Wall clock time and date at job start Fri Apr 10 2020 19:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38242 * 119.69399 * 2 1 4 4 C 1.38412 * 118.84740 * 180.39130 * 3 2 1 5 5 C 1.50697 * 120.56738 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.46806 * 260.02059 * 5 4 3 7 7 C 1.46897 * 110.99827 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47022 * 179.97438 * 7 6 5 9 9 C 1.53008 * 109.47249 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47183 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99820 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99877 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00106 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99882 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47211 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47196 * 120.00004 * 14 12 10 17 17 H 1.48500 * 109.47068 * 239.99950 * 14 12 10 18 18 C 1.39191 * 118.86310 * 0.04079 * 4 3 2 19 19 C 1.37599 * 119.17966 * 359.77998 * 18 4 3 20 20 N 1.31514 * 119.70015 * 180.27182 * 2 1 3 21 21 C 1.50718 * 122.33896 * 180.48924 * 19 18 4 22 22 C 1.52723 * 110.57146 * 342.09350 * 21 19 18 23 23 C 1.53324 * 108.43808 * 51.30070 * 22 21 19 24 24 C 1.50497 * 117.97550 * 179.61616 * 18 4 3 25 25 H 1.09002 * 109.47271 * 269.72502 * 1 2 3 26 26 H 1.08998 * 109.47364 * 29.72367 * 1 2 3 27 27 H 1.09005 * 109.46616 * 149.72632 * 1 2 3 28 28 H 1.08004 * 120.57754 * 0.41496 * 3 2 1 29 29 H 1.08999 * 109.47580 * 20.01905 * 5 4 3 30 30 H 1.09000 * 109.47163 * 140.02378 * 5 4 3 31 31 H 1.00896 * 111.00185 * 56.04738 * 6 5 4 32 32 H 1.09000 * 109.47210 * 299.99924 * 7 6 5 33 33 H 1.09005 * 109.47306 * 60.00268 * 7 6 5 34 34 H 1.09000 * 109.47132 * 300.00052 * 8 7 6 35 35 H 1.08998 * 109.47109 * 60.00287 * 8 7 6 36 36 H 1.09000 * 109.47126 * 300.00093 * 9 8 7 37 37 H 1.08998 * 109.46800 * 60.00135 * 9 8 7 38 38 H 0.96994 * 119.99857 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.25476 * 102.37294 * 21 19 18 40 40 H 1.08999 * 109.25986 * 221.84735 * 21 19 18 41 41 H 1.09008 * 109.63949 * 170.98399 * 22 21 19 42 42 H 1.08997 * 109.64354 * 291.61563 * 22 21 19 43 43 H 1.09002 * 109.68718 * 49.86179 * 23 22 21 44 44 H 1.08996 * 109.69172 * 170.42763 * 23 22 21 45 45 H 1.08998 * 109.25644 * 42.35252 * 24 18 4 46 46 H 1.09001 * 109.22373 * 282.89056 * 24 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1917 1.2009 0.0000 4 6 3.5757 1.1805 -0.0083 5 6 4.3611 2.4665 -0.0080 6 7 4.8131 2.7645 -1.3737 7 6 5.5846 4.0140 -1.4120 8 6 6.0375 4.2899 -2.8471 9 6 6.8405 5.5917 -2.8872 10 6 7.2872 5.8631 -4.3007 11 1 7.0242 5.1761 -5.0913 12 6 8.0306 6.9890 -4.5845 13 7 8.3504 7.8259 -3.6217 14 14 8.5836 7.3258 -6.3367 15 1 8.0984 6.2403 -7.2262 16 1 8.0259 8.6251 -6.7907 17 1 10.0669 7.3795 -6.3859 18 6 4.2295 -0.0483 -0.0172 19 6 3.4840 -1.2049 -0.0129 20 7 2.1585 -1.1424 -0.0054 21 6 4.1176 -2.5724 -0.0111 22 6 5.5768 -2.4884 -0.4540 23 6 6.2769 -1.4124 0.3843 24 6 5.7343 -0.0472 -0.0350 25 1 -0.3634 -0.0049 1.0277 26 1 -0.3634 0.8924 -0.5095 27 1 -0.3633 -0.8876 -0.5181 28 1 1.6562 2.1388 0.0067 29 1 3.7287 3.2786 0.3506 30 1 5.2265 2.3636 0.6467 31 1 4.0332 2.8010 -2.0128 32 1 4.9609 4.8369 -1.0629 33 1 6.4585 3.9214 -0.7671 34 1 6.6613 3.4669 -3.1958 35 1 5.1639 4.3824 -3.4924 36 1 6.2163 6.4145 -2.5387 37 1 7.7141 5.4997 -2.2418 38 1 8.8737 8.6177 -3.8213 39 1 4.0708 -2.9889 0.9952 40 1 3.5718 -3.2225 -0.6949 41 1 6.0638 -3.4507 -0.2956 42 1 5.6245 -2.2194 -1.5092 43 1 6.0722 -1.5798 1.4418 44 1 7.3517 -1.4505 0.2074 45 1 6.1014 0.7128 0.6547 46 1 6.0812 0.1836 -1.0422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892929832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:27 Heat of formation + Delta-G solvation = -24.359220 kcal Electronic energy + Delta-G solvation = -22260.309522 eV Core-core repulsion = 19146.960501 eV Total energy + Delta-G solvation = -3113.349021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78112 -38.03546 -37.69546 -35.89415 -34.49064 -32.89213 -32.53858 -30.76926 -28.66058 -28.49631 -26.34088 -24.47155 -23.95753 -23.62278 -22.13856 -21.31429 -20.54446 -18.51022 -18.11506 -16.77932 -16.64278 -16.51745 -16.42220 -15.77926 -15.42887 -15.23942 -14.90052 -14.71991 -14.57723 -14.41265 -14.15677 -13.70275 -13.59276 -13.49197 -13.34314 -13.17666 -13.00889 -12.76211 -12.56223 -12.44402 -12.34277 -12.24211 -11.75487 -11.65352 -11.54216 -11.41776 -11.40492 -11.14173 -10.56142 -10.42823 -10.31159 -9.49629 -9.41127 -8.20840 -6.31526 0.17393 0.23926 1.39620 1.40013 1.53495 2.40556 2.68016 3.12480 3.23190 3.28768 3.58039 3.72080 3.92477 3.99099 4.03464 4.15753 4.24121 4.25881 4.31981 4.41932 4.47297 4.54673 4.66540 4.70350 4.72696 4.75722 4.78878 4.86465 4.91468 4.96706 5.01430 5.07990 5.09592 5.14662 5.18074 5.23863 5.29264 5.36238 5.46849 5.51431 5.53726 5.74952 5.82911 5.85917 5.97906 6.26510 6.36682 6.85697 7.07950 7.37815 8.91239 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.002842 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.492927 B = 9850.016719 C =10571.618509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.112 3.888 3 C -0.175 4.175 4 C -0.046 4.046 5 C 0.099 3.901 6 N -0.681 5.681 7 C 0.074 3.926 8 C -0.092 4.092 9 C 0.026 3.974 10 C -0.542 4.542 11 H 0.058 0.942 12 C -0.001 4.001 13 N -0.933 5.933 14 Si 0.964 3.036 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.118 4.118 19 C 0.117 3.883 20 N -0.512 5.512 21 C -0.063 4.063 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.071 4.071 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.342 0.658 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.048 0.952 36 H -0.009 1.009 37 H -0.007 1.007 38 H 0.264 0.736 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 -19.880 10.676 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.054 4.054 5 C -0.029 4.029 6 N -0.312 5.312 7 C -0.054 4.054 8 C -0.130 4.130 9 C -0.012 4.012 10 C -0.580 4.580 11 H 0.076 0.924 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.789 3.211 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.120 4.120 19 C -0.018 4.018 20 N -0.223 5.223 21 C -0.101 4.101 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.109 4.109 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.166 0.834 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.160 0.840 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.010 0.990 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.730 -20.892 10.765 26.267 hybrid contribution 0.120 2.203 -0.649 2.300 sum -11.609 -18.689 10.116 24.215 Atomic orbital electron populations 1.20739 0.86915 1.04043 1.03799 1.21609 0.98259 0.87975 0.94872 1.22068 0.93997 1.00101 1.03395 1.20348 0.93788 0.95040 0.96272 1.20873 0.98180 0.92494 0.91348 1.60448 1.28169 1.35489 1.07093 1.21843 0.97089 0.89072 0.97432 1.21364 0.98960 0.97488 0.95174 1.18965 0.94043 0.92708 0.95466 1.21728 1.33350 1.07590 0.95355 0.92384 1.25975 0.96159 0.95956 1.01783 1.70096 1.39596 1.13502 1.34186 0.85408 0.78033 0.78264 0.79410 1.18684 1.20313 1.20303 1.20483 0.97960 0.92449 1.01151 1.21399 0.88738 0.96116 0.95515 1.67390 1.10022 1.30515 1.14383 1.20380 0.95760 0.90746 1.03207 1.21564 0.93716 1.00261 0.99738 1.21604 1.00554 0.93442 1.00066 1.20384 0.89233 0.98737 1.02507 0.89478 0.89195 0.90792 0.83374 0.93365 0.89429 0.84003 0.95536 0.91506 0.92929 0.93349 0.99021 0.98873 0.92759 0.89264 0.89992 0.88909 0.92283 0.91331 0.90130 0.90777 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 10.17 71.23 0.72 -0.75 16 2 C 0.11 2.49 6.78 42.61 0.29 2.78 16 3 C -0.18 -3.76 9.41 22.31 0.21 -3.55 16 4 C -0.05 -1.08 5.43 -19.59 -0.11 -1.19 16 5 C 0.10 2.31 5.20 85.56 0.45 2.76 16 6 N -0.68 -18.69 6.49 -517.93 -3.36 -22.06 16 7 C 0.07 2.46 5.69 86.30 0.49 2.95 16 8 C -0.09 -3.77 5.41 30.60 0.17 -3.60 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 11 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 12 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 13 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 14 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 C -0.12 -2.80 5.74 -19.85 -0.11 -2.91 16 19 C 0.12 2.79 6.62 42.28 0.28 3.07 16 20 N -0.51 -12.92 10.10 -172.19 -1.74 -14.66 16 21 C -0.06 -1.14 5.92 29.76 0.18 -0.96 16 22 C -0.11 -1.77 5.97 30.61 0.18 -1.59 16 23 C -0.12 -1.95 5.98 30.63 0.18 -1.76 16 24 C -0.07 -1.51 5.06 29.71 0.15 -1.36 16 25 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.04 8.08 -2.39 -0.02 1.02 16 27 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 29 H 0.05 1.04 8.04 -2.39 -0.02 1.02 16 30 H 0.09 2.00 6.50 -2.39 -0.02 1.99 16 31 H 0.34 9.16 8.72 -89.70 -0.78 8.38 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 43 H 0.07 1.05 8.10 -2.39 -0.02 1.03 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.07 1.55 6.50 -2.39 -0.02 1.54 16 46 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -66.58 367.65 1.29 -65.29 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.16 Total: 16.77 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 3.92 Total: -35.19 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -4.82 Total: -93.45 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.58 1.29 -65.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892929832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.932 kcal (2) G-P(sol) polarization free energy of solvation -66.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds