Wall clock time and date at job start Fri Apr 10 2020 19:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 120.00450 * 2 1 4 4 C 1.39175 * 120.00068 * 180.02562 * 2 1 3 5 5 C 1.39501 * 120.86136 * 359.97438 * 4 2 1 6 6 C 1.37875 * 119.06342 * 180.02562 * 5 4 2 7 7 N 1.32011 * 120.84765 * 359.97438 * 6 5 4 8 8 C 1.31977 * 121.90672 * 0.02597 * 7 6 5 9 9 C 1.50704 * 119.57866 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47086 * 274.99822 * 9 8 7 11 11 C 1.46904 * 110.99779 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.46858 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47753 * 305.00128 * 12 11 10 14 14 C 1.47204 * 109.47042 * 64.99895 * 12 11 10 15 15 N 8.67355 * 132.82548 * 143.14439 * 2 1 3 16 16 C 1.52996 * 109.47153 * 184.99851 * 12 11 10 17 17 C 1.50702 * 109.47159 * 175.00123 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99985 * 180.27663 * 19 17 16 21 21 Si 1.86800 * 119.99777 * 0.28166 * 19 17 16 22 22 H 1.48498 * 109.47109 * 89.99834 * 21 19 17 23 23 H 1.48507 * 109.46754 * 209.99574 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99405 * 21 19 17 25 25 C 1.37914 * 120.84682 * 0.26665 * 8 7 6 26 26 H 1.08993 * 109.47248 * 269.99941 * 1 2 3 27 27 H 1.09001 * 109.47030 * 30.00473 * 1 2 3 28 28 H 1.09001 * 109.47098 * 150.00090 * 1 2 3 29 29 H 1.08999 * 109.47135 * 270.00346 * 3 2 1 30 30 H 1.09005 * 109.46999 * 29.99682 * 3 2 1 31 31 H 1.09002 * 109.47421 * 149.99872 * 3 2 1 32 32 H 1.07993 * 120.46536 * 0.02562 * 5 4 2 33 33 H 1.08001 * 119.57689 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.47324 * 154.99641 * 9 8 7 35 35 H 1.09004 * 109.47052 * 34.99800 * 9 8 7 36 36 H 1.00897 * 111.00127 * 56.04185 * 10 9 8 37 37 H 1.08997 * 109.46933 * 59.99775 * 11 10 9 38 38 H 1.08996 * 109.47325 * 299.99917 * 11 10 9 39 39 H 1.09004 * 109.47066 * 55.00326 * 16 12 11 40 40 H 1.08994 * 109.47405 * 295.00156 * 16 12 11 41 41 H 0.96996 * 119.99730 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.47147 * 179.72950 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1608 -1.2053 -0.0005 5 6 1.4816 -2.4238 -0.0005 6 6 2.2081 -3.5956 -0.0006 7 7 3.5280 -3.5736 -0.0011 8 6 4.2069 -2.4419 -0.0011 9 6 5.7135 -2.4781 -0.0011 10 7 6.2001 -2.6105 1.3787 11 6 7.6681 -2.6498 1.4176 12 6 8.1363 -2.7872 2.8677 13 1 7.7070 -1.9835 3.4659 14 6 7.6975 -4.0860 3.4039 15 7 7.3610 -5.0901 3.8156 16 6 9.6630 -2.7030 2.9209 17 6 10.1170 -2.7150 4.3578 18 1 9.3894 -2.7769 5.1536 19 6 11.4617 -2.6532 4.6565 20 7 11.8582 -2.6691 5.9104 21 14 12.7201 -2.5467 3.2802 22 1 12.9802 -1.1209 2.9565 23 1 13.9841 -3.1943 3.7141 24 1 12.1966 -3.2402 2.0760 25 6 3.5552 -1.2264 0.0050 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 2.3792 1.5833 -1.0277 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5139 32 1 0.4020 -2.4488 -0.0006 33 1 1.6907 -4.5436 -0.0001 34 1 6.0992 -1.5557 -0.4354 35 1 6.0565 -3.3284 -0.5905 36 1 5.8049 -3.4245 1.8249 37 1 8.0676 -1.7289 0.9929 38 1 8.0243 -3.5015 0.8382 39 1 9.9928 -1.7803 2.4433 40 1 10.0925 -3.5569 2.3971 41 1 12.8041 -2.6252 6.1204 42 1 4.1168 -0.3039 0.0093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905850036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:39 Heat of formation + Delta-G solvation = 43.301196 kcal Electronic energy + Delta-G solvation = -21496.108282 eV Core-core repulsion = 18282.152894 eV Total energy + Delta-G solvation = -3213.955388 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23548 -38.95192 -37.93273 -36.54994 -35.40586 -33.86040 -32.21480 -32.01927 -29.59480 -28.70955 -26.68117 -25.77697 -23.79482 -23.54328 -23.21816 -21.41820 -18.94487 -18.41651 -18.21358 -17.59922 -16.89640 -16.49264 -16.19218 -16.05865 -15.64991 -15.38492 -15.18333 -14.90888 -14.71234 -14.53325 -14.28612 -14.09481 -13.90614 -13.57414 -13.42356 -13.21261 -13.10885 -12.97513 -12.82690 -12.52940 -12.40804 -12.11106 -12.07851 -11.65225 -11.58557 -11.43013 -11.27991 -10.71138 -10.30295 -9.94362 -9.39073 -8.55611 -8.23068 -6.28774 0.28816 0.64643 1.44466 1.47685 1.58062 1.93742 1.95865 2.13709 2.43096 2.85158 3.12833 3.24390 3.35256 3.59622 3.79675 4.03275 4.10385 4.25526 4.35711 4.37087 4.42930 4.48172 4.52095 4.58407 4.65157 4.78811 4.80840 4.88814 4.89754 4.91653 4.95738 4.96258 5.11464 5.18141 5.26340 5.48458 5.64874 5.74862 6.00702 6.21487 6.24034 6.28317 6.37718 6.74974 6.81427 7.28553 7.35572 8.94095 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.002829 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.152240 B = 9894.224470 C =10296.082838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.631 5.631 3 C 0.084 3.916 4 C 0.238 3.762 5 C -0.256 4.256 6 C 0.124 3.876 7 N -0.558 5.558 8 C 0.153 3.847 9 C 0.111 3.889 10 N -0.687 5.687 11 C 0.075 3.925 12 C 0.024 3.976 13 H 0.120 0.880 14 C 0.247 3.753 15 N -0.509 5.509 16 C -0.001 4.001 17 C -0.532 4.532 18 H 0.026 0.974 19 C 0.001 3.999 20 N -0.956 5.956 21 Si 0.951 3.049 22 H -0.255 1.255 23 H -0.297 1.297 24 H -0.236 1.236 25 C -0.234 4.234 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.168 0.832 34 H 0.113 0.887 35 H 0.044 0.956 36 H 0.332 0.668 37 H 0.125 0.875 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.264 0.736 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.493 10.319 -20.199 31.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.341 5.341 3 C -0.059 4.059 4 C 0.125 3.875 5 C -0.281 4.281 6 C -0.031 4.031 7 N -0.272 5.272 8 C 0.017 3.983 9 C -0.018 4.018 10 N -0.317 5.317 11 C -0.054 4.054 12 C 0.002 3.998 13 H 0.137 0.863 14 C -0.069 4.069 15 N -0.186 5.186 16 C -0.040 4.040 17 C -0.570 4.570 18 H 0.045 0.955 19 C -0.196 4.196 20 N -0.597 5.597 21 Si 0.774 3.226 22 H -0.179 1.179 23 H -0.224 1.224 24 H -0.159 1.159 25 C -0.260 4.260 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.170 0.830 33 H 0.186 0.814 34 H 0.131 0.869 35 H 0.062 0.938 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.559 8.920 -19.361 31.037 hybrid contribution 0.522 -0.095 0.087 0.537 sum -22.037 8.825 -19.274 30.578 Atomic orbital electron populations 1.21861 0.77765 1.04053 1.02026 1.46549 1.06341 1.03023 1.78228 1.21863 0.97656 0.84122 1.02212 1.18264 0.91499 0.87158 0.90535 1.21837 1.01994 0.91542 1.12704 1.22778 0.89134 0.98739 0.92489 1.67500 1.10164 1.30974 1.18543 1.20986 0.96243 0.88221 0.92869 1.20858 0.88254 1.03021 0.89637 1.60615 1.07436 1.46778 1.16905 1.22069 0.86926 1.03772 0.92677 1.19146 0.97551 0.86237 0.96886 0.86270 1.29831 0.90561 0.94883 0.91668 1.81047 1.12601 1.14079 1.10906 1.19584 0.89777 0.99300 0.95378 1.21419 0.92523 1.50324 0.92696 0.95513 1.26081 1.01237 0.94082 0.98165 1.70098 1.16417 1.52618 1.20536 0.85649 0.77222 0.79850 0.79901 1.17900 1.22353 1.15941 1.21559 0.92924 0.99773 1.11708 0.92796 0.89380 0.90687 0.92162 0.89598 0.91269 0.83022 0.81448 0.86886 0.93754 0.85147 0.85732 0.93999 0.91388 0.95491 0.92681 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.22 127.77 1.31 2.00 16 2 N -0.63 -8.65 3.39 -746.65 -2.53 -11.18 16 3 C 0.08 0.82 10.22 127.77 1.31 2.12 16 4 C 0.24 4.50 6.58 38.57 0.25 4.76 16 5 C -0.26 -4.65 9.27 22.49 0.21 -4.44 16 6 C 0.12 2.68 11.17 84.58 0.94 3.63 16 7 N -0.56 -14.91 10.27 -184.19 -1.89 -16.80 16 8 C 0.15 3.71 6.29 42.46 0.27 3.98 16 9 C 0.11 2.44 5.99 85.56 0.51 2.96 16 10 N -0.69 -17.79 6.49 -517.92 -3.36 -21.15 16 11 C 0.08 1.92 5.12 86.30 0.44 2.36 16 12 C 0.02 0.82 2.42 -12.60 -0.03 0.79 16 13 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 14 C 0.25 10.31 12.98 89.44 1.16 11.47 16 15 N -0.51 -23.65 18.54 20.01 0.37 -23.28 16 16 C 0.00 -0.06 3.49 29.85 0.10 0.05 16 17 C -0.53 -29.13 9.15 25.60 0.23 -28.90 16 18 H 0.03 1.66 7.84 -2.91 -0.02 1.64 16 19 C 0.00 0.04 5.47 84.66 0.46 0.50 16 20 N -0.96 -59.89 13.96 21.45 0.30 -59.59 16 21 Si 0.95 41.70 27.47 68.60 1.88 43.58 16 22 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 23 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 25 C -0.23 -4.85 8.87 22.49 0.20 -4.65 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.09 0.39 8.07 -2.39 -0.02 0.37 16 28 H 0.07 0.54 6.26 -2.39 -0.01 0.53 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.55 8.07 -2.38 -0.02 0.53 16 31 H 0.07 0.76 6.25 -2.39 -0.01 0.75 16 32 H 0.15 1.91 6.28 -2.91 -0.02 1.90 16 33 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.11 1.87 8.04 -2.39 -0.02 1.86 16 35 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.33 10.17 7.80 -89.70 -0.70 9.47 16 37 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 2.40 7.58 -2.38 -0.02 2.38 16 40 H 0.03 1.10 7.19 -2.39 -0.02 1.08 16 41 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.15 2.51 6.27 -2.91 -0.02 2.49 16 Total: -1.00 -75.28 352.97 2.41 -72.87 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.27 Total: 18.93 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 7.37 Total: -3.38 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -7.12 Total: -132.01 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.88 Total: 43.58 kcal Total: -75.28 2.41 -72.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905850036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.168 kcal (2) G-P(sol) polarization free energy of solvation -75.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds