Wall clock time and date at job start Fri Apr 10 2020 19:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38070 * 119.57290 * 2 1 4 4 C 1.38839 * 119.32605 * 179.97438 * 3 2 1 5 5 C 1.38339 * 118.50672 * 359.75161 * 4 3 2 6 6 C 1.39098 * 119.09877 * 0.51650 * 5 4 3 7 7 N 1.39005 * 119.70719 * 179.74858 * 6 5 4 8 8 C 1.46498 * 119.99761 * 359.72347 * 7 6 5 9 9 C 1.53002 * 109.47224 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47515 * 180.02562 * 9 8 7 11 11 C 1.46895 * 111.00119 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.47270 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.47154 * 54.99975 * 12 11 10 14 14 C 1.47200 * 109.47451 * 295.00037 * 12 11 10 15 15 N 9.09256 * 121.07607 * 16.63341 * 4 1 2 16 16 C 1.52996 * 109.47347 * 174.99819 * 12 11 10 17 17 C 1.50702 * 109.47159 * 185.00014 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 N 1.31939 * 119.57237 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.47031 * 269.97582 * 1 2 3 27 27 H 1.09004 * 109.46997 * 29.97672 * 1 2 3 28 28 H 1.08999 * 109.47421 * 149.96933 * 1 2 3 29 29 H 1.08000 * 120.33822 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.74575 * 180.02562 * 4 3 2 31 31 H 1.07995 * 120.45325 * 180.25800 * 5 4 3 32 32 H 0.97001 * 120.00078 * 179.72818 * 7 6 5 33 33 H 1.09004 * 109.47677 * 60.00079 * 8 7 6 34 34 H 1.08996 * 109.47615 * 299.99888 * 8 7 6 35 35 H 1.09002 * 109.47245 * 59.99749 * 9 8 7 36 36 H 1.08996 * 109.47056 * 300.00023 * 9 8 7 37 37 H 1.00905 * 110.99468 * 303.95636 * 10 9 8 38 38 H 1.08998 * 109.47324 * 59.99878 * 11 10 9 39 39 H 1.09002 * 109.47421 * 300.00055 * 11 10 9 40 40 H 1.09004 * 109.47066 * 65.00217 * 16 12 11 41 41 H 1.08994 * 109.47405 * 305.00047 * 16 12 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1949 0.0005 5 6 4.2318 -0.0236 0.0063 6 6 3.4816 -1.1949 0.0004 7 7 4.1267 -2.4262 0.0009 8 6 5.5905 -2.4862 0.0014 9 6 6.0411 -3.9483 0.0011 10 7 7.5088 -4.0085 0.0022 11 6 7.9787 -5.4003 0.0026 12 6 9.5085 -5.4222 0.0032 13 1 9.8799 -4.8378 0.8451 14 6 10.0080 -4.8429 -1.2545 15 7 10.3926 -4.3944 -2.2312 16 6 9.9979 -6.8662 0.1293 17 6 11.4997 -6.8786 0.2534 18 1 12.0501 -5.9494 0.2436 19 6 12.1707 -8.0759 0.3856 20 7 11.5005 -9.2074 0.3978 21 14 14.0316 -8.0908 0.5470 22 1 14.4046 -8.0085 1.9821 23 1 14.5687 -9.3480 -0.0326 24 1 14.6009 -6.9277 -0.1799 25 7 2.1581 -1.1475 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8897 -0.5143 29 1 1.6470 2.1353 -0.0004 30 1 4.1329 2.1207 0.0010 31 1 5.3109 -0.0650 0.0111 32 1 3.6077 -3.2457 0.0007 33 1 5.9743 -1.9875 0.8914 34 1 5.9749 -1.9878 -0.8885 35 1 5.6573 -4.4467 -0.8891 36 1 5.6567 -4.4471 0.8908 37 1 7.8922 -3.4972 -0.7787 38 1 7.6087 -5.9089 -0.8876 39 1 7.6074 -5.9089 0.8923 40 1 9.7018 -7.4289 -0.7561 41 1 9.5564 -7.3234 1.0148 42 1 11.9725 -10.0497 0.4905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905602299.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:37 Heat of formation + Delta-G solvation = 48.470359 kcal Electronic energy + Delta-G solvation = -20796.554687 eV Core-core repulsion = 17582.823451 eV Total energy + Delta-G solvation = -3213.731236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.46251 -37.86109 -36.62185 -34.99813 -33.64122 -32.93283 -32.20006 -31.14690 -28.44224 -27.32303 -25.98837 -23.27735 -23.04784 -22.42158 -21.82303 -21.27897 -17.81556 -16.88866 -16.78540 -16.59858 -15.98378 -15.88418 -15.15136 -15.05740 -14.67805 -14.47059 -14.00902 -13.85054 -13.30398 -13.22379 -13.17637 -12.77238 -12.65263 -12.49051 -12.32196 -12.04835 -11.99532 -11.68169 -11.56748 -11.28238 -11.07501 -10.77019 -10.56994 -10.42883 -10.31284 -9.74433 -9.65289 -9.60050 -9.27569 -8.53315 -8.48027 -7.91251 -6.12814 -4.16107 1.05882 1.26586 2.78869 3.27276 3.34272 3.38588 3.47393 3.53011 3.68155 4.18152 4.29193 4.39785 4.56237 4.64037 4.73295 4.84185 4.89119 5.01794 5.09788 5.22967 5.25282 5.29850 5.34732 5.37804 5.41046 5.58991 5.64197 5.71015 5.74188 5.86921 6.05683 6.09692 6.25504 6.34982 6.47484 6.79038 6.89776 7.24805 7.34145 7.38996 7.47975 7.82022 7.99151 8.19066 8.33555 8.88363 9.49552 10.98015 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.042910 B = 0.002078 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.379435 B =13473.345074 C =13812.442152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.174 3.826 3 C -0.239 4.239 4 C -0.031 4.031 5 C -0.245 4.245 6 C 0.410 3.590 7 N -0.723 5.723 8 C 0.128 3.872 9 C 0.048 3.952 10 N -0.688 5.688 11 C 0.069 3.931 12 C 0.008 3.992 13 H 0.112 0.888 14 C 0.239 3.761 15 N -0.476 5.476 16 C 0.032 3.968 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.891 5.891 21 Si 0.892 3.108 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.274 1.274 25 N -0.548 5.548 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.340 0.660 38 H 0.037 0.963 39 H 0.094 0.906 40 H 0.024 0.976 41 H 0.040 0.960 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.400 17.257 1.698 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.036 3.964 3 C -0.262 4.262 4 C -0.057 4.057 5 C -0.270 4.270 6 C 0.174 3.826 7 N -0.356 5.356 8 C 0.003 3.997 9 C -0.081 4.081 10 N -0.319 5.319 11 C -0.061 4.061 12 C -0.014 4.014 13 H 0.130 0.870 14 C -0.078 4.078 15 N -0.153 5.153 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.720 3.280 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.199 1.199 25 N -0.267 5.267 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.240 0.760 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.158 0.842 38 H 0.055 0.945 39 H 0.112 0.888 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.976 17.036 0.915 26.269 hybrid contribution 1.186 -0.155 -0.469 1.284 sum -18.790 16.880 0.446 25.263 Atomic orbital electron populations 1.20726 0.89058 1.03334 1.03037 1.20893 0.96315 0.87498 0.91732 1.21599 0.94832 0.98822 1.10942 1.21311 0.94250 0.97579 0.92535 1.21425 1.00981 0.91975 1.12653 1.18269 0.88108 0.86255 0.89957 1.44389 1.05803 1.04952 1.80463 1.21329 0.78509 0.97613 1.02200 1.22027 0.89349 0.95032 1.01736 1.60461 1.06340 1.14928 1.50195 1.22097 0.94198 0.87737 1.02070 1.19333 0.92505 1.01260 0.88317 0.86977 1.29560 0.92288 0.91463 0.94454 1.81278 1.09732 1.11974 1.12300 1.19170 0.96638 0.86124 0.98720 1.21139 0.91568 0.92826 1.51003 0.92463 1.24962 0.98542 0.95587 0.94934 1.69938 1.35716 0.97553 1.49769 0.86576 0.85480 0.77569 0.78366 1.20419 1.21165 1.19884 1.66936 1.07677 1.30325 1.21737 0.90393 0.90688 0.90594 0.85371 0.85074 0.85018 0.76012 0.90636 0.92059 0.94485 0.89852 0.84204 0.94457 0.88791 0.95722 0.94140 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.17 36.01 0.37 -0.32 16 2 C 0.17 1.70 6.78 -82.61 -0.56 1.14 16 3 C -0.24 -2.04 9.73 -39.42 -0.38 -2.43 16 4 C -0.03 -0.27 10.17 -39.32 -0.40 -0.67 16 5 C -0.25 -2.44 9.33 -39.22 -0.37 -2.80 16 6 C 0.41 4.59 7.65 -155.01 -1.19 3.40 16 7 N -0.72 -7.02 5.73 -60.42 -0.35 -7.37 16 8 C 0.13 1.15 5.15 -4.04 -0.02 1.13 16 9 C 0.05 0.46 5.80 -3.82 -0.02 0.44 16 10 N -0.69 -8.10 6.50 -113.78 -0.74 -8.84 16 11 C 0.07 0.94 5.12 -3.83 -0.02 0.92 16 12 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 13 H 0.11 1.88 8.14 -51.92 -0.42 1.46 16 14 C 0.24 4.66 13.00 -20.58 -0.27 4.40 16 15 N -0.48 -10.10 18.57 42.37 0.79 -9.31 16 16 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 17 C -0.53 -13.82 8.60 -34.44 -0.30 -14.12 16 18 H 0.06 1.49 7.59 -52.49 -0.40 1.10 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.25 13.29 55.43 0.74 -24.52 16 21 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 N -0.55 -6.43 10.30 -8.67 -0.09 -6.52 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.13 1.15 6.71 -52.49 -0.35 0.80 16 32 H 0.40 3.67 8.60 -40.82 -0.35 3.32 16 33 H 0.08 0.69 7.92 -51.93 -0.41 0.28 16 34 H 0.06 0.55 7.94 -51.93 -0.41 0.14 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.34 4.15 7.81 -39.29 -0.31 3.85 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -30.76 361.37 -9.26 -40.02 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.44 Total: 1.78 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.60 Total: -6.79 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.35 Total: -56.56 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.76 -9.26 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905602299.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.490 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds