Wall clock time and date at job start Fri Apr 10 2020 19:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47374 * 262.55567 * 3 2 1 5 5 C 1.52998 * 109.47192 * 142.55187 * 3 2 1 6 6 N 1.46903 * 109.47139 * 22.55352 * 3 2 1 7 7 C 1.46896 * 110.99841 * 303.95346 * 6 3 2 8 8 C 1.38574 * 111.00070 * 179.97438 * 6 3 2 9 9 N 1.31224 * 126.47113 * 57.54039 * 8 6 3 10 10 N 1.28531 * 109.85642 * 179.82213 * 9 8 6 11 11 C 1.30293 * 110.05807 * 0.45046 * 10 9 8 12 12 C 1.50698 * 126.35305 * 179.76562 * 11 10 9 13 13 C 1.53000 * 109.47076 * 269.95994 * 12 11 10 14 14 C 1.50697 * 109.47409 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99783 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00111 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99818 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99986 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47494 * 59.99398 * 18 16 14 20 20 H 1.48497 * 109.47470 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47285 * 299.99739 * 18 16 14 22 22 N 1.36448 * 126.47695 * 237.84821 * 8 6 3 23 23 C 1.46505 * 127.13396 * 0.02562 * 22 8 6 24 24 C 1.50706 * 109.46992 * 94.03176 * 23 22 8 25 25 C 1.30995 * 119.99991 * 125.00136 * 24 23 22 26 26 H 4.18741 * 15.03826 * 359.97438 * 4 2 1 27 27 H 1.08996 * 109.47320 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.47158 * 299.99886 * 5 3 2 29 29 H 1.08997 * 109.46861 * 59.99795 * 5 3 2 30 30 H 1.08995 * 109.47567 * 65.69223 * 7 6 3 31 31 H 1.09002 * 109.47470 * 185.68976 * 7 6 3 32 32 H 1.09003 * 109.47320 * 305.68889 * 7 6 3 33 33 H 1.09002 * 109.46623 * 29.95227 * 12 11 10 34 34 H 1.08991 * 109.47409 * 149.95678 * 12 11 10 35 35 H 1.09002 * 109.46915 * 299.99917 * 13 12 11 36 36 H 1.09003 * 109.47171 * 59.99252 * 13 12 11 37 37 H 0.97003 * 120.00086 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.47544 * 214.03014 * 23 22 8 39 39 H 1.09001 * 109.47382 * 334.03435 * 23 22 8 40 40 H 1.07995 * 119.99742 * 304.99677 * 24 23 22 41 41 H 1.08002 * 119.99851 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.00072 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.1340 1.0189 5 6 3.1555 1.1461 -0.8771 6 7 3.1362 -1.2782 -0.5312 7 6 2.5900 -2.4089 0.2311 8 6 4.5215 -1.3115 -0.5459 9 7 5.3166 -1.1488 0.4852 10 7 6.5424 -1.2453 0.1108 11 6 6.6018 -1.4640 -1.1723 12 6 7.8547 -1.6316 -1.9928 13 6 8.3107 -0.2666 -2.5121 14 6 9.5639 -0.4341 -3.3321 15 1 9.9925 -1.4160 -3.4688 16 6 10.1639 0.6662 -3.9070 17 7 9.6422 1.8618 -3.7401 18 14 11.7169 0.4584 -4.9239 19 1 11.4396 -0.4404 -6.0731 20 1 12.1596 1.7832 -5.4279 21 1 12.7859 -0.1330 -4.0798 22 7 5.3165 -1.5139 -1.6362 23 6 4.8829 -1.7378 -3.0176 24 6 4.8612 -0.4244 -3.7564 25 6 5.5346 -0.2892 -4.8719 26 1 -1.0500 0.0005 -0.0002 27 1 4.2454 1.1463 -0.8775 28 1 2.7922 1.0127 -1.8961 29 1 2.7917 2.0949 -0.4830 30 1 1.5110 -2.4580 0.0854 31 1 3.0461 -3.3358 -0.1167 32 1 2.8078 -2.2720 1.2903 33 1 8.6395 -2.0652 -1.3730 34 1 7.6512 -2.2917 -2.8359 35 1 7.5258 0.1670 -3.1319 36 1 8.5141 0.3935 -1.6689 37 1 10.0645 2.6359 -4.1441 38 1 5.5758 -2.4202 -3.5099 39 1 3.8830 -2.1719 -3.0189 40 1 4.2905 0.4052 -3.3662 41 1 5.5187 0.6519 -5.4015 42 1 6.1057 -1.1188 -5.2619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121626748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:30 Heat of formation + Delta-G solvation = 159.767697 kcal Electronic energy + Delta-G solvation = -23155.911609 eV Core-core repulsion = 19947.006587 eV Total energy + Delta-G solvation = -3208.905022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.64577 -38.33292 -35.95919 -34.08811 -33.33674 -32.42768 -31.59263 -30.68700 -28.69596 -26.66763 -25.61636 -25.07111 -24.03443 -21.89918 -20.74558 -20.17544 -19.54411 -18.17702 -17.15371 -16.55481 -16.18445 -15.99725 -15.11219 -14.95340 -14.54083 -14.42326 -13.67164 -13.51084 -13.37939 -13.13740 -12.72931 -12.46665 -12.27842 -12.07933 -11.83928 -11.75251 -11.30701 -11.26261 -11.12176 -10.98968 -10.87077 -10.69754 -10.49397 -10.31823 -9.97016 -9.84962 -9.71728 -9.32330 -9.14391 -8.82075 -8.42048 -8.37802 -6.04314 -4.07956 1.92902 2.23804 2.45629 2.65713 2.99065 3.26093 3.30251 3.35701 3.37845 3.84795 4.11693 4.41387 4.79292 4.85305 5.00333 5.04206 5.08893 5.16263 5.28726 5.31783 5.32922 5.48783 5.56019 5.59929 5.67216 5.68588 5.77832 5.94339 6.08252 6.14777 6.31212 6.34569 6.46150 6.54463 6.69247 6.77250 6.86469 6.95151 7.38801 7.47262 7.60327 7.72026 7.93513 8.31177 8.97638 9.15026 9.56070 11.06509 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.024762 B = 0.004110 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.496803 B = 6811.182660 C = 7111.815505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.171 4.171 3 C 0.202 3.798 4 H 0.082 0.918 5 C -0.142 4.142 6 N -0.458 5.458 7 C 0.036 3.964 8 C 0.321 3.679 9 N -0.312 5.312 10 N -0.298 5.298 11 C 0.221 3.779 12 C -0.032 4.032 13 C 0.031 3.969 14 C -0.523 4.523 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 N -0.458 5.458 23 C 0.147 3.853 24 C -0.193 4.193 25 C -0.132 4.132 26 H 0.219 0.781 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.397 -6.222 1.634 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.096 3.904 4 H 0.100 0.900 5 C -0.200 4.200 6 N -0.184 5.184 7 C -0.111 4.111 8 C -0.035 4.035 9 N -0.156 5.156 10 N -0.138 5.138 11 C -0.046 4.046 12 C -0.072 4.072 13 C -0.007 4.007 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.150 5.150 23 C 0.025 3.975 24 C -0.212 4.212 25 C -0.170 4.170 26 H 0.236 0.764 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -17.085 -5.866 2.528 18.240 hybrid contribution 0.424 -0.060 -1.169 1.245 sum -16.661 -5.926 1.359 17.736 Atomic orbital electron populations 1.24847 0.95686 0.99398 1.01119 1.22566 0.93550 1.00919 1.00131 1.18559 0.84401 0.88473 0.98984 0.90005 1.21846 1.01925 0.96250 0.99953 1.58608 1.00404 1.04016 1.55350 1.22404 1.00421 0.91840 0.96444 1.21915 0.89915 1.07034 0.84623 1.74485 0.97338 1.19729 1.24078 1.74063 1.11198 1.19485 1.09049 1.25643 0.86320 1.00168 0.92469 1.20461 0.87762 1.03028 0.95927 1.19102 0.96372 0.88945 0.96330 1.21085 1.09778 0.93607 1.31662 0.92526 1.24969 0.97363 0.95233 0.96472 1.69959 1.40059 0.98396 1.44508 0.86667 0.83664 0.77200 0.80526 1.20261 1.21324 1.20152 1.46383 1.06553 1.53411 1.08699 1.20855 1.01911 0.96918 0.77851 1.22855 1.03188 0.97637 0.97498 1.23921 0.94580 1.01723 0.96749 0.76401 0.91438 0.91367 0.91119 0.90190 0.91162 0.93620 0.89432 0.91374 0.95738 0.95944 0.92899 0.88664 0.88129 0.87104 0.87790 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 19.25 29.55 0.57 -1.20 16 2 C -0.17 -1.95 11.25 -37.12 -0.42 -2.36 16 3 C 0.20 2.63 2.45 -70.50 -0.17 2.46 16 4 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 5 C -0.14 -1.88 8.88 37.16 0.33 -1.55 16 6 N -0.46 -6.21 4.64 -177.99 -0.83 -7.04 16 7 C 0.04 0.42 9.10 60.06 0.55 0.96 16 8 C 0.32 5.34 5.02 -318.88 -1.60 3.74 16 9 N -0.31 -6.12 12.09 30.31 0.37 -5.75 16 10 N -0.30 -6.41 12.18 32.99 0.40 -6.01 16 11 C 0.22 4.36 7.32 -154.01 -1.13 3.23 16 12 C -0.03 -0.64 5.53 -27.88 -0.15 -0.80 16 13 C 0.03 0.76 4.95 -27.88 -0.14 0.62 16 14 C -0.52 -14.00 9.11 -34.44 -0.31 -14.32 16 15 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 18 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 N -0.46 -7.67 2.79 -115.36 -0.32 -7.99 16 23 C 0.15 1.99 6.42 -5.19 -0.03 1.96 16 24 C -0.19 -2.75 9.54 -36.02 -0.34 -3.10 16 25 C -0.13 -1.89 13.44 29.02 0.39 -1.50 16 26 H 0.22 1.17 7.80 -54.09 -0.42 0.75 16 27 H 0.07 1.09 7.22 -51.93 -0.38 0.71 16 28 H 0.07 0.86 7.37 -51.93 -0.38 0.48 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.78 7.22 -51.93 -0.37 0.40 16 31 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 32 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.07 1.23 7.36 -51.93 -0.38 0.84 16 35 H 0.02 0.62 6.91 -51.93 -0.36 0.26 16 36 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.10 1.19 7.03 -51.93 -0.37 0.82 16 39 H 0.10 1.17 8.13 -51.93 -0.42 0.74 16 40 H 0.11 1.62 7.14 -52.49 -0.37 1.24 16 41 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.10 1.41 7.84 -52.48 -0.41 0.99 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -31.61 360.36 -8.16 -39.77 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.36 Total: 1.13 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.56 Total: -10.26 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.36 Total: -51.97 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.61 -8.16 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121626748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.535 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds