 C 0.022 3.978 11 N -0.319 5.319 12 C -0.380 4.380 13 H 0.083 0.917 14 C -0.198 4.198 15 N -0.548 5.548 16 Si 0.733 3.267 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.205 1.205 20 C 0.053 3.947 21 C -0.097 4.097 22 C -0.132 4.132 23 C -0.087 4.087 24 C -0.173 4.173 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.105 0.895 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.138 0.862 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.368 3.579 -1.957 22.737 hybrid contribution 0.334 -1.315 0.799 1.575 sum -22.034 2.264 -1.158 22.180 Atomic orbital electron populations 1.20826 0.91609 1.02604 1.02094 1.19703 0.95750 0.92755 1.01660 1.20974 0.94204 0.97236 1.01037 1.21057 0.93980 0.97770 1.00791 1.19944 0.95924 0.92960 0.98538 1.20640 0.89496 1.03769 0.97739 1.22019 0.89024 1.00096 0.95356 1.61959 1.05165 1.36268 1.22452 1.22601 0.98565 0.98830 0.88423 1.20979 0.89624 0.90848 0.96346 1.44150 1.37675 1.29446 1.20670 1.19208 1.03665 1.24050 0.91100 0.91674 1.25028 0.97484 1.01282 0.96022 1.70033 1.39006 1.41577 1.04223 0.86283 0.79829 0.82279 0.78356 1.21535 1.21744 1.20482 1.20954 0.85839 1.00902 0.87050 1.23029 1.00203 0.88766 0.97663 1.20960 0.93308 0.97859 1.01074 1.19727 0.93675 0.94790 1.00527 1.20850 1.00013 0.94238 1.02232 0.91420 0.91342 0.91836 0.86333 0.86012 0.90138 0.90779 0.95636 0.91498 0.95563 0.92136 0.92681 0.95675 0.93642 0.95556 0.89458 0.95836 0.91980 0.86183 0.91274 0.91622 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.60 36.01 0.35 -0.50 16 2 C -0.10 -1.00 5.88 -104.62 -0.62 -1.62 16 3 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 4 C -0.12 -1.34 9.70 -39.58 -0.38 -1.73 16 5 C -0.07 -0.90 5.13 -104.62 -0.54 -1.44 16 6 C -0.08 -1.06 5.28 -27.88 -0.15 -1.20 16 7 C 0.06 0.95 4.94 -3.83 -0.02 0.93 16 8 N -0.53 -9.78 4.63 -234.02 -1.08 -10.86 16 9 C 0.05 0.84 5.62 -3.70 -0.02 0.82 16 10 C 0.15 3.26 6.69 -3.60 -0.02 3.23 16 11 N -0.60 -15.47 3.03 -171.73 -0.52 -16.00 16 12 C -0.25 -7.03 9.63 -15.06 -0.15 -7.17 16 13 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 14 C 0.00 0.00 4.93 -17.43 -0.09 -0.08 16 15 N -0.90 -26.60 11.16 55.49 0.62 -25.98 16 16 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 C 0.18 4.41 5.45 -3.36 -0.02 4.39 16 21 C 0.03 0.65 5.48 -3.46 -0.02 0.63 16 22 C -0.11 -1.36 9.36 -39.58 -0.37 -1.73 16 23 C -0.09 -0.94 5.88 -104.63 -0.62 -1.55 16 24 C -0.12 -0.96 9.60 36.00 0.35 -0.61 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.44 5.95 -51.93 -0.31 0.14 16 27 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 32 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 33 H 0.07 0.95 7.97 -51.92 -0.41 0.53 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.98 7.99 -51.93 -0.41 0.56 16 36 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 1.12 6.16 -51.93 -0.32 0.80 16 43 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 46 H 0.07 0.48 5.95 -51.93 -0.31 0.17 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -30.48 358.64 -11.16 -41.64 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.86 Total: -1.92 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.69 Total: -9.22 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.98 Total: -52.84 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.48 -11.16 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891902076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.510 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds