Wall clock time and date at job start Fri Apr 10 2020 19:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 119.99977 * 2 1 4 4 H 1.48509 * 109.47134 * 270.00352 * 3 2 1 5 5 H 1.48501 * 109.47361 * 29.99874 * 3 2 1 6 6 H 1.48492 * 109.47337 * 150.00513 * 3 2 1 7 7 C 1.37875 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00376 * 173.39485 * 7 2 1 9 9 C 1.50705 * 119.99788 * 353.39167 * 7 2 1 10 10 C 1.53007 * 115.54888 * 84.94695 * 9 7 2 11 11 N 1.46903 * 109.47179 * 39.52887 * 10 9 7 12 12 C 1.46899 * 110.99842 * 185.45657 * 11 10 9 13 13 H 1.08992 * 109.47257 * 34.99648 * 12 11 10 14 14 C 1.53003 * 109.47174 * 155.00245 * 12 11 10 15 15 C 1.52997 * 109.46851 * 294.99747 * 14 12 11 16 16 C 1.53001 * 109.47334 * 180.02562 * 15 14 12 17 17 N 1.46894 * 109.47220 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.46764 * 274.99920 * 12 11 10 19 19 C 1.38238 * 120.00120 * 319.72677 * 18 12 11 20 20 C 1.38231 * 119.99954 * 179.81049 * 19 18 12 21 21 C 1.38237 * 120.00153 * 0.39997 * 20 19 18 22 22 C 1.38230 * 119.99913 * 359.85289 * 21 20 19 23 23 C 1.38226 * 120.00053 * 140.00226 * 18 12 11 24 24 C 1.52998 * 117.52036 * 230.64190 * 9 7 2 25 25 C 1.52992 * 117.50193 * 299.27336 * 9 7 2 26 26 H 0.96999 * 119.99583 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46640 * 279.53305 * 10 9 7 28 28 H 1.08992 * 109.47031 * 159.53002 * 10 9 7 29 29 H 1.00901 * 110.99649 * 61.49738 * 11 10 9 30 30 H 1.08995 * 109.47035 * 54.99330 * 14 12 11 31 31 H 1.08997 * 109.46840 * 174.99768 * 14 12 11 32 32 H 1.09006 * 109.47384 * 299.99793 * 15 14 12 33 33 H 1.09006 * 109.47315 * 59.99728 * 15 14 12 34 34 H 1.09006 * 109.46542 * 300.00096 * 16 15 14 35 35 H 1.09005 * 109.46794 * 59.99448 * 16 15 14 36 36 H 1.00909 * 110.99684 * 179.97438 * 17 16 15 37 37 H 1.00905 * 110.99852 * 303.94485 * 17 16 15 38 38 H 1.08002 * 119.99979 * 359.97438 * 19 18 12 39 39 H 1.08005 * 119.99981 * 180.23086 * 20 19 18 40 40 H 1.07999 * 119.99775 * 179.83594 * 21 20 19 41 41 H 1.08001 * 120.00229 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00013 * 359.97438 * 23 18 12 43 43 H 1.09003 * 117.50229 * 214.97726 * 24 9 7 44 44 H 1.09006 * 117.49430 * 359.97438 * 24 9 7 45 45 H 1.09005 * 117.49814 * 359.97438 * 25 9 7 46 46 H 1.09004 * 117.49945 * 144.97409 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0792 -1.1972 -0.1081 9 6 1.2585 -2.4949 0.1491 10 6 0.6899 -3.0820 -1.1444 11 7 1.6544 -2.8888 -2.2354 12 6 1.0901 -3.3237 -3.5201 13 1 0.0230 -3.1030 -3.5415 14 6 1.7877 -2.5807 -4.6613 15 6 1.4718 -1.0868 -4.5654 16 6 2.1688 -0.3438 -5.7069 17 7 1.8660 1.0906 -5.6146 18 6 1.2996 -4.8070 -3.6842 19 6 2.4928 -5.3842 -3.2916 20 6 2.6835 -6.7454 -3.4386 21 6 1.6842 -7.5282 -3.9858 22 6 0.4930 -6.9503 -4.3832 23 6 0.3009 -5.5896 -4.2327 24 6 1.7558 -3.4769 1.2117 25 6 0.4540 -2.7042 1.4335 26 1 -0.4849 0.8401 0.0004 27 1 -0.2445 -2.5782 -1.3920 28 1 0.5035 -4.1472 -1.0086 29 1 2.5212 -3.3671 -2.0406 30 1 2.8649 -2.7297 -4.5869 31 1 1.4326 -2.9667 -5.6167 32 1 0.3945 -0.9377 -4.6398 33 1 1.8269 -0.7008 -3.6099 34 1 3.2461 -0.4929 -5.6330 35 1 1.8133 -0.7299 -6.6623 36 1 2.3157 1.6037 -6.3580 37 1 0.8697 1.2506 -5.6156 38 1 3.2751 -4.7720 -2.8676 39 1 3.6143 -7.1969 -3.1284 40 1 1.8342 -8.5913 -4.1031 41 1 -0.2876 -7.5618 -4.8112 42 1 -0.6298 -5.1381 -4.5431 43 1 1.6779 -4.5411 0.9894 44 1 2.6231 -3.1823 1.8026 45 1 0.4647 -1.9012 2.1705 46 1 -0.4807 -3.2598 1.3570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925658731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:30:48 Heat of formation + Delta-G solvation = 24.746422 kcal Electronic energy + Delta-G solvation = -23390.837620 eV Core-core repulsion = 20279.617980 eV Total energy + Delta-G solvation = -3111.219640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59011 -38.65690 -37.45542 -35.84744 -33.80650 -32.54628 -31.74253 -31.46569 -28.01280 -27.23482 -25.43521 -24.04628 -23.28529 -22.87858 -22.01188 -21.18769 -20.75639 -18.17601 -17.74055 -16.86073 -16.62667 -16.40890 -16.09339 -15.90838 -15.77687 -15.38145 -15.02317 -14.76492 -14.56311 -14.14428 -14.03753 -13.79506 -13.49259 -13.42760 -13.03649 -12.80100 -12.65399 -12.55787 -12.39838 -12.31614 -11.98189 -11.95486 -11.74929 -11.64285 -11.47570 -11.23615 -10.68956 -10.27354 -9.84713 -9.78740 -9.57700 -9.53938 -8.90492 -7.93703 -5.96757 0.49193 0.53505 1.46111 1.52692 1.55134 2.55638 2.92006 3.37781 3.41764 3.59880 3.63384 3.91636 4.02781 4.14705 4.19538 4.26598 4.31856 4.43140 4.44235 4.54361 4.61363 4.67389 4.69922 4.77394 4.79783 4.84343 4.86308 5.01273 5.04201 5.07702 5.16292 5.17613 5.20045 5.30779 5.44152 5.61023 5.63883 5.65283 5.68662 5.72895 5.78264 5.94888 6.16211 6.29656 6.44902 6.63961 6.64530 6.83831 7.03785 7.67585 9.15963 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.006243 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.961225 B = 4484.304588 C = 6282.243347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.036 3.964 3 Si 0.932 3.068 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.462 4.462 8 H 0.045 0.955 9 C 0.026 3.974 10 C 0.132 3.868 11 N -0.652 5.652 12 C 0.128 3.872 13 H 0.062 0.938 14 C -0.081 4.081 15 C -0.104 4.104 16 C 0.070 3.930 17 N -0.868 5.868 18 C -0.113 4.113 19 C -0.129 4.129 20 C -0.122 4.122 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.192 4.192 25 C -0.167 4.167 26 H 0.251 0.749 27 H 0.036 0.964 28 H 0.000 1.000 29 H 0.334 0.666 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.349 0.651 37 H 0.343 0.657 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 -11.428 -12.803 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.163 4.163 3 Si 0.760 3.240 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.500 4.500 8 H 0.064 0.936 9 C 0.026 3.974 10 C 0.003 3.997 11 N -0.282 5.282 12 C 0.017 3.983 13 H 0.081 0.919 14 C -0.119 4.119 15 C -0.142 4.142 16 C -0.061 4.061 17 N -0.399 5.399 18 C -0.115 4.115 19 C -0.148 4.148 20 C -0.140 4.140 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.149 4.149 24 C -0.229 4.229 25 C -0.205 4.205 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.155 0.845 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.142 0.858 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.511 -10.645 -12.181 16.371 hybrid contribution -0.372 0.233 -0.407 0.599 sum 2.139 -10.412 -12.589 16.476 Atomic orbital electron populations 1.70109 1.06751 1.26007 1.51973 1.25333 0.95161 1.00753 0.95081 0.85963 0.78857 0.81360 0.77784 1.20736 1.21825 1.19887 1.20278 0.92055 0.89562 1.48132 0.93644 1.19027 0.97876 0.93939 0.86589 1.21080 0.94050 0.93352 0.91243 1.60384 1.05903 1.61421 1.00468 1.20606 0.98541 0.88126 0.91011 0.91933 1.21337 1.00357 0.93845 0.96401 1.21345 0.98935 0.95001 0.98925 1.21750 1.00236 0.87479 0.96621 1.58610 1.16618 1.09671 1.55007 1.20841 0.94882 0.96978 0.98763 1.21090 0.97092 0.95938 1.00644 1.21390 1.00192 0.93311 0.99089 1.21455 0.93554 1.00903 0.98946 1.21427 0.98260 0.94580 0.99796 1.21249 0.98911 0.94642 1.00049 1.23044 0.97211 0.96208 1.06477 1.22388 0.93352 1.01273 1.03520 0.93983 0.94598 0.98240 0.84549 0.91888 0.90887 0.93985 0.92940 0.91517 0.94321 0.83751 0.84457 0.86311 0.84325 0.83769 0.84040 0.85835 0.89814 0.90536 0.92400 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.10 12.94 21.45 0.28 -52.82 16 2 C 0.04 2.00 5.39 84.65 0.46 2.46 16 3 Si 0.93 45.76 29.54 68.60 2.03 47.79 16 4 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.46 -25.16 8.15 25.60 0.21 -24.96 16 8 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 9 C 0.03 1.29 1.74 -52.93 -0.09 1.20 16 10 C 0.13 5.91 5.59 86.30 0.48 6.39 16 11 N -0.65 -25.64 4.97 -495.43 -2.46 -28.11 16 12 C 0.13 4.16 2.22 44.17 0.10 4.26 16 13 H 0.06 2.22 7.57 -2.39 -0.02 2.20 16 14 C -0.08 -2.34 4.87 30.59 0.15 -2.19 16 15 C -0.10 -3.44 5.36 30.59 0.16 -3.27 16 16 C 0.07 1.89 6.79 86.30 0.59 2.47 16 17 N -0.87 -23.94 9.62 -186.72 -1.80 -25.74 16 18 C -0.11 -3.21 4.78 -19.87 -0.09 -3.31 16 19 C -0.13 -3.46 9.11 22.27 0.20 -3.26 16 20 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 21 C -0.13 -2.63 10.05 22.27 0.22 -2.40 16 22 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 23 C -0.13 -3.30 9.67 22.27 0.22 -3.08 16 24 C -0.19 -8.26 9.88 30.59 0.30 -7.96 16 25 C -0.17 -8.01 9.48 30.59 0.29 -7.72 16 26 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.04 1.81 7.92 -2.38 -0.02 1.79 16 28 H 0.00 -0.01 7.89 -2.39 -0.02 -0.03 16 29 H 0.33 12.59 6.42 -89.69 -0.58 12.02 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.05 2.26 7.75 -2.38 -0.02 2.24 16 34 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.35 7.56 9.08 -89.69 -0.81 6.75 16 37 H 0.34 8.95 8.99 -89.69 -0.81 8.14 16 38 H 0.12 3.21 6.53 -2.91 -0.02 3.19 16 39 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.12 2.89 8.04 -2.91 -0.02 2.87 16 43 H 0.08 3.19 8.08 -2.39 -0.02 3.17 16 44 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 45 H 0.06 3.00 8.14 -2.38 -0.02 2.98 16 46 H 0.07 3.05 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -62.90 375.28 0.45 -62.45 By element: Atomic # 1 Polarization: 43.92 SS G_CDS: -1.23 Total: 42.69 kcal Atomic # 6 Polarization: -49.89 SS G_CDS: 3.64 Total: -46.25 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -3.98 Total: -106.67 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -62.90 0.45 -62.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925658731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.193 kcal (2) G-P(sol) polarization free energy of solvation -62.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds