Wall clock time and date at job start Fri Apr 10 2020 19:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46852 * 2 1 4 4 C 1.35402 * 126.51815 * 264.97544 * 3 2 1 5 5 N 1.30828 * 108.78486 * 179.97438 * 4 3 2 6 6 C 1.33381 * 109.13811 * 359.97438 * 5 4 3 7 7 C 1.35251 * 107.93885 * 0.08931 * 6 5 4 8 8 C 1.50699 * 123.49345 * 179.73508 * 7 6 5 9 9 C 1.53553 * 107.83436 * 344.35229 * 8 7 6 10 10 N 1.46911 * 109.59747 * 48.87263 * 9 8 7 11 11 C 1.46898 * 110.97743 * 53.04844 * 10 9 8 12 12 C 1.53001 * 109.46837 * 51.39298 * 11 10 9 13 13 H 1.08998 * 109.47909 * 303.06355 * 12 11 10 14 14 C 1.47204 * 109.46764 * 63.06430 * 12 11 10 15 15 N 8.27497 * 87.27551 * 46.22518 * 2 1 3 16 16 C 1.53002 * 109.47199 * 183.05788 * 12 11 10 17 17 C 1.50703 * 109.47149 * 175.00174 * 16 12 11 18 18 H 1.07998 * 119.99990 * 0.02562 * 17 16 12 19 19 C 1.37879 * 119.99719 * 180.02562 * 17 16 12 20 20 N 1.31517 * 120.00503 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99947 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46767 * 89.99790 * 21 19 17 23 23 H 1.48494 * 109.47425 * 210.00002 * 21 19 17 24 24 H 1.48508 * 109.46970 * 330.00469 * 21 19 17 25 25 C 1.47280 * 111.52336 * 288.73273 * 10 9 8 26 26 H 1.09005 * 109.47265 * 59.99846 * 1 2 3 27 27 H 1.08997 * 109.46843 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47067 * 300.00025 * 1 2 3 29 29 H 1.09002 * 109.47229 * 240.00331 * 2 1 3 30 30 H 1.08992 * 109.47542 * 119.99560 * 2 1 3 31 31 H 1.07990 * 125.60783 * 0.02562 * 4 3 2 32 32 H 1.09002 * 109.78637 * 103.92935 * 8 7 6 33 33 H 1.08995 * 109.78953 * 224.71126 * 8 7 6 34 34 H 1.08995 * 109.45526 * 168.92629 * 9 8 7 35 35 H 1.09008 * 109.45343 * 288.88385 * 9 8 7 36 36 H 1.08994 * 109.47720 * 171.39864 * 11 10 9 37 37 H 1.09001 * 109.47357 * 291.39945 * 11 10 9 38 38 H 1.09000 * 109.47519 * 295.00895 * 16 12 11 39 39 H 1.09000 * 109.47101 * 55.00320 * 16 12 11 40 40 H 0.96993 * 120.00117 * 179.97438 * 20 19 17 41 41 H 1.08997 * 109.69531 * 291.65933 * 25 10 9 42 42 H 1.09004 * 109.69586 * 171.06321 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3767 2.1092 -1.0840 5 7 2.7586 3.2959 -0.6871 6 6 2.6585 3.3659 0.6411 7 6 2.1980 2.1752 1.0876 8 6 1.9597 1.8687 2.5437 9 6 2.6832 2.9387 3.3740 10 7 2.3467 4.2729 2.8591 11 6 0.8911 4.4551 2.7822 12 6 0.2597 4.0906 4.1273 13 1 0.5289 3.0675 4.3898 14 6 0.7531 5.0096 5.1660 15 7 1.1366 5.7184 5.9683 16 6 -1.2624 4.2070 4.0246 17 6 -1.8905 3.7310 5.3091 18 1 -1.2664 3.3808 6.1180 19 6 -3.2618 3.7425 5.4516 20 7 -4.0218 4.1685 4.4664 21 14 -4.0404 3.1531 7.0440 22 1 -4.1824 4.2982 7.9790 23 1 -5.3796 2.5790 6.7575 24 1 -3.1780 2.1138 7.6617 25 6 2.9797 4.5235 1.5531 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 2.3507 1.7668 -2.1079 32 1 0.8911 1.8966 2.7566 33 1 2.3581 0.8828 2.7832 34 1 2.3714 2.8622 4.4156 35 1 3.7602 2.7849 3.3052 36 1 0.6671 5.4952 2.5456 37 1 0.4847 3.8098 2.0034 38 1 -1.5363 5.2475 3.8499 39 1 -1.6187 3.5938 3.1969 40 1 -4.9866 4.1762 4.5665 41 1 4.0595 4.6044 1.6778 42 1 2.5883 5.4470 1.1264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933262157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:05 Heat of formation + Delta-G solvation = 84.457798 kcal Electronic energy + Delta-G solvation = -23242.189929 eV Core-core repulsion = 20030.019225 eV Total energy + Delta-G solvation = -3212.170704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43238 -38.79327 -35.92070 -35.15773 -33.64571 -32.05196 -31.49076 -29.91504 -29.18125 -27.07802 -24.70565 -23.93412 -23.68949 -21.93600 -21.33474 -20.67436 -18.80373 -17.18431 -16.86532 -16.49823 -15.73680 -15.48433 -14.72127 -14.64721 -14.61239 -14.35826 -13.91006 -13.46633 -13.27547 -13.13672 -12.87159 -12.55385 -12.47567 -12.27544 -12.10257 -11.92847 -11.64360 -11.58994 -11.40668 -11.18747 -11.10121 -11.01903 -10.66355 -10.54318 -10.16241 -9.86838 -9.61126 -9.50055 -9.23297 -8.47666 -8.24590 -8.08759 -6.11213 -4.14730 1.98596 2.65579 3.11853 3.27774 3.34725 3.37176 3.72962 3.82149 4.06472 4.36066 4.39389 4.45423 4.58041 4.69410 4.86592 4.90881 4.98794 5.07237 5.19288 5.26766 5.30483 5.37139 5.43538 5.53743 5.61345 5.69046 5.75310 5.85683 5.90707 5.97461 6.10040 6.14133 6.34873 6.42573 6.48304 6.74129 7.09055 7.18610 7.22136 7.40960 7.52199 7.83734 8.10529 8.21144 8.58436 8.90150 9.50822 10.99587 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.004895 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.696252 B = 5718.561043 C = 6760.328170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.445 5.445 4 C 0.165 3.835 5 N -0.479 5.479 6 C -0.032 4.032 7 C -0.018 4.018 8 C -0.084 4.084 9 C 0.057 3.943 10 N -0.529 5.529 11 C 0.059 3.941 12 C 0.006 3.994 13 H 0.100 0.900 14 C 0.253 3.747 15 N -0.475 5.475 16 C 0.032 3.968 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.890 3.110 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.142 3.858 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.201 0.799 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.035 0.965 40 H 0.262 0.738 41 H 0.087 0.913 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.692 -10.695 -11.460 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.128 5.128 4 C -0.116 4.116 5 N -0.197 5.197 6 C -0.164 4.164 7 C -0.134 4.134 8 C -0.124 4.124 9 C -0.072 4.072 10 N -0.250 5.250 11 C -0.069 4.069 12 C -0.016 4.016 13 H 0.118 0.882 14 C -0.064 4.064 15 N -0.152 5.152 16 C -0.006 4.006 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.718 3.282 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 C 0.013 3.987 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.218 0.782 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.496 -8.758 -10.483 18.514 hybrid contribution -1.461 -2.048 0.215 2.525 sum 11.035 -10.806 -10.268 18.547 Atomic orbital electron populations 1.22166 0.93563 1.03316 1.03900 1.21851 0.96099 0.79839 1.04312 1.45121 1.48247 1.12445 1.06938 1.24953 1.04868 0.88423 0.93348 1.69895 1.20100 1.18154 1.11548 1.21429 1.07268 0.96593 0.91156 1.20885 1.09110 0.92881 0.90565 1.20904 1.03167 1.00740 0.87541 1.22264 1.00012 0.85976 0.98898 1.62496 1.10821 1.27386 1.24318 1.22300 0.85769 1.02546 0.96333 1.19347 0.99739 0.95116 0.87377 0.88240 1.28873 0.90829 0.93382 0.93283 1.81038 1.11870 1.10911 1.11407 1.19157 0.84458 0.98730 0.98282 1.21130 0.91680 1.43555 1.00034 0.92501 1.24949 0.97377 0.95117 0.96454 1.69941 1.04860 1.46596 1.31552 0.86613 0.78659 0.79125 0.83797 1.20580 1.21146 1.19758 1.20555 0.99675 0.93971 0.84541 0.91762 0.90492 0.91104 0.88962 0.89245 0.78202 0.89011 0.90598 0.89112 0.90498 0.89981 0.92580 0.95492 0.94683 0.92799 0.89506 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.10 0.72 6.75 -4.04 -0.03 0.70 16 3 N -0.45 -4.79 2.74 -113.93 -0.31 -5.10 16 4 C 0.16 1.89 12.58 -89.77 -1.13 0.76 16 5 N -0.48 -6.97 11.24 -10.71 -0.12 -7.09 16 6 C -0.03 -0.46 6.51 -82.92 -0.54 -1.00 16 7 C -0.02 -0.23 6.05 -81.88 -0.50 -0.73 16 8 C -0.08 -0.95 5.40 -27.60 -0.15 -1.10 16 9 C 0.06 0.70 5.30 -3.53 -0.02 0.68 16 10 N -0.53 -7.43 4.70 -235.30 -1.11 -8.53 16 11 C 0.06 0.93 3.75 -3.82 -0.01 0.91 16 12 C 0.01 0.11 1.51 -93.40 -0.14 -0.03 16 13 H 0.10 1.66 5.34 -51.93 -0.28 1.38 16 14 C 0.25 5.24 13.44 -20.72 -0.28 4.96 16 15 N -0.48 -10.71 18.55 42.20 0.78 -9.92 16 16 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 17 C -0.53 -13.77 8.60 -34.44 -0.30 -14.06 16 18 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 21 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.14 1.90 6.17 -4.70 -0.03 1.87 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.09 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.09 1.15 6.19 -51.93 -0.32 0.83 16 33 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 34 H 0.09 1.14 6.43 -51.93 -0.33 0.80 16 35 H 0.08 0.85 8.07 -51.92 -0.42 0.43 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.06 0.89 5.96 -51.93 -0.31 0.58 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -32.29 342.95 -9.09 -41.38 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.26 Total: -1.57 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.96 Total: -5.74 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.02 Total: -55.24 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.29 -9.09 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933262157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.840 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds