Wall clock time and date at job start Fri Apr 10 2020 19:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 119.99887 * 2 1 4 4 C 1.39164 * 119.99762 * 179.97438 * 2 1 3 5 5 C 1.39501 * 120.86804 * 0.02562 * 4 2 1 6 6 C 1.37873 * 119.06974 * 179.97438 * 5 4 2 7 7 N 1.32018 * 120.84188 * 359.97438 * 6 5 4 8 8 C 1.31979 * 121.90906 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.57547 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.46661 * 274.99898 * 9 8 7 11 11 C 1.46906 * 110.99888 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.46897 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.47317 * 55.00605 * 12 11 10 14 14 C 1.47200 * 109.47506 * 294.99833 * 12 11 10 15 15 N 7.35792 * 144.66979 * 98.80344 * 2 1 3 16 16 C 1.53009 * 109.46984 * 175.00052 * 12 11 10 17 17 C 1.50697 * 109.47152 * 185.00255 * 16 12 11 18 18 H 1.08002 * 120.00031 * 359.97438 * 17 16 12 19 19 C 1.37878 * 119.99823 * 179.97438 * 17 16 12 20 20 N 1.31515 * 119.99842 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00164 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47497 * 89.99265 * 21 19 17 23 23 H 1.48496 * 109.47237 * 210.00062 * 21 19 17 24 24 H 1.48511 * 109.46820 * 329.99546 * 21 19 17 25 25 C 1.37912 * 120.84252 * 0.27467 * 8 7 6 26 26 H 1.08993 * 109.47050 * 270.00492 * 1 2 3 27 27 H 1.08999 * 109.47028 * 30.00293 * 1 2 3 28 28 H 1.09000 * 109.47131 * 149.99762 * 1 2 3 29 29 H 1.09003 * 109.46975 * 239.99642 * 3 2 1 30 30 H 1.08999 * 109.47641 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.47423 * 119.99900 * 3 2 1 32 32 H 1.07998 * 120.46152 * 0.02562 * 5 4 2 33 33 H 1.07997 * 119.57832 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.47155 * 154.99947 * 9 8 7 35 35 H 1.08997 * 109.47111 * 34.99868 * 9 8 7 36 36 H 1.00902 * 111.00533 * 56.04452 * 10 9 8 37 37 H 1.09000 * 109.47033 * 300.00113 * 11 10 9 38 38 H 1.09001 * 109.46544 * 60.00058 * 11 10 9 39 39 H 1.09003 * 109.46685 * 305.00467 * 16 12 11 40 40 H 1.08996 * 109.46802 * 64.99886 * 16 12 11 41 41 H 0.97006 * 119.99579 * 180.02562 * 20 19 17 42 42 H 1.08006 * 120.46167 * 179.71931 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1608 -1.2052 0.0005 5 6 1.4816 -2.4237 0.0005 6 6 2.2081 -3.5956 0.0006 7 7 3.5281 -3.5736 0.0000 8 6 4.2069 -2.4418 0.0000 9 6 5.7136 -2.4781 -0.0012 10 7 6.2011 -2.6111 1.3781 11 6 7.6692 -2.6493 1.4162 12 6 8.1383 -2.7874 2.8659 13 1 7.6691 -3.6612 3.3180 14 6 7.7605 -1.5817 3.6210 15 7 7.4679 -0.6512 4.2049 16 6 9.6592 -2.9524 2.8962 17 6 10.1083 -3.2112 4.3113 18 1 9.3817 -3.2533 5.1093 19 6 11.4467 -3.3941 4.5872 20 7 11.8387 -3.6194 5.8222 21 14 12.7035 -3.3206 3.2071 22 1 13.1822 -1.9240 3.0474 23 1 13.8517 -4.2030 3.5357 24 1 12.0754 -3.7765 1.9409 25 6 3.5552 -1.2264 0.0062 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 2.8242 1.3264 -0.8900 30 1 1.4892 2.0972 -0.0005 31 1 2.8242 1.3265 0.8900 32 1 0.4020 -2.4488 -0.0003 33 1 1.6907 -4.5435 0.0010 34 1 6.0989 -1.5555 -0.4354 35 1 6.0560 -3.3281 -0.5912 36 1 5.8062 -3.4254 1.8244 37 1 8.0257 -3.5003 0.8358 38 1 8.0676 -1.7276 0.9919 39 1 9.9461 -3.7931 2.2645 40 1 10.1308 -2.0422 2.5260 41 1 12.7804 -3.7478 6.0163 42 1 4.1169 -0.3039 0.0107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905850037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:43 Heat of formation + Delta-G solvation = 41.888488 kcal Electronic energy + Delta-G solvation = -21517.992603 eV Core-core repulsion = 18303.975955 eV Total energy + Delta-G solvation = -3214.016648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22714 -38.84133 -37.94275 -36.53919 -35.35739 -33.84024 -32.19470 -32.03979 -29.59696 -28.72524 -26.69688 -25.79236 -23.77251 -23.50940 -23.22071 -21.43775 -18.92801 -18.65368 -18.12553 -17.59273 -16.58079 -16.47212 -16.16094 -15.96884 -15.64263 -15.53901 -15.21409 -14.98469 -14.86828 -14.43649 -14.15597 -14.05695 -13.78879 -13.52898 -13.34910 -13.28339 -13.14547 -13.10032 -12.80798 -12.60760 -12.46675 -12.14278 -11.87210 -11.69307 -11.56666 -11.43439 -11.28173 -10.72158 -10.31119 -9.93546 -9.30774 -8.59672 -8.23145 -6.28832 0.28820 0.63822 1.45193 1.46378 1.57639 2.06175 2.10860 2.13493 2.42865 2.86365 3.13279 3.30178 3.38229 3.63840 3.80521 4.02779 4.13059 4.18803 4.33027 4.35405 4.39381 4.45438 4.53767 4.61707 4.70649 4.71327 4.79551 4.83376 4.84032 4.87932 4.93717 4.94813 5.09476 5.17421 5.27630 5.46962 5.64944 5.75884 6.03281 6.20047 6.27871 6.34888 6.42947 6.78756 6.91937 7.27465 7.35478 8.93944 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.027420 B = 0.002822 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.903307 B = 9918.037465 C =10298.017723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.633 5.633 3 C 0.088 3.912 4 C 0.235 3.765 5 C -0.255 4.255 6 C 0.128 3.872 7 N -0.546 5.546 8 C 0.157 3.843 9 C 0.115 3.885 10 N -0.698 5.698 11 C 0.077 3.923 12 C 0.024 3.976 13 H 0.112 0.888 14 C 0.263 3.737 15 N -0.517 5.517 16 C -0.002 4.002 17 C -0.531 4.531 18 H 0.027 0.973 19 C 0.001 3.999 20 N -0.956 5.956 21 Si 0.950 3.050 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.221 1.221 25 C -0.241 4.241 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.153 0.847 33 H 0.176 0.824 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.347 0.653 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.979 4.105 -20.834 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.343 5.343 3 C -0.054 4.054 4 C 0.123 3.877 5 C -0.280 4.280 6 C -0.028 4.028 7 N -0.260 5.260 8 C 0.021 3.979 9 C -0.014 4.014 10 N -0.330 5.330 11 C -0.053 4.053 12 C 0.002 3.998 13 H 0.130 0.870 14 C -0.053 4.053 15 N -0.195 5.195 16 C -0.041 4.041 17 C -0.569 4.569 18 H 0.045 0.955 19 C -0.196 4.196 20 N -0.597 5.597 21 Si 0.773 3.227 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.143 1.143 25 C -0.266 4.266 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.171 0.829 33 H 0.193 0.807 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.983 5.575 -19.740 30.805 hybrid contribution 0.591 -0.276 0.059 0.655 sum -22.392 5.298 -19.681 30.279 Atomic orbital electron populations 1.21907 0.77528 1.04240 1.02001 1.46552 1.06440 1.02983 1.78329 1.21780 0.97718 0.84654 1.01270 1.18277 0.91366 0.87279 0.90771 1.21867 1.02070 0.91436 1.12666 1.22865 0.89148 0.98718 0.92043 1.67525 1.09980 1.30228 1.18266 1.20956 0.96306 0.88073 0.92603 1.20756 0.88044 1.02715 0.89872 1.60456 1.07470 1.47981 1.17067 1.21984 0.86992 1.03518 0.92819 1.19073 0.98072 0.88966 0.93661 0.86995 1.29474 0.90013 0.94049 0.91752 1.81013 1.12647 1.14084 1.11742 1.19593 0.89963 0.98784 0.95779 1.21418 0.93012 1.48530 0.93961 0.95485 1.26076 1.01196 0.94075 0.98220 1.70100 1.16785 1.51032 1.21740 0.85672 0.77979 0.78243 0.80855 1.20179 1.21644 1.14337 1.21493 0.93102 0.99735 1.12307 0.92939 0.89294 0.90382 0.92238 0.88290 0.93593 0.82910 0.80732 0.88763 0.92358 0.83470 0.90274 0.89678 0.91591 0.95361 0.92687 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.19 127.77 1.30 2.07 16 2 N -0.63 -9.77 3.39 -746.65 -2.53 -12.30 16 3 C 0.09 1.12 9.44 127.77 1.21 2.32 16 4 C 0.23 4.74 6.58 38.58 0.25 5.00 16 5 C -0.26 -4.56 9.27 22.49 0.21 -4.35 16 6 C 0.13 2.53 11.17 84.58 0.94 3.48 16 7 N -0.55 -13.41 10.27 -184.19 -1.89 -15.31 16 8 C 0.16 3.79 6.29 42.46 0.27 4.05 16 9 C 0.12 2.51 5.99 85.56 0.51 3.02 16 10 N -0.70 -17.64 6.19 -517.92 -3.21 -20.85 16 11 C 0.08 1.93 5.05 86.30 0.44 2.36 16 12 C 0.02 0.83 2.36 -12.60 -0.03 0.80 16 13 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 14 C 0.26 11.07 13.67 89.43 1.22 12.29 16 15 N -0.52 -24.31 18.54 20.02 0.37 -23.94 16 16 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 17 C -0.53 -29.11 9.15 25.60 0.23 -28.87 16 18 H 0.03 1.68 7.84 -2.91 -0.02 1.66 16 19 C 0.00 0.04 5.47 84.65 0.46 0.50 16 20 N -0.96 -59.96 13.96 21.45 0.30 -59.67 16 21 Si 0.95 41.78 27.47 68.60 1.88 43.66 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.22 -8.22 6.54 99.48 0.65 -7.57 16 25 C -0.24 -5.49 8.99 22.49 0.20 -5.28 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.09 0.45 7.92 -2.39 -0.02 0.43 16 28 H 0.08 0.58 6.26 -2.39 -0.01 0.56 16 29 H 0.06 0.72 8.00 -2.39 -0.02 0.70 16 30 H 0.10 0.74 7.79 -2.39 -0.02 0.72 16 31 H 0.05 0.71 7.98 -2.39 -0.02 0.69 16 32 H 0.15 1.85 6.28 -2.91 -0.02 1.83 16 33 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.09 1.83 8.04 -2.39 -0.02 1.81 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.35 8.92 8.72 -89.69 -0.78 8.13 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 2.38 7.20 -2.39 -0.02 2.36 16 40 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 41 H 0.26 15.53 8.31 -92.70 -0.77 14.75 16 42 H 0.13 2.83 6.90 -2.91 -0.02 2.81 16 Total: -1.00 -75.55 355.25 2.43 -73.12 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.18 Total: 17.86 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 7.33 Total: -2.58 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -6.96 Total: -132.06 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.66 kcal Total: -75.55 2.43 -73.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905850037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.006 kcal (2) G-P(sol) polarization free energy of solvation -75.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds