Wall clock time and date at job start Fri Apr 10 2020 19:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40088 * 126.03902 * 2 1 4 4 C 1.30835 * 108.21008 * 180.02562 * 3 2 1 5 5 C 1.39875 * 108.19954 * 359.78145 * 4 3 2 6 6 C 1.50695 * 126.04027 * 180.23613 * 5 4 3 7 7 N 1.46897 * 109.47106 * 256.88543 * 6 5 4 8 8 C 1.46903 * 110.99822 * 67.41708 * 7 6 5 9 9 C 1.50703 * 109.46888 * 190.00292 * 8 7 6 10 10 H 1.08002 * 120.00263 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99706 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99847 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00000 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47178 * 90.00204 * 13 11 9 15 15 H 1.48499 * 109.46836 * 209.99864 * 13 11 9 16 16 H 1.48498 * 109.47126 * 329.99826 * 13 11 9 17 17 C 1.46897 * 111.00222 * 191.36823 * 7 6 5 18 18 C 1.53005 * 109.47314 * 76.33870 * 17 7 6 19 19 C 1.47198 * 109.47381 * 184.42892 * 18 17 7 20 20 N 8.52914 * 132.46931 * 184.89015 * 2 1 3 21 21 C 1.34945 * 126.03969 * 180.02562 * 2 1 3 22 22 C 1.50704 * 126.12767 * 359.94012 * 21 2 1 23 23 C 1.52998 * 117.52025 * 228.51355 * 22 21 2 24 24 C 1.52997 * 117.49841 * 297.14385 * 22 21 2 25 25 H 1.09000 * 109.47074 * 274.76875 * 1 2 3 26 26 H 1.08995 * 109.47420 * 34.76676 * 1 2 3 27 27 H 1.09006 * 109.47194 * 154.77350 * 1 2 3 28 28 H 1.07993 * 125.90425 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47677 * 16.88859 * 6 5 4 30 30 H 1.09006 * 109.47550 * 136.88397 * 6 5 4 31 31 H 1.08996 * 109.47309 * 309.99678 * 8 7 6 32 32 H 1.08999 * 109.47224 * 69.99937 * 8 7 6 33 33 H 0.97004 * 120.00128 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.47354 * 196.33921 * 17 7 6 35 35 H 1.08999 * 109.47629 * 316.34115 * 17 7 6 36 36 H 1.08996 * 109.46921 * 304.43572 * 18 17 7 37 37 H 1.09004 * 109.46415 * 64.42887 * 18 17 7 38 38 H 1.09000 * 115.54982 * 82.81355 * 22 21 2 39 39 H 1.09002 * 117.50119 * 214.96555 * 23 22 21 40 40 H 1.08994 * 117.49890 * 359.97438 * 23 22 21 41 41 H 1.09003 * 117.50309 * 359.97438 * 24 22 21 42 42 H 1.09001 * 117.49885 * 144.99062 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 3.5437 -0.6665 0.0041 6 6 4.7679 -1.5452 0.0103 7 7 4.9860 -2.0905 -1.3362 8 6 5.3578 -1.0284 -2.2805 9 6 5.3332 -1.5738 -3.6851 10 1 5.0683 -2.6063 -3.8590 11 6 5.6489 -0.7547 -4.7483 12 7 5.6279 -1.2307 -5.9741 13 14 6.1064 1.0313 -4.4477 14 1 7.5742 1.1397 -4.2494 15 1 5.7036 1.8495 -5.6196 16 1 5.4053 1.5245 -3.2351 17 6 5.9984 -3.1547 -1.3157 18 6 5.3811 -4.4351 -0.7495 19 6 6.4211 -5.4699 -0.6296 20 7 7.2238 -6.2685 -0.5363 21 6 2.2589 -1.0912 -0.0005 22 6 1.7974 -2.5258 0.0001 23 6 2.4374 -3.4739 1.0162 24 6 0.9927 -3.0085 1.2086 25 1 -0.3633 0.0854 1.0241 26 1 -0.3634 0.8441 -0.5860 27 1 -0.3634 -0.9297 -0.4380 28 1 4.4054 1.3710 -0.0011 29 1 5.6358 -0.9573 0.3091 30 1 4.6239 -2.3642 0.7150 31 1 4.6489 -0.2046 -2.1982 32 1 6.3604 -0.6697 -2.0474 33 1 5.8497 -0.6544 -6.7221 34 1 6.3519 -3.3395 -2.3300 35 1 6.8359 -2.8475 -0.6893 36 1 4.9573 -4.2302 0.2336 37 1 4.5949 -4.7858 -1.4182 38 1 1.5355 -2.9358 -0.9753 39 1 2.5965 -4.5077 0.7093 40 1 3.1928 -3.0602 1.6842 41 1 0.7974 -2.2886 2.0034 42 1 0.2012 -3.7360 1.0282 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893311049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:45 Heat of formation + Delta-G solvation = 118.159841 kcal Electronic energy + Delta-G solvation = -23229.354812 eV Core-core repulsion = 20018.645538 eV Total energy + Delta-G solvation = -3210.709274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.22764 -38.84525 -37.69856 -37.34195 -34.68716 -34.12276 -32.47414 -31.35741 -29.40875 -27.91116 -25.75775 -24.43985 -23.80995 -23.08846 -21.74507 -21.40013 -19.86946 -18.92446 -18.35344 -17.56285 -16.70113 -16.42956 -16.25056 -15.84677 -15.74771 -15.23065 -15.11803 -14.68943 -14.54771 -14.38224 -14.16904 -13.83426 -13.57123 -13.49127 -13.29142 -13.18484 -12.86521 -12.67925 -12.57727 -12.37288 -12.17990 -11.96056 -11.78335 -11.61946 -11.39400 -11.33756 -11.18572 -10.90990 -10.71405 -10.03448 -9.14911 -8.83818 -8.21574 -6.20519 1.04732 1.34233 1.38006 1.47009 1.75681 1.80892 1.90992 1.92510 2.38309 3.03062 3.06281 3.14805 3.70446 3.71838 3.77345 4.12998 4.21537 4.27698 4.34343 4.41402 4.44437 4.47973 4.58261 4.70171 4.70948 4.74159 4.89163 4.96600 5.00145 5.04992 5.11401 5.19836 5.27317 5.32392 5.34971 5.44681 5.47098 5.67869 5.80097 6.10805 6.29638 6.51202 6.67932 6.78395 6.87060 6.87693 7.42665 8.94510 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.009805 B = 0.007552 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.111113 B = 3706.636919 C = 5805.997564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.378 5.378 3 N -0.339 5.339 4 C 0.037 3.963 5 C -0.236 4.236 6 C 0.129 3.871 7 N -0.517 5.517 8 C 0.178 3.822 9 C -0.499 4.499 10 H 0.051 0.949 11 C 0.010 3.990 12 N -0.949 5.949 13 Si 0.929 3.071 14 H -0.270 1.270 15 H -0.290 1.290 16 H -0.252 1.252 17 C 0.063 3.937 18 C -0.010 4.010 19 C 0.242 3.758 20 N -0.502 5.502 21 C 0.139 3.861 22 C -0.107 4.107 23 C -0.149 4.149 24 C -0.160 4.160 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.180 0.820 29 H 0.032 0.968 30 H 0.107 0.893 31 H 0.026 0.974 32 H -0.020 1.020 33 H 0.262 0.738 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.278 -1.737 18.063 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.160 5.160 3 N -0.160 5.160 4 C -0.148 4.148 5 C -0.247 4.247 6 C 0.002 3.998 7 N -0.240 5.240 8 C 0.051 3.949 9 C -0.537 4.537 10 H 0.069 0.931 11 C -0.187 4.187 12 N -0.591 5.591 13 Si 0.754 3.246 14 H -0.195 1.195 15 H -0.217 1.217 16 H -0.176 1.176 17 C -0.067 4.067 18 C -0.050 4.050 19 C -0.075 4.075 20 N -0.180 5.180 21 C 0.010 3.990 22 C -0.126 4.126 23 C -0.186 4.186 24 C -0.197 4.197 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.197 0.803 29 H 0.050 0.950 30 H 0.125 0.875 31 H 0.044 0.956 32 H -0.002 1.002 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.454 -2.036 17.880 21.331 hybrid contribution 1.467 1.294 -0.734 2.089 sum -9.988 -0.743 17.146 19.856 Atomic orbital electron populations 1.22070 0.72780 1.05206 1.04311 1.48643 1.07476 1.02943 1.56958 1.77220 1.02272 1.09445 1.27080 1.23945 0.95271 0.95709 0.99847 1.19780 0.94861 0.92933 1.17143 1.20522 0.92326 0.96563 0.90436 1.61760 1.44398 1.11254 1.06629 1.19827 0.93036 0.91309 0.90776 1.21351 1.43664 0.98100 0.90612 0.93083 1.25672 0.95824 1.02283 0.94908 1.70034 1.51880 1.37718 0.99462 0.85975 0.79177 0.81122 0.78282 1.19489 1.21673 1.17577 1.21842 0.92869 0.90883 1.01070 1.19410 0.92017 0.87385 1.06201 1.29656 0.93518 0.93327 0.90978 1.81206 1.12053 1.13198 1.11562 1.20281 0.90044 0.89695 0.98978 1.20340 1.07977 0.87449 0.96880 1.23154 0.95989 0.99688 0.99803 1.23102 0.95754 1.03271 0.97552 0.89227 0.89963 0.87564 0.80300 0.94977 0.87510 0.95600 1.00193 0.92911 0.92007 0.94249 0.84391 0.85487 0.86217 0.85846 0.88189 0.89264 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 11.28 127.77 1.44 3.15 16 2 N -0.38 -10.36 4.01 -356.04 -1.43 -11.79 16 3 N -0.34 -11.28 12.58 -57.03 -0.72 -12.00 16 4 C 0.04 1.21 11.25 85.24 0.96 2.17 16 5 C -0.24 -6.98 4.64 -20.14 -0.09 -7.07 16 6 C 0.13 3.47 4.84 85.56 0.41 3.88 16 7 N -0.52 -17.30 4.40 -905.37 -3.99 -21.28 16 8 C 0.18 7.85 3.65 85.56 0.31 8.16 16 9 C -0.50 -27.08 8.78 25.60 0.22 -26.86 16 10 H 0.05 3.02 7.56 -2.91 -0.02 3.00 16 11 C 0.01 0.56 5.47 84.66 0.46 1.03 16 12 N -0.95 -58.65 13.96 21.45 0.30 -58.35 16 13 Si 0.93 44.38 27.47 68.60 1.88 46.27 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 16 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 17 C 0.06 1.89 4.77 86.31 0.41 2.30 16 18 C -0.01 -0.21 5.87 28.79 0.17 -0.04 16 19 C 0.24 6.26 15.43 89.44 1.38 7.64 16 20 N -0.50 -16.02 18.54 20.01 0.37 -15.65 16 21 C 0.14 3.67 6.39 41.41 0.26 3.93 16 22 C -0.11 -2.00 5.35 -11.54 -0.06 -2.06 16 23 C -0.15 -1.92 8.43 30.59 0.26 -1.67 16 24 C -0.16 -1.93 10.19 30.59 0.31 -1.62 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.11 1.44 7.66 -2.38 -0.02 1.43 16 28 H 0.18 5.29 8.06 -2.91 -0.02 5.26 16 29 H 0.03 0.87 8.10 -2.39 -0.02 0.85 16 30 H 0.11 2.09 4.06 -2.38 -0.01 2.08 16 31 H 0.03 1.22 5.56 -2.39 -0.01 1.20 16 32 H -0.02 -0.87 7.55 -2.39 -0.02 -0.89 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.06 2.35 6.58 -2.39 -0.02 2.34 16 35 H 0.04 1.10 7.99 -2.39 -0.02 1.08 16 36 H 0.14 1.87 6.01 -2.39 -0.01 1.86 16 37 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.29 6.67 -2.39 -0.02 1.27 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -74.64 349.16 3.85 -70.80 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.97 Total: 9.07 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 6.45 Total: -7.06 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -5.46 Total: -119.07 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Total: -74.64 3.85 -70.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893311049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.955 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds