Wall clock time and date at job start Fri Apr 10 2020 19:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 119.99977 * 2 1 4 4 H 1.48509 * 109.47134 * 270.00352 * 3 2 1 5 5 H 1.48501 * 109.47361 * 29.99874 * 3 2 1 6 6 H 1.48492 * 109.47337 * 150.00513 * 3 2 1 7 7 C 1.37875 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00376 * 173.39485 * 7 2 1 9 9 C 1.50705 * 119.99788 * 353.39167 * 7 2 1 10 10 C 1.53007 * 115.54888 * 84.94695 * 9 7 2 11 11 N 1.46903 * 109.47179 * 39.52887 * 10 9 7 12 12 C 1.46899 * 110.99842 * 185.45657 * 11 10 9 13 13 H 1.08992 * 109.47257 * 34.99648 * 12 11 10 14 14 C 1.53003 * 109.47174 * 155.00245 * 12 11 10 15 15 C 1.52997 * 109.46851 * 294.99747 * 14 12 11 16 16 C 1.53001 * 109.47334 * 180.02562 * 15 14 12 17 17 N 1.46894 * 109.47220 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.46764 * 274.99920 * 12 11 10 19 19 C 1.38238 * 120.00120 * 319.72677 * 18 12 11 20 20 C 1.38231 * 119.99954 * 179.81049 * 19 18 12 21 21 C 1.38237 * 120.00153 * 0.39997 * 20 19 18 22 22 C 1.38230 * 119.99913 * 359.85289 * 21 20 19 23 23 C 1.38226 * 120.00053 * 140.00226 * 18 12 11 24 24 C 1.52998 * 117.52036 * 230.64190 * 9 7 2 25 25 C 1.52992 * 117.50193 * 299.27336 * 9 7 2 26 26 H 0.96999 * 119.99583 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46640 * 279.53305 * 10 9 7 28 28 H 1.08992 * 109.47031 * 159.53002 * 10 9 7 29 29 H 1.00901 * 110.99649 * 61.49738 * 11 10 9 30 30 H 1.08995 * 109.47035 * 54.99330 * 14 12 11 31 31 H 1.08997 * 109.46840 * 174.99768 * 14 12 11 32 32 H 1.09006 * 109.47384 * 299.99793 * 15 14 12 33 33 H 1.09006 * 109.47315 * 59.99728 * 15 14 12 34 34 H 1.09006 * 109.46542 * 300.00096 * 16 15 14 35 35 H 1.09005 * 109.46794 * 59.99448 * 16 15 14 36 36 H 1.00909 * 110.99684 * 179.97438 * 17 16 15 37 37 H 1.00905 * 110.99852 * 303.94485 * 17 16 15 38 38 H 1.08002 * 119.99979 * 359.97438 * 19 18 12 39 39 H 1.08005 * 119.99981 * 180.23086 * 20 19 18 40 40 H 1.07999 * 119.99775 * 179.83594 * 21 20 19 41 41 H 1.08001 * 120.00229 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00013 * 359.97438 * 23 18 12 43 43 H 1.09003 * 117.50229 * 214.97726 * 24 9 7 44 44 H 1.09006 * 117.49430 * 359.97438 * 24 9 7 45 45 H 1.09005 * 117.49814 * 359.97438 * 25 9 7 46 46 H 1.09004 * 117.49945 * 144.97409 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0792 -1.1972 -0.1081 9 6 1.2585 -2.4949 0.1491 10 6 0.6899 -3.0820 -1.1444 11 7 1.6544 -2.8888 -2.2354 12 6 1.0901 -3.3237 -3.5201 13 1 0.0230 -3.1030 -3.5415 14 6 1.7877 -2.5807 -4.6613 15 6 1.4718 -1.0868 -4.5654 16 6 2.1688 -0.3438 -5.7069 17 7 1.8660 1.0906 -5.6146 18 6 1.2996 -4.8070 -3.6842 19 6 2.4928 -5.3842 -3.2916 20 6 2.6835 -6.7454 -3.4386 21 6 1.6842 -7.5282 -3.9858 22 6 0.4930 -6.9503 -4.3832 23 6 0.3009 -5.5896 -4.2327 24 6 1.7558 -3.4769 1.2117 25 6 0.4540 -2.7042 1.4335 26 1 -0.4849 0.8401 0.0004 27 1 -0.2445 -2.5782 -1.3920 28 1 0.5035 -4.1472 -1.0086 29 1 2.5212 -3.3671 -2.0406 30 1 2.8649 -2.7297 -4.5869 31 1 1.4326 -2.9667 -5.6167 32 1 0.3945 -0.9377 -4.6398 33 1 1.8269 -0.7008 -3.6099 34 1 3.2461 -0.4929 -5.6330 35 1 1.8133 -0.7299 -6.6623 36 1 2.3157 1.6037 -6.3580 37 1 0.8697 1.2506 -5.6156 38 1 3.2751 -4.7720 -2.8676 39 1 3.6143 -7.1969 -3.1284 40 1 1.8342 -8.5913 -4.1031 41 1 -0.2876 -7.5618 -4.8112 42 1 -0.6298 -5.1381 -4.5431 43 1 1.6779 -4.5411 0.9894 44 1 2.6231 -3.1823 1.8026 45 1 0.4647 -1.9012 2.1705 46 1 -0.4807 -3.2598 1.3570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925658731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:48 Heat of formation + Delta-G solvation = 41.133119 kcal Electronic energy + Delta-G solvation = -23390.127040 eV Core-core repulsion = 20279.617980 eV Total energy + Delta-G solvation = -3110.509060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.48630 -37.04466 -36.05579 -34.56294 -31.70161 -31.18654 -30.72497 -30.37061 -26.61202 -25.26505 -23.84308 -22.95631 -22.24253 -21.02170 -20.81402 -19.89652 -18.87335 -16.98893 -15.96365 -15.70018 -15.23394 -15.01066 -14.69668 -14.54216 -14.28166 -14.02116 -13.65178 -13.33297 -13.20739 -12.99319 -12.65225 -12.49853 -11.99562 -11.78405 -11.50424 -11.28284 -11.24707 -10.81764 -10.76831 -10.61624 -10.55555 -10.44683 -10.33759 -10.15592 -10.02309 -9.35337 -8.81264 -8.73591 -8.51916 -8.45372 -8.19489 -7.93201 -7.38733 -5.80900 -3.80947 1.48901 1.51203 3.48180 3.54711 3.57525 3.91084 4.62062 4.70429 4.88613 4.97543 5.04766 5.08906 5.22813 5.37228 5.44420 5.47085 5.52581 5.63119 5.64106 5.69419 5.79364 5.97818 6.06420 6.11216 6.18144 6.23350 6.27256 6.32848 6.41767 6.57692 6.60256 6.62438 6.68458 6.69667 6.78002 6.83480 7.03404 7.12202 7.13234 7.18997 7.39113 7.55274 7.56877 7.61887 8.10332 8.11167 8.31102 8.67553 9.14621 9.81926 11.29495 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.006243 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.961225 B = 4484.304588 C = 6282.243347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.077 3.923 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.462 4.462 8 H 0.055 0.945 9 C 0.052 3.948 10 C 0.111 3.889 11 N -0.641 5.641 12 C 0.123 3.877 13 H 0.079 0.921 14 C -0.091 4.091 15 C -0.112 4.112 16 C 0.064 3.936 17 N -0.849 5.849 18 C -0.098 4.098 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.220 4.220 25 C -0.159 4.159 26 H 0.254 0.746 27 H 0.068 0.932 28 H -0.008 1.008 29 H 0.331 0.669 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.014 0.986 36 H 0.334 0.666 37 H 0.339 0.661 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -9.452 -11.510 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.125 4.125 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.500 4.500 8 H 0.073 0.927 9 C 0.051 3.949 10 C -0.018 4.018 11 N -0.270 5.270 12 C 0.011 3.989 13 H 0.098 0.902 14 C -0.130 4.130 15 C -0.150 4.150 16 C -0.067 4.067 17 N -0.378 5.378 18 C -0.100 4.100 19 C -0.133 4.133 20 C -0.136 4.136 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.257 4.257 25 C -0.197 4.197 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.010 0.990 29 H 0.151 0.849 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.672 -8.667 -10.880 14.011 hybrid contribution -0.129 -0.318 -0.793 0.864 sum 1.543 -8.986 -11.673 14.812 Atomic orbital electron populations 1.70012 1.05794 1.25818 1.50529 1.24798 0.94578 0.98339 0.94798 0.86775 0.79716 0.84176 0.78413 1.20048 1.21857 1.20413 1.20102 0.92399 0.88225 1.49253 0.92671 1.18887 0.96992 0.93726 0.85317 1.21477 0.95065 0.93783 0.91454 1.60486 1.06132 1.60419 0.99957 1.20706 0.99653 0.86309 0.92193 0.90235 1.21415 1.00378 0.95201 0.95999 1.21492 0.99512 0.93632 1.00353 1.21840 1.00537 0.87592 0.96695 1.58632 1.16040 1.09326 1.53826 1.21051 0.93811 0.98209 0.96916 1.21026 0.97362 0.94950 0.99960 1.21101 0.99015 0.93973 0.99513 1.21064 0.94186 0.99464 1.00341 1.21098 0.97367 0.95065 1.00474 1.21079 0.98956 0.93747 0.99812 1.23079 0.98477 0.95417 1.08727 1.22473 0.91960 1.01112 1.04148 0.93603 0.91346 0.98989 0.84938 0.92102 0.93121 0.93052 0.88092 0.91524 0.96807 0.85484 0.84834 0.85812 0.86382 0.86632 0.86566 0.86381 0.92275 0.90672 0.90155 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.11 12.94 55.43 0.72 -24.39 16 2 C 0.08 2.11 5.39 -17.82 -0.10 2.01 16 3 Si 0.88 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.46 -12.37 8.15 -34.44 -0.28 -12.65 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.05 1.25 1.74 -155.66 -0.27 0.98 16 10 C 0.11 2.44 5.59 -3.82 -0.02 2.42 16 11 N -0.64 -12.35 4.97 -107.95 -0.54 -12.89 16 12 C 0.12 1.98 2.22 -68.86 -0.15 1.82 16 13 H 0.08 1.36 7.57 -51.93 -0.39 0.97 16 14 C -0.09 -1.34 4.87 -26.73 -0.13 -1.47 16 15 C -0.11 -1.82 5.36 -26.73 -0.14 -1.96 16 16 C 0.06 0.89 6.79 -3.83 -0.03 0.87 16 17 N -0.85 -11.95 9.62 -10.37 -0.10 -12.05 16 18 C -0.10 -1.44 4.78 -104.62 -0.50 -1.94 16 19 C -0.11 -1.61 9.11 -39.58 -0.36 -1.98 16 20 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 21 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 22 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 23 C -0.12 -1.58 9.67 -39.58 -0.38 -1.97 16 24 C -0.22 -4.85 9.88 -26.73 -0.26 -5.11 16 25 C -0.16 -3.79 9.48 -26.74 -0.25 -4.04 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.07 1.66 7.92 -51.93 -0.41 1.25 16 28 H -0.01 -0.17 7.89 -51.93 -0.41 -0.58 16 29 H 0.33 6.18 6.42 -39.29 -0.25 5.93 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.10 2.09 7.75 -51.93 -0.40 1.69 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.33 3.80 9.08 -39.29 -0.36 3.45 16 37 H 0.34 4.47 8.99 -39.29 -0.35 4.11 16 38 H 0.12 1.71 6.53 -52.49 -0.34 1.37 16 39 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.44 8.04 -52.49 -0.42 1.02 16 43 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 44 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 45 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 46 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -29.00 375.28 -11.32 -40.32 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -7.96 Total: 15.29 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -4.08 Total: -28.72 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.08 Total: -49.33 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.00 -11.32 -40.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925658731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.458 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds