Wall clock time and date at job start Fri Apr 10 2020 19:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40028 * 126.02770 * 2 1 4 4 C 1.31037 * 108.24556 * 179.97438 * 3 2 1 5 5 C 1.39861 * 108.13015 * 359.78350 * 4 3 2 6 6 C 1.34889 * 126.03536 * 180.02562 * 2 1 3 7 7 C 1.50692 * 126.11178 * 359.95649 * 6 2 1 8 8 N 1.46907 * 109.46901 * 97.55815 * 7 6 2 9 9 C 1.46901 * 110.99984 * 164.15860 * 8 7 6 10 10 C 1.50702 * 109.46957 * 189.99954 * 9 8 7 11 11 H 1.08002 * 120.00029 * 0.02562 * 10 9 8 12 12 C 1.37868 * 119.99917 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00292 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00013 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47319 * 59.99878 * 14 12 10 16 16 H 1.48501 * 109.47333 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47304 * 299.99989 * 14 12 10 18 18 C 1.46894 * 110.99737 * 288.11226 * 8 7 6 19 19 C 1.52999 * 109.47324 * 293.28191 * 18 8 7 20 20 C 1.47197 * 109.47570 * 180.79340 * 19 18 8 21 21 N 5.40660 * 42.34913 * 238.01709 * 2 1 3 22 22 C 1.51292 * 109.55231 * 179.78575 * 5 4 3 23 23 C 1.54338 * 105.27351 * 343.11935 * 22 5 4 24 24 C 1.51327 * 142.36119 * 180.02562 * 4 3 2 25 25 H 1.09001 * 109.47547 * 275.65366 * 1 2 3 26 26 H 1.09002 * 109.47500 * 35.65977 * 1 2 3 27 27 H 1.09006 * 109.47040 * 155.65714 * 1 2 3 28 28 H 1.08994 * 109.47624 * 337.55753 * 7 6 2 29 29 H 1.09000 * 109.47188 * 217.55230 * 7 6 2 30 30 H 1.09001 * 109.47103 * 309.99622 * 9 8 7 31 31 H 1.09000 * 109.47319 * 70.00180 * 9 8 7 32 32 H 0.96999 * 120.00314 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.47725 * 53.28206 * 18 8 7 34 34 H 1.08999 * 109.47310 * 173.28448 * 18 8 7 35 35 H 1.08999 * 109.47067 * 300.79590 * 19 18 8 36 36 H 1.08998 * 109.47241 * 60.79374 * 19 18 8 37 37 H 1.09008 * 110.42209 * 224.08301 * 22 5 4 38 38 H 1.09000 * 110.18553 * 102.03672 * 22 5 4 39 39 H 1.09008 * 110.76847 * 268.04617 * 23 22 5 40 40 H 1.08992 * 110.93193 * 144.71153 * 23 22 5 41 41 H 1.08997 * 110.29149 * 316.17236 * 24 4 3 42 42 H 1.08997 * 110.28957 * 78.29170 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2885 1.1325 0.0000 4 6 3.5363 0.7323 0.0006 5 6 3.5448 -0.6663 0.0059 6 6 2.2585 -1.0908 -0.0005 7 6 1.7965 -2.5251 -0.0002 8 7 1.8189 -3.0471 -1.3733 9 6 1.7441 -4.5141 -1.3801 10 6 2.0150 -5.0244 -2.7720 11 1 2.2225 -4.3285 -3.5714 12 6 1.9991 -6.3797 -3.0245 13 7 1.7480 -7.2272 -2.0508 14 14 2.3356 -7.0123 -4.7497 15 1 3.6910 -6.5834 -5.1786 16 1 2.2599 -8.4954 -4.7567 17 1 1.3228 -6.4611 -5.6854 18 6 0.7379 -2.4610 -2.1769 19 6 -0.6128 -2.9414 -1.6424 20 6 -1.6954 -2.3693 -2.4594 21 7 -2.5308 -1.9291 -3.0893 22 6 4.9735 -1.1640 0.0014 23 6 5.8241 0.0460 -0.4395 24 6 4.9596 1.2463 0.0013 25 1 -0.3634 0.1012 1.0227 26 1 -0.3634 0.8350 -0.5991 27 1 -0.3633 -0.9364 -0.4236 28 1 0.7813 -2.5799 0.3927 29 1 2.4610 -3.1208 0.6257 30 1 2.4876 -4.9191 -0.6935 31 1 0.7492 -4.8287 -1.0651 32 1 1.7364 -8.1807 -2.2286 33 1 0.7873 -1.3739 -2.1149 34 1 0.8485 -2.7711 -3.2159 35 1 -0.6568 -4.0294 -1.6913 36 1 -0.7296 -2.6192 -0.6077 37 1 5.0881 -1.9848 -0.7066 38 1 5.2631 -1.4853 1.0019 39 1 5.9642 0.0466 -1.5205 40 1 6.7858 0.0535 0.0734 41 1 5.0650 2.0685 -0.7064 42 1 5.2441 1.5696 1.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893305900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:41 Heat of formation + Delta-G solvation = 99.173934 kcal Electronic energy + Delta-G solvation = -23183.549377 eV Core-core repulsion = 19972.016813 eV Total energy + Delta-G solvation = -3211.532564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.50250 -39.43129 -37.47852 -37.20550 -34.72596 -33.06631 -32.69342 -31.18488 -29.24427 -27.82359 -27.00973 -26.43687 -25.22065 -22.38864 -21.73627 -20.58793 -19.83645 -18.90988 -18.23110 -17.33356 -17.14812 -16.63752 -16.11159 -15.96132 -15.68642 -15.27671 -15.17478 -14.88983 -14.63757 -14.25514 -13.76223 -13.58262 -13.57283 -13.41953 -13.28921 -13.19572 -12.94012 -12.86432 -12.69511 -12.58629 -12.47359 -12.36061 -11.89504 -11.88641 -11.68939 -11.61106 -11.26993 -11.12307 -10.51592 -9.99446 -9.04484 -8.97305 -8.12546 -6.18379 0.92007 1.45964 1.47584 1.53793 1.57941 1.69111 1.72583 1.85066 2.45946 2.90663 3.17346 3.22568 3.40937 3.75503 3.93324 3.96772 4.08085 4.09959 4.20174 4.31401 4.34199 4.40844 4.45681 4.56462 4.65627 4.74934 4.79720 4.90196 5.00757 5.07428 5.09498 5.28627 5.34511 5.35595 5.38862 5.43384 5.52772 5.73271 5.82188 6.10366 6.21141 6.28302 6.51311 6.61248 6.86549 6.95822 7.50228 8.96726 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.005549 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.098559 B = 5044.362470 C = 6531.310745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.375 5.375 3 N -0.317 5.317 4 C 0.033 3.967 5 C -0.262 4.262 6 C 0.106 3.894 7 C 0.114 3.886 8 N -0.525 5.525 9 C 0.202 3.798 10 C -0.516 4.516 11 H 0.056 0.944 12 C 0.016 3.984 13 N -0.925 5.925 14 Si 0.946 3.054 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.076 3.924 19 C -0.067 4.067 20 C 0.241 3.759 21 N -0.484 5.484 22 C -0.041 4.041 23 C -0.107 4.107 24 C -0.027 4.027 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.015 0.985 31 H 0.003 0.997 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.130 0.870 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 12.297 7.805 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.157 5.157 3 N -0.139 5.139 4 C -0.133 4.133 5 C -0.274 4.274 6 C -0.021 4.021 7 C -0.015 4.015 8 N -0.248 5.248 9 C 0.077 3.923 10 C -0.554 4.554 11 H 0.075 0.925 12 C -0.183 4.183 13 N -0.565 5.565 14 Si 0.773 3.227 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.054 4.054 19 C -0.108 4.108 20 C -0.076 4.076 21 N -0.163 5.163 22 C -0.079 4.079 23 C -0.145 4.145 24 C -0.066 4.066 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.033 0.967 31 H 0.021 0.979 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.832 13.898 6.692 15.534 hybrid contribution -0.150 -1.839 -0.437 1.896 sum 1.682 12.059 6.255 13.689 Atomic orbital electron populations 1.22233 0.73240 1.04974 1.04834 1.48612 1.06846 1.02277 1.58007 1.76910 1.01351 1.08079 1.27600 1.23812 0.94730 0.95747 0.99055 1.20944 0.95422 0.95062 1.15958 1.20283 0.90570 0.90053 1.01156 1.20691 1.01074 0.88122 0.91635 1.62151 1.43735 1.08896 1.10033 1.19573 0.95474 0.80967 0.96288 1.21362 1.46971 0.91416 0.95687 0.92539 1.25549 0.95493 0.97300 0.99926 1.70001 1.50694 1.02693 1.33129 0.85791 0.78797 0.76981 0.81156 1.19928 1.21241 1.20101 1.21960 0.85941 0.98302 0.99182 1.20264 0.89009 1.03334 0.98239 1.29210 0.93334 0.92052 0.93034 1.81152 1.12630 1.11504 1.10977 1.20387 0.87715 0.98276 1.01554 1.22344 0.98469 0.91932 1.01743 1.20646 0.83543 0.98796 1.03585 0.88716 0.89268 0.88765 0.91827 0.88605 0.96722 0.97920 0.92859 0.91325 0.91083 0.86333 0.85225 0.92312 0.90345 0.91284 0.87469 0.89672 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 10.52 127.77 1.34 3.15 16 2 N -0.37 -10.67 3.79 -355.97 -1.35 -12.02 16 3 N -0.32 -10.08 12.58 -46.79 -0.59 -10.67 16 4 C 0.03 0.95 8.10 43.27 0.35 1.30 16 5 C -0.26 -7.86 6.79 -19.93 -0.14 -8.00 16 6 C 0.11 3.18 5.62 41.44 0.23 3.41 16 7 C 0.11 3.31 5.01 85.55 0.43 3.74 16 8 N -0.53 -18.51 4.65 -905.38 -4.21 -22.72 16 9 C 0.20 8.74 4.42 85.56 0.38 9.12 16 10 C -0.52 -25.70 8.55 25.60 0.22 -25.48 16 11 H 0.06 2.85 7.10 -2.91 -0.02 2.83 16 12 C 0.02 0.84 5.46 84.65 0.46 1.30 16 13 N -0.92 -50.24 13.29 21.44 0.28 -49.95 16 14 Si 0.95 41.84 29.54 68.60 2.03 43.87 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 18 C 0.08 2.42 4.55 86.30 0.39 2.81 16 19 C -0.07 -1.78 4.21 28.79 0.12 -1.66 16 20 C 0.24 7.04 15.40 89.45 1.38 8.41 16 21 N -0.48 -16.27 18.53 19.99 0.37 -15.90 16 22 C -0.04 -1.02 6.76 30.49 0.21 -0.82 16 23 C -0.11 -1.99 7.06 31.51 0.22 -1.77 16 24 C -0.03 -0.53 6.76 30.51 0.21 -0.33 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.09 1.80 3.22 -2.38 -0.01 1.79 16 28 H 0.06 1.51 5.39 -2.39 -0.01 1.50 16 29 H 0.10 2.84 7.81 -2.39 -0.02 2.82 16 30 H 0.01 0.70 7.86 -2.39 -0.02 0.68 16 31 H 0.00 0.14 5.91 -2.39 -0.01 0.12 16 32 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 33 H 0.07 2.07 5.93 -2.39 -0.01 2.06 16 34 H 0.07 2.60 6.94 -2.39 -0.02 2.58 16 35 H 0.12 3.62 6.19 -2.39 -0.01 3.60 16 36 H 0.13 2.57 4.73 -2.39 -0.01 2.56 16 37 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -64.03 337.41 3.39 -60.64 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 1.05 Total: 11.53 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 5.81 Total: -4.79 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -5.49 Total: -111.26 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -64.03 3.39 -60.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893305900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.818 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds