Wall clock time and date at job start Fri Apr 10 2020 19:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40411 * 126.21131 * 2 1 4 4 C 1.31199 * 108.25174 * 180.02562 * 3 2 1 5 5 C 1.39270 * 107.86534 * 359.97438 * 4 3 2 6 6 C 1.34243 * 126.21090 * 180.02562 * 2 1 3 7 7 C 1.51905 * 127.70084 * 359.87638 * 6 2 1 8 8 C 1.53724 * 106.77764 * 244.02651 * 7 6 2 9 9 C 1.50948 * 110.76152 * 281.21949 * 8 7 6 10 10 N 1.44630 * 116.85045 * 72.67157 * 9 8 7 11 11 C 1.46902 * 110.99999 * 160.09321 * 10 9 8 12 12 C 1.52989 * 109.47391 * 284.11357 * 11 10 9 13 13 H 1.09004 * 109.47170 * 55.89863 * 12 11 10 14 14 C 1.47200 * 109.47539 * 295.90429 * 12 11 10 15 15 N 6.15141 * 132.98031 * 99.86552 * 2 1 3 16 16 C 1.52993 * 109.47605 * 175.90145 * 12 11 10 17 17 C 1.50704 * 109.47516 * 185.00276 * 16 12 11 18 18 H 1.07999 * 119.99898 * 359.97438 * 17 16 12 19 19 C 1.37883 * 119.99930 * 180.02562 * 17 16 12 20 20 N 1.31513 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99796 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47134 * 89.99627 * 21 19 17 23 23 H 1.48493 * 109.47439 * 210.00193 * 21 19 17 24 24 H 1.48506 * 109.47494 * 330.00367 * 21 19 17 25 25 C 1.47504 * 112.93649 * 285.48987 * 10 9 8 26 26 H 1.08996 * 109.46905 * 269.97326 * 1 2 3 27 27 H 1.09000 * 109.47093 * 29.97078 * 1 2 3 28 28 H 1.09004 * 109.47237 * 149.97571 * 1 2 3 29 29 H 1.07993 * 126.07177 * 180.02562 * 4 3 2 30 30 H 1.08996 * 109.97989 * 3.35648 * 7 6 2 31 31 H 1.08999 * 109.97989 * 124.71118 * 7 6 2 32 32 H 1.08998 * 109.17284 * 160.91132 * 8 7 6 33 33 H 1.08994 * 109.24504 * 41.57556 * 8 7 6 34 34 H 1.09007 * 107.96720 * 310.81750 * 9 8 7 35 35 H 1.09000 * 107.96861 * 194.51938 * 9 8 7 36 36 H 1.09001 * 109.47044 * 44.11566 * 11 10 9 37 37 H 1.09004 * 109.47254 * 164.11107 * 11 10 9 38 38 H 1.09005 * 109.47153 * 304.99979 * 16 12 11 39 39 H 1.08996 * 109.47211 * 64.99834 * 16 12 11 40 40 H 0.96995 * 119.99594 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.94799 * 200.37311 * 25 10 9 42 42 H 1.08992 * 109.94941 * 321.62474 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2945 1.1329 0.0000 4 6 3.5426 0.7284 -0.0006 5 6 3.5403 -0.6643 -0.0003 6 6 2.2581 -1.0831 -0.0005 7 6 1.8371 -2.5427 0.0015 8 6 2.3358 -3.1466 1.3242 9 6 3.8105 -3.4591 1.2474 10 7 4.7188 -2.3338 1.2702 11 6 6.0706 -2.7562 1.6606 12 6 6.1110 -3.0064 3.1693 13 1 5.3469 -3.7362 3.4372 14 6 5.8557 -1.7446 3.8831 15 7 5.6587 -0.7711 4.4337 16 6 7.4890 -3.5438 3.5605 17 6 7.4903 -3.9059 5.0234 18 1 6.5976 -3.7662 5.6151 19 6 8.6314 -4.4145 5.6067 20 7 9.7189 -4.5831 4.8866 21 14 8.6332 -4.8626 7.4201 22 1 8.2188 -6.2796 7.5803 23 1 9.9991 -4.6807 7.9737 24 1 7.6830 -3.9838 8.1482 25 6 4.7446 -1.5900 -0.0033 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 4.4166 1.3626 -0.0003 30 1 0.7512 -2.6172 -0.0566 31 1 2.2929 -3.0629 -0.8410 32 1 1.7846 -4.0643 1.5291 33 1 2.1611 -2.4360 2.1320 34 1 3.9887 -4.0166 0.3278 35 1 4.0604 -4.1099 2.0853 36 1 6.3311 -3.6737 1.1330 37 1 6.7844 -1.9737 1.4028 38 1 7.7155 -4.4295 2.9669 39 1 8.2433 -2.7793 3.3748 40 1 10.5215 -4.9412 5.2969 41 1 5.6622 -1.0061 -0.0744 42 1 4.6787 -2.2843 -0.8409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930712765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:02 Heat of formation + Delta-G solvation = 81.111968 kcal Electronic energy + Delta-G solvation = -22758.137158 eV Core-core repulsion = 19545.821368 eV Total energy + Delta-G solvation = -3212.315790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.36694 -39.51088 -37.53371 -35.62279 -35.04990 -34.21543 -32.81518 -31.66425 -28.98410 -27.83031 -26.68835 -25.55424 -24.05697 -23.40042 -21.95824 -21.29652 -19.97823 -18.52636 -18.18709 -17.56941 -16.81988 -16.39742 -16.16208 -15.79602 -15.71639 -15.34257 -14.90511 -14.66660 -14.36033 -14.21847 -14.07596 -13.73433 -13.67690 -13.46010 -13.21863 -13.13879 -12.99858 -12.72663 -12.50006 -12.47915 -12.35842 -12.21805 -11.91399 -11.78248 -11.75266 -11.33674 -11.30702 -11.04228 -10.52006 -10.14908 -9.17924 -8.98577 -8.17088 -6.24694 0.98176 1.40718 1.43270 1.52204 1.70171 1.85410 2.13243 2.21387 2.43352 3.10646 3.18550 3.43531 3.65566 3.71787 4.03948 4.08004 4.15074 4.29488 4.35959 4.41305 4.47619 4.53168 4.61207 4.66270 4.71176 4.78342 4.82367 4.85886 4.95525 4.99950 5.06219 5.10080 5.23374 5.38022 5.44514 5.50744 5.67005 5.73531 5.82825 6.18769 6.23493 6.32103 6.48076 6.78643 6.86833 6.99748 7.43549 8.93661 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.003529 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.707675 B = 7932.674460 C = 8022.362111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.378 5.378 3 N -0.346 5.346 4 C 0.044 3.956 5 C -0.246 4.246 6 C 0.092 3.908 7 C -0.048 4.048 8 C -0.104 4.104 9 C 0.055 3.945 10 N -0.566 5.566 11 C 0.079 3.921 12 C 0.023 3.977 13 H 0.114 0.886 14 C 0.269 3.731 15 N -0.523 5.523 16 C 0.039 3.961 17 C -0.538 4.538 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.922 5.922 21 Si 0.946 3.054 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.279 1.279 25 C 0.145 3.855 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.187 0.813 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.001 0.999 40 H 0.264 0.736 41 H 0.079 0.921 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.881 -0.335 -15.867 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.160 5.160 3 N -0.168 5.168 4 C -0.140 4.140 5 C -0.257 4.257 6 C -0.038 4.038 7 C -0.087 4.087 8 C -0.142 4.142 9 C -0.073 4.073 10 N -0.290 5.290 11 C -0.049 4.049 12 C 0.001 3.999 13 H 0.131 0.869 14 C -0.046 4.046 15 N -0.201 5.201 16 C 0.000 4.000 17 C -0.576 4.576 18 H 0.069 0.931 19 C -0.186 4.186 20 N -0.562 5.562 21 Si 0.772 3.228 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.204 1.204 25 C 0.017 3.983 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.134 0.866 29 H 0.204 0.796 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.142 2.409 -14.688 24.248 hybrid contribution 1.370 -1.191 0.661 1.932 sum -17.771 1.218 -14.027 22.673 Atomic orbital electron populations 1.22128 0.72602 1.05931 1.04123 1.48537 1.07546 1.03185 1.56689 1.77471 1.02218 1.09307 1.27847 1.23891 0.95335 0.95497 0.99254 1.20054 0.95087 0.93512 1.17088 1.21467 0.90846 0.91963 0.99557 1.20899 1.02630 0.85635 0.99520 1.21290 0.95200 1.01624 0.96110 1.21266 0.92744 0.91270 1.02033 1.60365 1.08039 1.27792 1.32837 1.22044 0.89522 1.01531 0.91831 1.19247 1.00930 0.86492 0.93275 0.86874 1.29427 0.89961 0.94042 0.91215 1.80962 1.12393 1.14360 1.12397 1.18987 0.89590 0.96031 0.95392 1.21549 0.97480 1.42145 0.96432 0.93115 1.25675 0.95407 0.95804 1.01730 1.70024 1.02431 1.46209 1.37549 0.85731 0.77132 0.79046 0.80879 1.18997 1.21050 1.20374 1.20698 0.94534 0.93906 0.89118 0.90490 0.89024 0.86559 0.79622 0.88271 0.87725 0.87852 0.94000 0.93329 0.91099 0.90448 0.90584 0.94345 0.98101 0.92733 0.90217 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 11.23 127.77 1.43 2.66 16 2 N -0.38 -8.81 4.01 -355.52 -1.42 -10.23 16 3 N -0.35 -10.22 12.61 -57.23 -0.72 -10.94 16 4 C 0.04 1.24 12.01 85.04 1.02 2.26 16 5 C -0.25 -6.19 5.60 -20.00 -0.11 -6.30 16 6 C 0.09 2.01 6.06 41.81 0.25 2.26 16 7 C -0.05 -0.66 5.90 30.48 0.18 -0.48 16 8 C -0.10 -1.73 5.77 30.17 0.17 -1.55 16 9 C 0.05 1.07 4.66 86.06 0.40 1.47 16 10 N -0.57 -14.08 3.93 -906.93 -3.56 -17.64 16 11 C 0.08 2.17 4.35 86.30 0.38 2.55 16 12 C 0.02 0.81 2.24 -12.61 -0.03 0.78 16 13 H 0.11 3.75 6.63 -2.38 -0.02 3.74 16 14 C 0.27 11.54 13.65 89.45 1.22 12.76 16 15 N -0.52 -24.87 18.54 20.00 0.37 -24.50 16 16 C 0.04 1.77 4.42 29.85 0.13 1.90 16 17 C -0.54 -28.54 8.60 25.60 0.22 -28.32 16 18 H 0.05 2.69 7.59 -2.91 -0.02 2.67 16 19 C 0.01 0.70 5.46 84.66 0.46 1.16 16 20 N -0.92 -52.70 13.29 21.45 0.28 -52.42 16 21 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 C 0.15 3.21 5.67 85.82 0.49 3.69 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.12 0.76 7.18 -2.38 -0.02 0.74 16 29 H 0.19 4.51 8.06 -2.91 -0.02 4.48 16 30 H 0.10 0.83 6.99 -2.39 -0.02 0.82 16 31 H 0.10 1.14 7.88 -2.39 -0.02 1.12 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 0.97 7.92 -2.39 -0.02 0.95 16 34 H 0.05 0.76 7.53 -2.38 -0.02 0.74 16 35 H 0.07 1.47 6.25 -2.39 -0.01 1.46 16 36 H 0.08 1.81 7.99 -2.39 -0.02 1.79 16 37 H 0.08 2.14 7.50 -2.39 -0.02 2.12 16 38 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.08 1.75 7.49 -2.39 -0.02 1.73 16 42 H 0.07 1.16 7.75 -2.39 -0.02 1.14 16 Total: -1.00 -72.82 344.61 4.21 -68.62 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.01 Total: 6.70 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 6.22 Total: -5.15 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -5.05 Total: -115.73 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -72.82 4.21 -68.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930712765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.728 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds