Wall clock time and date at job start Fri Apr 10 2020 19:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40411 * 126.21131 * 2 1 4 4 C 1.31199 * 108.25174 * 180.02562 * 3 2 1 5 5 C 1.39270 * 107.86534 * 359.97438 * 4 3 2 6 6 C 1.34243 * 126.21090 * 180.02562 * 2 1 3 7 7 C 1.51905 * 127.70084 * 359.87638 * 6 2 1 8 8 C 1.53724 * 106.77764 * 244.02651 * 7 6 2 9 9 C 1.50948 * 110.76152 * 281.21949 * 8 7 6 10 10 N 1.44630 * 116.85045 * 72.67157 * 9 8 7 11 11 C 1.46902 * 110.99999 * 160.09321 * 10 9 8 12 12 C 1.52989 * 109.47391 * 284.11357 * 11 10 9 13 13 H 1.09004 * 109.47170 * 55.89863 * 12 11 10 14 14 C 1.47200 * 109.47539 * 295.90429 * 12 11 10 15 15 N 6.15141 * 132.98031 * 99.86552 * 2 1 3 16 16 C 1.52993 * 109.47605 * 175.90145 * 12 11 10 17 17 C 1.50704 * 109.47516 * 185.00276 * 16 12 11 18 18 H 1.07999 * 119.99898 * 359.97438 * 17 16 12 19 19 C 1.37883 * 119.99930 * 180.02562 * 17 16 12 20 20 N 1.31513 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99796 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47134 * 89.99627 * 21 19 17 23 23 H 1.48493 * 109.47439 * 210.00193 * 21 19 17 24 24 H 1.48506 * 109.47494 * 330.00367 * 21 19 17 25 25 C 1.47504 * 112.93649 * 285.48987 * 10 9 8 26 26 H 1.08996 * 109.46905 * 269.97326 * 1 2 3 27 27 H 1.09000 * 109.47093 * 29.97078 * 1 2 3 28 28 H 1.09004 * 109.47237 * 149.97571 * 1 2 3 29 29 H 1.07993 * 126.07177 * 180.02562 * 4 3 2 30 30 H 1.08996 * 109.97989 * 3.35648 * 7 6 2 31 31 H 1.08999 * 109.97989 * 124.71118 * 7 6 2 32 32 H 1.08998 * 109.17284 * 160.91132 * 8 7 6 33 33 H 1.08994 * 109.24504 * 41.57556 * 8 7 6 34 34 H 1.09007 * 107.96720 * 310.81750 * 9 8 7 35 35 H 1.09000 * 107.96861 * 194.51938 * 9 8 7 36 36 H 1.09001 * 109.47044 * 44.11566 * 11 10 9 37 37 H 1.09004 * 109.47254 * 164.11107 * 11 10 9 38 38 H 1.09005 * 109.47153 * 304.99979 * 16 12 11 39 39 H 1.08996 * 109.47211 * 64.99834 * 16 12 11 40 40 H 0.96995 * 119.99594 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.94799 * 200.37311 * 25 10 9 42 42 H 1.08992 * 109.94941 * 321.62474 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2945 1.1329 0.0000 4 6 3.5426 0.7284 -0.0006 5 6 3.5403 -0.6643 -0.0003 6 6 2.2581 -1.0831 -0.0005 7 6 1.8371 -2.5427 0.0015 8 6 2.3358 -3.1466 1.3242 9 6 3.8105 -3.4591 1.2474 10 7 4.7188 -2.3338 1.2702 11 6 6.0706 -2.7562 1.6606 12 6 6.1110 -3.0064 3.1693 13 1 5.3469 -3.7362 3.4372 14 6 5.8557 -1.7446 3.8831 15 7 5.6587 -0.7711 4.4337 16 6 7.4890 -3.5438 3.5605 17 6 7.4903 -3.9059 5.0234 18 1 6.5976 -3.7662 5.6151 19 6 8.6314 -4.4145 5.6067 20 7 9.7189 -4.5831 4.8866 21 14 8.6332 -4.8626 7.4201 22 1 8.2188 -6.2796 7.5803 23 1 9.9991 -4.6807 7.9737 24 1 7.6830 -3.9838 8.1482 25 6 4.7446 -1.5900 -0.0033 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 4.4166 1.3626 -0.0003 30 1 0.7512 -2.6172 -0.0566 31 1 2.2929 -3.0629 -0.8410 32 1 1.7846 -4.0643 1.5291 33 1 2.1611 -2.4360 2.1320 34 1 3.9887 -4.0166 0.3278 35 1 4.0604 -4.1099 2.0853 36 1 6.3311 -3.6737 1.1330 37 1 6.7844 -1.9737 1.4028 38 1 7.7155 -4.4295 2.9669 39 1 8.2433 -2.7793 3.3748 40 1 10.5215 -4.9412 5.2969 41 1 5.6622 -1.0061 -0.0744 42 1 4.6787 -2.2843 -0.8409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930712765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:03 Heat of formation + Delta-G solvation = 102.062456 kcal Electronic energy + Delta-G solvation = -22757.228677 eV Core-core repulsion = 19545.821368 eV Total energy + Delta-G solvation = -3211.407309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.47505 -38.39840 -36.02629 -34.31081 -33.70597 -32.91669 -31.37927 -30.71237 -27.71224 -26.75523 -25.64679 -24.41462 -22.83148 -21.68570 -20.99467 -20.42734 -19.11163 -17.02650 -16.57153 -16.37475 -15.65776 -15.40130 -14.79986 -14.67412 -14.50820 -14.41772 -13.83282 -13.45621 -13.17300 -13.12896 -12.86950 -12.55115 -12.46246 -12.33930 -11.91824 -11.73138 -11.42531 -11.35095 -11.26167 -11.09100 -10.98547 -10.96183 -10.65625 -10.52545 -10.40090 -10.09107 -9.51052 -9.24998 -9.20731 -8.43519 -8.25317 -8.02638 -6.07679 -4.10359 1.88118 2.46684 2.82812 3.30277 3.37411 3.42523 3.83372 3.93865 4.09112 4.40969 4.42676 4.44119 4.75301 4.81845 4.93228 4.98001 5.07816 5.12885 5.16924 5.29212 5.30743 5.37494 5.44827 5.56834 5.60255 5.70278 5.79805 5.80271 5.94536 5.98814 6.06822 6.21567 6.26956 6.41906 6.56385 6.67612 7.02142 7.28389 7.38772 7.45550 7.56915 7.72716 7.88059 8.26258 8.68971 8.94622 9.54944 11.03245 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.003529 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.707675 B = 7932.674460 C = 8022.362111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.374 5.374 3 N -0.308 5.308 4 C 0.064 3.936 5 C -0.223 4.223 6 C 0.091 3.909 7 C -0.055 4.055 8 C -0.109 4.109 9 C 0.062 3.938 10 N -0.549 5.549 11 C 0.068 3.932 12 C 0.012 3.988 13 H 0.098 0.902 14 C 0.258 3.742 15 N -0.482 5.482 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.056 0.944 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.140 3.860 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.181 0.819 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.082 0.918 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.225 1.459 -14.949 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.156 5.156 3 N -0.129 5.129 4 C -0.122 4.122 5 C -0.234 4.234 6 C -0.037 4.037 7 C -0.094 4.094 8 C -0.148 4.148 9 C -0.066 4.066 10 N -0.273 5.273 11 C -0.060 4.060 12 C -0.010 4.010 13 H 0.115 0.885 14 C -0.059 4.059 15 N -0.159 5.159 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.012 3.988 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.197 0.803 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.461 4.200 -13.763 22.626 hybrid contribution 0.913 -1.764 0.377 2.022 sum -16.549 2.436 -13.386 21.423 Atomic orbital electron populations 1.21768 0.74872 1.04019 1.03219 1.48160 1.06158 1.03664 1.57588 1.77564 1.01514 1.07471 1.26345 1.23607 0.95099 0.94508 0.98948 1.19805 0.93949 0.93706 1.15981 1.20896 0.91113 0.90530 1.01204 1.20764 1.00768 0.88143 0.99690 1.21315 0.95775 1.01168 0.96516 1.21130 0.92329 0.91928 1.01260 1.60475 1.08624 1.26632 1.31551 1.22237 0.88424 1.00514 0.94839 1.19241 1.03255 0.87773 0.90749 0.88467 1.28812 0.91084 0.93898 0.92103 1.80965 1.11083 1.12879 1.10935 1.19170 0.87714 0.96737 0.97131 1.21149 0.97796 1.42774 0.94555 0.92558 1.24946 0.95491 0.95518 0.98005 1.69936 1.01929 1.45175 1.36035 0.86609 0.77403 0.78810 0.85370 1.20512 1.21169 1.19856 1.20711 0.94932 0.93912 0.89278 0.90948 0.89496 0.89800 0.80254 0.90970 0.89455 0.90554 0.90929 0.95503 0.90424 0.92645 0.90198 0.94506 0.95576 0.92836 0.89998 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 11.23 59.85 0.67 1.46 16 2 N -0.37 -4.59 4.01 -63.72 -0.26 -4.84 16 3 N -0.31 -4.51 12.61 30.56 0.39 -4.12 16 4 C 0.06 0.87 12.01 -17.44 -0.21 0.67 16 5 C -0.22 -2.91 5.60 -104.84 -0.59 -3.50 16 6 C 0.09 1.09 6.06 -82.13 -0.50 0.59 16 7 C -0.05 -0.47 5.90 -26.91 -0.16 -0.63 16 8 C -0.11 -1.07 5.77 -27.39 -0.16 -1.23 16 9 C 0.06 0.70 4.66 -6.07 -0.03 0.67 16 10 N -0.55 -7.32 3.93 -238.01 -0.93 -8.25 16 11 C 0.07 0.99 4.35 -3.83 -0.02 0.97 16 12 C 0.01 0.22 2.24 -93.42 -0.21 0.01 16 13 H 0.10 1.69 6.63 -51.93 -0.34 1.34 16 14 C 0.26 5.51 13.65 -20.77 -0.28 5.23 16 15 N -0.48 -11.31 18.54 42.14 0.78 -10.53 16 16 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 17 C -0.52 -13.96 8.60 -34.44 -0.30 -14.25 16 18 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 21 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 25 C 0.14 1.66 5.67 -4.05 -0.02 1.64 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.42 7.18 -51.93 -0.37 0.05 16 29 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.07 0.47 6.99 -51.93 -0.36 0.11 16 31 H 0.09 0.68 7.88 -51.93 -0.41 0.27 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.90 7.92 -51.93 -0.41 0.49 16 34 H 0.03 0.27 7.53 -51.93 -0.39 -0.12 16 35 H 0.08 0.91 6.25 -51.93 -0.32 0.59 16 36 H 0.06 0.72 7.99 -51.93 -0.41 0.31 16 37 H 0.08 1.16 7.50 -51.93 -0.39 0.77 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 41 H 0.08 0.93 7.49 -51.93 -0.39 0.54 16 42 H 0.04 0.47 7.75 -51.93 -0.40 0.07 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -33.45 344.61 -7.41 -40.86 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.28 Total: -3.73 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.02 Total: -6.17 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.71 Total: -52.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.45 -7.41 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930712765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.925 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds