Wall clock time and date at job start Fri Apr 10 2020 19:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40088 * 126.03902 * 2 1 4 4 C 1.30835 * 108.21008 * 180.02562 * 3 2 1 5 5 C 1.39875 * 108.19954 * 359.78145 * 4 3 2 6 6 C 1.50695 * 126.04027 * 180.23613 * 5 4 3 7 7 N 1.46897 * 109.47106 * 256.88543 * 6 5 4 8 8 C 1.46903 * 110.99822 * 67.41708 * 7 6 5 9 9 C 1.50703 * 109.46888 * 190.00292 * 8 7 6 10 10 H 1.08002 * 120.00263 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99706 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99847 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00000 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47178 * 90.00204 * 13 11 9 15 15 H 1.48499 * 109.46836 * 209.99864 * 13 11 9 16 16 H 1.48498 * 109.47126 * 329.99826 * 13 11 9 17 17 C 1.46897 * 111.00222 * 191.36823 * 7 6 5 18 18 C 1.53005 * 109.47314 * 76.33870 * 17 7 6 19 19 C 1.47198 * 109.47381 * 184.42892 * 18 17 7 20 20 N 8.52914 * 132.46931 * 184.89015 * 2 1 3 21 21 C 1.34945 * 126.03969 * 180.02562 * 2 1 3 22 22 C 1.50704 * 126.12767 * 359.94012 * 21 2 1 23 23 C 1.52998 * 117.52025 * 228.51355 * 22 21 2 24 24 C 1.52997 * 117.49841 * 297.14385 * 22 21 2 25 25 H 1.09000 * 109.47074 * 274.76875 * 1 2 3 26 26 H 1.08995 * 109.47420 * 34.76676 * 1 2 3 27 27 H 1.09006 * 109.47194 * 154.77350 * 1 2 3 28 28 H 1.07993 * 125.90425 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47677 * 16.88859 * 6 5 4 30 30 H 1.09006 * 109.47550 * 136.88397 * 6 5 4 31 31 H 1.08996 * 109.47309 * 309.99678 * 8 7 6 32 32 H 1.08999 * 109.47224 * 69.99937 * 8 7 6 33 33 H 0.97004 * 120.00128 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.47354 * 196.33921 * 17 7 6 35 35 H 1.08999 * 109.47629 * 316.34115 * 17 7 6 36 36 H 1.08996 * 109.46921 * 304.43572 * 18 17 7 37 37 H 1.09004 * 109.46415 * 64.42887 * 18 17 7 38 38 H 1.09000 * 115.54982 * 82.81355 * 22 21 2 39 39 H 1.09002 * 117.50119 * 214.96555 * 23 22 21 40 40 H 1.08994 * 117.49890 * 359.97438 * 23 22 21 41 41 H 1.09003 * 117.50309 * 359.97438 * 24 22 21 42 42 H 1.09001 * 117.49885 * 144.99062 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 3.5437 -0.6665 0.0041 6 6 4.7679 -1.5452 0.0103 7 7 4.9860 -2.0905 -1.3362 8 6 5.3578 -1.0284 -2.2805 9 6 5.3332 -1.5738 -3.6851 10 1 5.0683 -2.6063 -3.8590 11 6 5.6489 -0.7547 -4.7483 12 7 5.6279 -1.2307 -5.9741 13 14 6.1064 1.0313 -4.4477 14 1 7.5742 1.1397 -4.2494 15 1 5.7036 1.8495 -5.6196 16 1 5.4053 1.5245 -3.2351 17 6 5.9984 -3.1547 -1.3157 18 6 5.3811 -4.4351 -0.7495 19 6 6.4211 -5.4699 -0.6296 20 7 7.2238 -6.2685 -0.5363 21 6 2.2589 -1.0912 -0.0005 22 6 1.7974 -2.5258 0.0001 23 6 2.4374 -3.4739 1.0162 24 6 0.9927 -3.0085 1.2086 25 1 -0.3633 0.0854 1.0241 26 1 -0.3634 0.8441 -0.5860 27 1 -0.3634 -0.9297 -0.4380 28 1 4.4054 1.3710 -0.0011 29 1 5.6358 -0.9573 0.3091 30 1 4.6239 -2.3642 0.7150 31 1 4.6489 -0.2046 -2.1982 32 1 6.3604 -0.6697 -2.0474 33 1 5.8497 -0.6544 -6.7221 34 1 6.3519 -3.3395 -2.3300 35 1 6.8359 -2.8475 -0.6893 36 1 4.9573 -4.2302 0.2336 37 1 4.5949 -4.7858 -1.4182 38 1 1.5355 -2.9358 -0.9753 39 1 2.5965 -4.5077 0.7093 40 1 3.1928 -3.0602 1.6842 41 1 0.7974 -2.2886 2.0034 42 1 0.2012 -3.7360 1.0282 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893311049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:46 Heat of formation + Delta-G solvation = 139.824838 kcal Electronic energy + Delta-G solvation = -23228.415347 eV Core-core repulsion = 20018.645538 eV Total energy + Delta-G solvation = -3209.769809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.15273 -37.53808 -36.92482 -36.07959 -33.16852 -32.56579 -31.28096 -29.99204 -28.00989 -26.67268 -24.62901 -22.91879 -22.80188 -22.32945 -20.48376 -20.14482 -18.80527 -17.23473 -16.94740 -16.52189 -15.70523 -15.08039 -14.88943 -14.67333 -14.47421 -14.18200 -13.80805 -13.53075 -13.34741 -12.99699 -12.74752 -12.54146 -12.41368 -12.35645 -11.98624 -11.84456 -11.71799 -11.60117 -11.35892 -11.11786 -10.74411 -10.61451 -10.56571 -10.47185 -10.17517 -9.95015 -9.79901 -9.25047 -8.96424 -8.55715 -8.00842 -7.42738 -6.04157 -4.00733 2.12648 2.70992 2.96537 3.02493 3.09021 3.30010 3.38546 3.41500 3.73056 4.21975 4.44290 4.52086 4.68382 4.82755 4.92728 5.02633 5.17089 5.26538 5.30437 5.36940 5.40845 5.42913 5.48640 5.50970 5.70284 5.73004 5.77631 5.81357 5.99184 6.06246 6.13870 6.15655 6.26218 6.50496 6.57911 6.89576 6.93320 7.00216 7.27894 7.63580 7.79676 7.87514 8.00116 8.02544 8.65344 9.03871 9.58614 11.08798 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.009805 B = 0.007552 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.111113 B = 3706.636919 C = 5805.997564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.375 5.375 3 N -0.304 5.304 4 C 0.057 3.943 5 C -0.210 4.210 6 C 0.125 3.875 7 N -0.516 5.516 8 C 0.165 3.835 9 C -0.508 4.508 10 H 0.081 0.919 11 C 0.069 3.931 12 N -0.901 5.901 13 Si 0.870 3.130 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.264 1.264 17 C 0.063 3.937 18 C -0.026 4.026 19 C 0.218 3.782 20 N -0.457 5.457 21 C 0.133 3.867 22 C -0.082 4.082 23 C -0.154 4.154 24 C -0.183 4.183 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.176 0.824 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.036 0.964 32 H -0.018 1.018 33 H 0.263 0.737 34 H 0.100 0.900 35 H 0.029 0.971 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.066 -1.231 15.570 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.157 5.157 3 N -0.125 5.125 4 C -0.129 4.129 5 C -0.221 4.221 6 C -0.004 4.004 7 N -0.240 5.240 8 C 0.039 3.961 9 C -0.546 4.546 10 H 0.099 0.901 11 C -0.132 4.132 12 N -0.540 5.540 13 Si 0.697 3.303 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.189 1.189 17 C -0.067 4.067 18 C -0.066 4.066 19 C -0.100 4.100 20 N -0.134 5.134 21 C 0.006 3.994 22 C -0.102 4.102 23 C -0.192 4.192 24 C -0.220 4.220 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.193 0.807 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.000 1.000 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.047 0.953 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.144 0.856 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.231 -1.532 15.352 18.512 hybrid contribution 1.194 1.195 0.016 1.690 sum -9.037 -0.337 15.367 17.831 Atomic orbital electron populations 1.21729 0.74991 1.04153 1.02644 1.48262 1.06109 1.03386 1.57988 1.77306 1.01708 1.07759 1.25725 1.23705 0.95027 0.94790 0.99424 1.19588 0.93851 0.93169 1.15516 1.20443 0.92532 0.95486 0.91935 1.61884 1.44217 1.12303 1.05554 1.20168 0.93532 0.90449 0.91978 1.21041 1.45808 0.99465 0.88278 0.90061 1.24871 0.95226 0.98026 0.95091 1.69889 1.49529 1.36138 0.98451 0.86938 0.79023 0.86084 0.78235 1.20414 1.21361 1.18897 1.21926 0.92454 0.89610 1.02724 1.19431 0.92865 0.90120 1.04216 1.29419 0.94185 0.93916 0.92461 1.81173 1.10803 1.11641 1.09792 1.19763 0.90342 0.88308 1.01012 1.20330 1.04872 0.89019 0.95969 1.22978 0.95468 0.99371 1.01355 1.23057 0.95410 1.03706 0.99809 0.91434 0.89884 0.89500 0.80702 0.95094 0.90903 0.94570 1.00007 0.92761 0.88131 0.95263 0.88141 0.86680 0.85558 0.87818 0.88337 0.89203 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.05 11.28 59.84 0.68 1.73 16 2 N -0.38 -5.41 4.01 -63.89 -0.26 -5.67 16 3 N -0.30 -5.15 12.58 30.62 0.39 -4.76 16 4 C 0.06 0.93 11.25 -17.36 -0.20 0.74 16 5 C -0.21 -3.27 4.64 -105.05 -0.49 -3.76 16 6 C 0.12 1.82 4.84 -4.98 -0.02 1.80 16 7 N -0.52 -9.01 4.40 -237.52 -1.05 -10.06 16 8 C 0.16 3.67 3.65 -4.97 -0.02 3.65 16 9 C -0.51 -13.53 8.78 -34.44 -0.30 -13.84 16 10 H 0.08 2.32 7.56 -52.49 -0.40 1.93 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 12 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 13 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 17 C 0.06 0.98 4.77 -3.82 -0.02 0.97 16 18 C -0.03 -0.30 5.87 -29.52 -0.17 -0.48 16 19 C 0.22 3.05 15.43 -20.76 -0.32 2.72 16 20 N -0.46 -7.57 18.54 42.16 0.78 -6.79 16 21 C 0.13 1.89 6.39 -82.26 -0.53 1.37 16 22 C -0.08 -0.90 5.35 -91.77 -0.49 -1.39 16 23 C -0.15 -1.34 8.43 -26.73 -0.23 -1.56 16 24 C -0.18 -1.48 10.19 -26.73 -0.27 -1.75 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.70 7.66 -51.93 -0.40 0.30 16 28 H 0.18 2.58 8.06 -52.49 -0.42 2.16 16 29 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.07 0.86 4.06 -51.93 -0.21 0.65 16 31 H 0.04 0.86 5.56 -51.93 -0.29 0.57 16 32 H -0.02 -0.40 7.55 -51.93 -0.39 -0.79 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.10 1.90 6.58 -51.93 -0.34 1.56 16 35 H 0.03 0.44 7.99 -51.93 -0.41 0.02 16 36 H 0.10 0.93 6.01 -51.93 -0.31 0.62 16 37 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.87 6.67 -51.93 -0.35 0.52 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -33.21 349.16 -7.32 -40.52 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.07 Total: -0.89 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.47 Total: -7.95 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.64 Total: -53.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.21 -7.32 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893311049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.349 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds