Wall clock time and date at job start Fri Apr 10 2020 19:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 120.00450 * 2 1 4 4 C 1.39175 * 120.00068 * 180.02562 * 2 1 3 5 5 C 1.39501 * 120.86136 * 359.97438 * 4 2 1 6 6 C 1.37875 * 119.06342 * 180.02562 * 5 4 2 7 7 N 1.32011 * 120.84765 * 359.97438 * 6 5 4 8 8 C 1.31977 * 121.90672 * 0.02597 * 7 6 5 9 9 C 1.50704 * 119.57866 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47086 * 274.99822 * 9 8 7 11 11 C 1.46904 * 110.99779 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.46858 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47753 * 305.00128 * 12 11 10 14 14 C 1.47204 * 109.47042 * 64.99895 * 12 11 10 15 15 N 8.67355 * 132.82548 * 143.14439 * 2 1 3 16 16 C 1.52996 * 109.47153 * 184.99851 * 12 11 10 17 17 C 1.50702 * 109.47159 * 175.00123 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.37914 * 120.84682 * 0.26665 * 8 7 6 26 26 H 1.08993 * 109.47248 * 269.99941 * 1 2 3 27 27 H 1.09001 * 109.47030 * 30.00473 * 1 2 3 28 28 H 1.09001 * 109.47098 * 150.00090 * 1 2 3 29 29 H 1.08999 * 109.47135 * 270.00346 * 3 2 1 30 30 H 1.09005 * 109.46999 * 29.99682 * 3 2 1 31 31 H 1.09002 * 109.47421 * 149.99872 * 3 2 1 32 32 H 1.07993 * 120.46536 * 0.02562 * 5 4 2 33 33 H 1.08001 * 119.57689 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.47324 * 154.99641 * 9 8 7 35 35 H 1.09004 * 109.47052 * 34.99800 * 9 8 7 36 36 H 1.00897 * 111.00127 * 56.04185 * 10 9 8 37 37 H 1.08997 * 109.46933 * 59.99775 * 11 10 9 38 38 H 1.08996 * 109.47325 * 299.99917 * 11 10 9 39 39 H 1.09004 * 109.47066 * 55.00326 * 16 12 11 40 40 H 1.08994 * 109.47405 * 295.00156 * 16 12 11 41 41 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.47147 * 179.72950 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1608 -1.2053 -0.0005 5 6 1.4816 -2.4238 -0.0005 6 6 2.2081 -3.5956 -0.0006 7 7 3.5280 -3.5736 -0.0011 8 6 4.2069 -2.4419 -0.0011 9 6 5.7135 -2.4781 -0.0011 10 7 6.2001 -2.6105 1.3787 11 6 7.6681 -2.6498 1.4176 12 6 8.1363 -2.7872 2.8677 13 1 7.7070 -1.9835 3.4659 14 6 7.6975 -4.0860 3.4039 15 7 7.3610 -5.0901 3.8156 16 6 9.6630 -2.7030 2.9209 17 6 10.1170 -2.7150 4.3578 18 1 9.3894 -2.7769 5.1536 19 6 11.4617 -2.6532 4.6565 20 7 11.8582 -2.6691 5.9104 21 14 12.7201 -2.5467 3.2802 22 1 12.9802 -1.1209 2.9565 23 1 13.9841 -3.1943 3.7141 24 1 12.1966 -3.2402 2.0760 25 6 3.5552 -1.2264 0.0050 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 2.3792 1.5833 -1.0277 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5139 32 1 0.4020 -2.4488 -0.0006 33 1 1.6907 -4.5436 -0.0001 34 1 6.0992 -1.5557 -0.4354 35 1 6.0565 -3.3284 -0.5905 36 1 5.8049 -3.4245 1.8249 37 1 8.0676 -1.7289 0.9929 38 1 8.0243 -3.5015 0.8382 39 1 9.9928 -1.7803 2.4433 40 1 10.0925 -3.5569 2.3971 41 1 12.8041 -2.6252 6.1204 42 1 4.1168 -0.3039 0.0093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905850036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:40 Heat of formation + Delta-G solvation = 66.681515 kcal Electronic energy + Delta-G solvation = -21495.094435 eV Core-core repulsion = 18282.152894 eV Total energy + Delta-G solvation = -3212.941541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.47537 -37.69935 -37.09962 -35.22312 -33.66037 -32.26223 -31.33851 -31.01119 -28.86317 -27.40532 -25.79763 -24.83084 -22.77402 -22.54753 -21.45886 -20.65339 -17.67317 -16.99585 -16.84188 -16.68291 -15.86602 -15.56700 -15.33942 -14.97431 -14.70680 -14.37498 -14.08892 -13.74698 -13.43435 -13.24528 -13.03980 -13.02779 -12.69298 -12.54832 -12.37403 -12.25158 -12.04286 -11.87767 -11.38375 -11.33964 -11.11569 -10.80450 -10.77006 -10.39676 -9.93473 -9.76948 -9.46204 -9.29801 -9.11849 -8.59288 -8.35767 -7.92399 -6.08136 -4.08560 1.08498 1.42846 2.68304 3.27816 3.36640 3.37797 3.58900 3.63413 3.72683 4.21068 4.40598 4.47332 4.54383 4.59258 4.75743 4.83669 4.86399 4.94207 5.04653 5.16846 5.21818 5.26068 5.26577 5.35163 5.39651 5.47625 5.58324 5.66701 5.68863 5.82374 5.96378 6.03603 6.20849 6.39517 6.50915 6.79369 6.95740 7.00252 7.04087 7.17475 7.39486 7.66548 8.09488 8.39677 8.46304 8.95850 9.51705 11.05063 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.002829 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.152240 B = 9894.224470 C =10296.082838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.629 5.629 3 C 0.089 3.911 4 C 0.246 3.754 5 C -0.255 4.255 6 C 0.140 3.860 7 N -0.522 5.522 8 C 0.173 3.827 9 C 0.108 3.892 10 N -0.684 5.684 11 C 0.065 3.935 12 C 0.018 3.982 13 H 0.116 0.884 14 C 0.237 3.763 15 N -0.466 5.466 16 C -0.004 4.004 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.070 3.930 20 N -0.898 5.898 21 Si 0.878 3.122 22 H -0.274 1.274 23 H -0.288 1.288 24 H -0.264 1.264 25 C -0.226 4.226 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.152 0.848 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.346 0.654 37 H 0.092 0.908 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.024 0.976 41 H 0.264 0.736 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.866 8.503 -17.262 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.341 5.341 3 C -0.054 4.054 4 C 0.136 3.864 5 C -0.281 4.281 6 C -0.017 4.017 7 N -0.235 5.235 8 C 0.036 3.964 9 C -0.022 4.022 10 N -0.316 5.316 11 C -0.065 4.065 12 C -0.004 4.004 13 H 0.134 0.866 14 C -0.080 4.080 15 N -0.143 5.143 16 C -0.043 4.043 17 C -0.565 4.565 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.536 5.536 21 Si 0.705 3.295 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.188 1.188 25 C -0.252 4.252 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.147 0.853 33 H 0.169 0.831 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.164 0.836 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.886 7.070 -16.395 28.245 hybrid contribution 0.484 0.424 -0.912 1.117 sum -21.402 7.495 -17.308 28.527 Atomic orbital electron populations 1.21675 0.79225 1.02785 1.01474 1.46261 1.05251 1.03251 1.79316 1.21720 0.97682 0.84521 1.01447 1.18056 0.91381 0.86049 0.90939 1.21604 1.00863 0.92029 1.13560 1.22408 0.89489 0.97336 0.92445 1.67532 1.08915 1.30063 1.17017 1.20846 0.95926 0.87798 0.91875 1.20792 0.88289 1.02092 0.90995 1.60600 1.07839 1.47619 1.15569 1.22128 0.86526 1.01966 0.95902 1.19053 0.99529 0.87792 0.94039 0.86638 1.29149 0.91553 0.94596 0.92735 1.81056 1.11287 1.12545 1.09410 1.19631 0.87690 0.97805 0.99178 1.21045 0.93257 1.51586 0.90614 0.90788 1.25001 0.98478 0.94335 0.95372 1.69909 1.15918 1.50218 1.17545 0.86809 0.81105 0.78658 0.82937 1.20004 1.21377 1.18841 1.21420 0.92273 0.99817 1.11672 0.93059 0.91327 0.91185 0.93085 0.91278 0.90661 0.85275 0.83100 0.89317 0.93237 0.83593 0.88921 0.94422 0.94668 0.95790 0.92593 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.22 59.84 0.61 1.10 16 2 N -0.63 -5.01 3.39 -187.35 -0.64 -5.65 16 3 C 0.09 0.54 10.22 59.85 0.61 1.15 16 4 C 0.25 2.52 6.58 -83.60 -0.55 1.97 16 5 C -0.26 -2.49 9.27 -39.24 -0.36 -2.86 16 6 C 0.14 1.54 11.17 -17.61 -0.20 1.35 16 7 N -0.52 -7.03 10.27 -9.57 -0.10 -7.13 16 8 C 0.17 2.16 6.29 -82.65 -0.52 1.64 16 9 C 0.11 1.28 5.99 -4.97 -0.03 1.25 16 10 N -0.68 -9.42 6.49 -115.05 -0.75 -10.17 16 11 C 0.06 0.92 5.12 -3.82 -0.02 0.90 16 12 C 0.02 0.32 2.42 -93.41 -0.23 0.10 16 13 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 14 C 0.24 4.93 12.98 -20.75 -0.27 4.66 16 15 N -0.47 -10.62 18.54 42.16 0.78 -9.84 16 16 C 0.00 -0.09 3.49 -27.88 -0.10 -0.18 16 17 C -0.53 -14.34 9.15 -34.44 -0.32 -14.66 16 18 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 21 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 25 C -0.23 -2.50 8.87 -39.25 -0.35 -2.85 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 28 H 0.07 0.34 6.26 -51.93 -0.32 0.01 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.07 0.49 6.25 -51.93 -0.32 0.16 16 32 H 0.13 0.94 6.28 -52.49 -0.33 0.62 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.35 5.37 7.80 -39.29 -0.31 5.06 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.70 7.58 -51.93 -0.39 0.30 16 40 H 0.02 0.53 7.19 -51.93 -0.37 0.15 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.13 1.27 6.27 -52.49 -0.33 0.94 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -33.52 352.97 -7.26 -40.78 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.17 Total: 1.70 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.81 Total: -4.54 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.07 Total: -59.34 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.52 -7.26 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905850036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.458 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds