Wall clock time and date at job start Fri Apr 10 2020 19:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 119.99780 * 2 1 4 4 C 1.38217 * 119.99780 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99725 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99523 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47235 * 90.00331 * 6 5 4 8 8 N 1.46898 * 109.47492 * 179.97438 * 7 6 5 9 9 C 1.46900 * 111.00355 * 170.00073 * 8 7 6 10 10 C 1.53235 * 109.34263 * 187.25389 * 9 8 7 11 11 N 1.47086 * 108.51886 * 306.16546 * 10 9 8 12 12 C 1.36930 * 120.88084 * 231.18344 * 11 10 9 13 13 H 1.08003 * 120.00034 * 27.13616 * 12 11 10 14 14 C 1.38810 * 119.99851 * 206.85031 * 12 11 10 15 15 N 1.31624 * 120.00188 * 17.17041 * 14 12 11 16 16 Si 1.86800 * 120.00209 * 197.16621 * 14 12 11 17 17 H 1.48501 * 109.47038 * 90.00165 * 16 14 12 18 18 H 1.48496 * 109.47422 * 210.00457 * 16 14 12 19 19 H 1.48499 * 109.47085 * 330.00676 * 16 14 12 20 20 C 1.47081 * 118.23455 * 51.46100 * 11 10 9 21 21 C 1.46901 * 110.99711 * 294.29927 * 8 7 6 22 22 C 1.38209 * 120.00313 * 0.25790 * 5 4 3 23 23 C 1.38209 * 119.99591 * 180.02562 * 2 1 3 24 24 C 1.50694 * 120.00495 * 0.02562 * 23 2 1 25 25 H 1.09006 * 109.46471 * 90.00115 * 1 2 3 26 26 H 1.08991 * 109.47305 * 209.99901 * 1 2 3 27 27 H 1.08993 * 109.47130 * 330.00482 * 1 2 3 28 28 H 1.08002 * 120.00526 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.00326 * 179.97438 * 4 3 2 30 30 H 1.08994 * 109.47590 * 330.00255 * 6 5 4 31 31 H 1.09005 * 109.47180 * 209.99792 * 6 5 4 32 32 H 1.09006 * 109.47130 * 59.99221 * 7 6 5 33 33 H 1.09008 * 109.47089 * 299.99901 * 7 6 5 34 34 H 1.09002 * 109.49350 * 67.29049 * 9 8 7 35 35 H 1.08999 * 109.49121 * 307.21323 * 9 8 7 36 36 H 1.08998 * 109.62971 * 186.46211 * 10 9 8 37 37 H 1.09001 * 109.62881 * 65.87432 * 10 9 8 38 38 H 0.96996 * 120.00064 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.63185 * 68.25003 * 20 11 10 40 40 H 1.08998 * 109.62646 * 188.83355 * 20 11 10 41 41 H 1.09000 * 109.49497 * 292.70822 * 21 8 7 42 42 H 1.08999 * 109.49178 * 52.78806 * 21 8 7 43 43 H 1.07998 * 120.00154 * 179.72516 * 22 5 4 44 44 H 1.09002 * 109.47124 * 89.99543 * 24 23 2 45 45 H 1.08999 * 109.47220 * 209.99795 * 24 23 2 46 46 H 1.08997 * 109.47262 * 330.00037 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 6.2898 0.0006 1.4404 8 7 7.7588 0.0000 1.4393 9 6 8.2864 0.2386 2.7894 10 6 9.8073 0.4108 2.7168 11 7 10.3769 -0.7547 2.0236 12 6 11.4119 -1.4628 2.5734 13 1 11.5415 -1.4853 3.6454 14 6 12.2911 -2.1566 1.7533 15 7 12.3523 -1.8772 0.4685 16 14 13.3875 -3.4868 2.4730 17 1 12.6865 -4.7944 2.4088 18 1 14.6496 -3.5630 1.6944 19 1 13.6978 -3.1606 3.8881 20 6 9.8092 -1.1357 0.7213 21 6 8.2843 -1.2505 0.8752 22 6 3.5807 -1.1970 -0.0054 23 6 2.1980 -1.1970 -0.0005 24 6 1.4446 -2.5020 -0.0017 25 1 -0.3632 0.0000 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6583 2.1327 -0.0004 29 1 4.1205 2.1326 -0.0010 30 1 6.1417 0.8897 -0.5161 31 1 6.1417 -0.8903 -0.5154 32 1 5.9268 -0.8892 1.9549 33 1 5.9269 0.8908 1.9542 34 1 8.0466 -0.6107 3.4290 35 1 7.8373 1.1425 3.2008 36 1 10.2172 0.4736 3.7248 37 1 10.0470 1.3190 2.1637 38 1 12.9669 -2.3617 -0.1044 39 1 10.0491 -0.3733 -0.0199 40 1 10.2204 -2.0958 0.4095 41 1 8.0445 -2.0791 1.5415 42 1 7.8337 -1.4265 -0.1015 43 1 4.1206 -2.1323 -0.0099 44 1 1.2632 -2.8160 -1.0297 45 1 2.0335 -3.2620 0.5118 46 1 0.4920 -2.3721 0.5118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891902076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:14 Heat of formation + Delta-G solvation = 23.830042 kcal Electronic energy + Delta-G solvation = -22567.832326 eV Core-core repulsion = 19456.572949 eV Total energy + Delta-G solvation = -3111.259377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.67275 -39.65596 -36.72814 -35.10238 -33.40583 -32.99613 -31.63142 -30.99167 -28.57372 -27.91057 -26.38569 -24.86719 -24.24601 -23.05554 -22.63086 -20.83812 -20.71940 -18.73816 -17.21386 -16.82437 -16.71673 -16.26896 -15.91869 -15.59332 -15.34304 -15.32024 -15.11151 -14.95340 -14.86738 -14.09374 -13.93640 -13.58391 -13.53693 -13.41602 -13.25817 -13.10636 -12.97123 -12.66356 -12.63193 -12.46298 -12.23078 -12.13374 -12.03159 -11.85786 -11.72338 -11.66169 -11.48693 -11.29857 -10.60042 -9.62170 -9.34453 -9.21431 -8.69631 -7.88702 -5.33921 0.44206 0.50788 1.45669 1.46921 1.56201 2.49684 2.77555 3.02280 3.26281 3.67217 3.85192 3.93302 4.06433 4.10088 4.17573 4.25595 4.30521 4.34046 4.40734 4.50330 4.57485 4.62020 4.64560 4.71099 4.72866 4.78077 4.85683 4.87242 4.89335 4.95051 5.02359 5.03601 5.08900 5.14634 5.21817 5.32048 5.35544 5.43498 5.58356 5.60016 5.66481 5.77131 5.79598 6.16147 6.20636 6.26390 6.36580 7.11820 7.82345 8.37174 9.18138 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.031328 B = 0.002889 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.553771 B = 9688.029146 C =10105.492027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.104 4.104 3 C -0.122 4.122 4 C -0.127 4.127 5 C -0.088 4.088 6 C -0.069 4.069 7 C 0.071 3.929 8 N -0.541 5.541 9 C 0.055 3.945 10 C 0.144 3.856 11 N -0.616 5.616 12 C -0.265 4.265 13 H 0.067 0.933 14 C -0.053 4.053 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.285 1.285 18 H -0.293 1.293 19 H -0.268 1.268 20 C 0.186 3.814 21 C 0.050 3.950 22 C -0.130 4.130 23 C -0.098 4.098 24 C -0.116 4.116 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.082 0.918 34 H 0.021 0.979 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.251 0.749 39 H -0.001 1.001 40 H 0.056 0.944 41 H 0.015 0.985 42 H 0.081 0.919 43 H 0.118 0.882 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.023 3.517 -0.735 25.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.104 4.104 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.089 4.089 6 C -0.107 4.107 7 C -0.057 4.057 8 N -0.266 5.266 9 C -0.074 4.074 10 C 0.018 3.982 11 N -0.340 5.340 12 C -0.395 4.395 13 H 0.085 0.915 14 C -0.248 4.248 15 N -0.582 5.582 16 Si 0.798 3.202 17 H -0.212 1.212 18 H -0.220 1.220 19 H -0.193 1.193 20 C 0.060 3.940 21 C -0.079 4.079 22 C -0.148 4.148 23 C -0.098 4.098 24 C -0.172 4.172 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.158 0.842 29 H 0.148 0.852 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.039 0.961 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.017 0.983 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.099 0.901 43 H 0.136 0.864 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.749 3.839 -1.114 25.070 hybrid contribution 1.004 -1.316 0.537 1.740 sum -23.745 2.523 -0.576 23.886 Atomic orbital electron populations 1.20883 0.89504 1.03647 1.02991 1.20105 0.97411 0.92432 1.00423 1.21283 0.93964 0.98377 1.00361 1.21228 0.94713 0.97718 1.00877 1.19866 0.95099 0.93702 1.00212 1.20499 0.90548 1.03185 0.96470 1.22032 0.86380 1.00620 0.96653 1.61917 1.07436 1.34936 1.22304 1.22467 0.96154 1.00171 0.88635 1.21133 0.91933 0.89094 0.95993 1.44444 1.37713 1.30768 1.21053 1.19543 1.04137 1.24400 0.91402 0.91491 1.25825 0.99188 1.03364 0.96405 1.70192 1.39913 1.42621 1.05477 0.85227 0.77677 0.79338 0.77973 1.21194 1.21989 1.19286 1.20708 0.88825 0.98216 0.86209 1.22689 0.96935 0.89481 0.98788 1.21089 0.94192 0.97716 1.01852 1.20048 0.93423 0.96234 1.00075 1.20892 1.00371 0.93006 1.02955 0.90471 0.90412 0.90749 0.84238 0.85173 0.90375 0.91656 0.95863 0.90006 0.96094 0.88785 0.92067 0.96491 0.94013 0.98257 0.92555 0.96647 0.90062 0.86414 0.90481 0.91691 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.60 71.24 0.68 -0.65 16 2 C -0.10 -1.87 5.88 -19.87 -0.12 -1.99 16 3 C -0.12 -2.26 9.70 22.27 0.22 -2.04 16 4 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 5 C -0.09 -2.09 5.13 -19.87 -0.10 -2.20 16 6 C -0.07 -1.80 5.28 29.85 0.16 -1.64 16 7 C 0.07 2.01 4.94 86.30 0.43 2.44 16 8 N -0.54 -19.30 4.63 -894.30 -4.14 -23.44 16 9 C 0.05 1.97 5.62 86.38 0.49 2.45 16 10 C 0.14 6.29 6.69 86.35 0.58 6.87 16 11 N -0.62 -32.54 3.03 -697.23 -2.11 -34.66 16 12 C -0.26 -15.05 9.63 84.03 0.81 -14.24 16 13 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 14 C -0.05 -3.01 4.93 84.86 0.42 -2.59 16 15 N -0.94 -56.72 11.16 21.65 0.24 -56.47 16 16 Si 0.97 45.71 29.59 68.60 2.03 47.74 16 17 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 18 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 C 0.19 9.50 5.45 86.50 0.47 9.97 16 21 C 0.05 2.03 5.48 86.54 0.47 2.50 16 22 C -0.13 -3.01 9.36 22.27 0.21 -2.80 16 23 C -0.10 -1.94 5.88 -19.87 -0.12 -2.06 16 24 C -0.12 -1.68 9.60 71.23 0.68 -0.99 16 25 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.08 0.76 5.95 -2.39 -0.01 0.75 16 27 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 28 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 29 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 31 H 0.06 1.78 6.34 -2.38 -0.02 1.76 16 32 H 0.02 0.68 8.12 -2.38 -0.02 0.66 16 33 H 0.08 2.11 7.97 -2.38 -0.02 2.09 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 2.76 7.99 -2.39 -0.02 2.74 16 36 H 0.06 2.54 7.95 -2.39 -0.02 2.52 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.06 3.19 6.12 -2.39 -0.01 3.18 16 41 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.08 2.94 6.16 -2.39 -0.01 2.92 16 43 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 44 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 0.94 8.09 -2.39 -0.02 0.92 16 46 H 0.08 0.94 5.95 -2.39 -0.01 0.92 16 Total: -1.00 -66.20 358.64 2.44 -63.75 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.93 Total: 12.53 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.49 Total: -9.45 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -6.01 Total: -114.57 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -66.20 2.44 -63.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891902076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.584 kcal (2) G-P(sol) polarization free energy of solvation -66.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds