Wall clock time and date at job start Fri Apr 10 2020 19:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47374 * 262.55567 * 3 2 1 5 5 C 1.52998 * 109.47192 * 142.55187 * 3 2 1 6 6 N 1.46903 * 109.47139 * 22.55352 * 3 2 1 7 7 C 1.46896 * 110.99841 * 303.95346 * 6 3 2 8 8 C 1.38574 * 111.00070 * 179.97438 * 6 3 2 9 9 N 1.31224 * 126.47113 * 57.54039 * 8 6 3 10 10 N 1.28531 * 109.85642 * 179.82213 * 9 8 6 11 11 C 1.30293 * 110.05807 * 0.45046 * 10 9 8 12 12 C 1.50698 * 126.35305 * 179.76562 * 11 10 9 13 13 C 1.53000 * 109.47076 * 269.95994 * 12 11 10 14 14 C 1.50697 * 109.47409 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99783 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00111 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99818 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99986 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47494 * 59.99398 * 18 16 14 20 20 H 1.48497 * 109.47470 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47285 * 299.99739 * 18 16 14 22 22 N 1.36448 * 126.47695 * 237.84821 * 8 6 3 23 23 C 1.46505 * 127.13396 * 0.02562 * 22 8 6 24 24 C 1.50706 * 109.46992 * 94.03176 * 23 22 8 25 25 C 1.30995 * 119.99991 * 125.00136 * 24 23 22 26 26 H 4.18741 * 15.03826 * 359.97438 * 4 2 1 27 27 H 1.08996 * 109.47320 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.47158 * 299.99886 * 5 3 2 29 29 H 1.08997 * 109.46861 * 59.99795 * 5 3 2 30 30 H 1.08995 * 109.47567 * 65.69223 * 7 6 3 31 31 H 1.09002 * 109.47470 * 185.68976 * 7 6 3 32 32 H 1.09003 * 109.47320 * 305.68889 * 7 6 3 33 33 H 1.09002 * 109.46623 * 29.95227 * 12 11 10 34 34 H 1.08991 * 109.47409 * 149.95678 * 12 11 10 35 35 H 1.09002 * 109.46915 * 299.99917 * 13 12 11 36 36 H 1.09003 * 109.47171 * 59.99252 * 13 12 11 37 37 H 0.97003 * 120.00086 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.47544 * 214.03014 * 23 22 8 39 39 H 1.09001 * 109.47382 * 334.03435 * 23 22 8 40 40 H 1.07995 * 119.99742 * 304.99677 * 24 23 22 41 41 H 1.08002 * 119.99851 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.00072 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 0.1340 1.0189 5 6 3.1555 1.1461 -0.8771 6 7 3.1362 -1.2782 -0.5312 7 6 2.5900 -2.4089 0.2311 8 6 4.5215 -1.3115 -0.5459 9 7 5.3166 -1.1488 0.4852 10 7 6.5424 -1.2453 0.1108 11 6 6.6018 -1.4640 -1.1723 12 6 7.8547 -1.6316 -1.9928 13 6 8.3107 -0.2666 -2.5121 14 6 9.5639 -0.4341 -3.3321 15 1 9.9925 -1.4160 -3.4688 16 6 10.1639 0.6662 -3.9070 17 7 9.6422 1.8618 -3.7401 18 14 11.7169 0.4584 -4.9239 19 1 11.4396 -0.4404 -6.0731 20 1 12.1596 1.7832 -5.4279 21 1 12.7859 -0.1330 -4.0798 22 7 5.3165 -1.5139 -1.6362 23 6 4.8829 -1.7378 -3.0176 24 6 4.8612 -0.4244 -3.7564 25 6 5.5346 -0.2892 -4.8719 26 1 -1.0500 0.0005 -0.0002 27 1 4.2454 1.1463 -0.8775 28 1 2.7922 1.0127 -1.8961 29 1 2.7917 2.0949 -0.4830 30 1 1.5110 -2.4580 0.0854 31 1 3.0461 -3.3358 -0.1167 32 1 2.8078 -2.2720 1.2903 33 1 8.6395 -2.0652 -1.3730 34 1 7.6512 -2.2917 -2.8359 35 1 7.5258 0.1670 -3.1319 36 1 8.5141 0.3935 -1.6689 37 1 10.0645 2.6359 -4.1441 38 1 5.5758 -2.4202 -3.5099 39 1 3.8830 -2.1719 -3.0189 40 1 4.2905 0.4052 -3.3662 41 1 5.5187 0.6519 -5.4015 42 1 6.1057 -1.1188 -5.2619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121626748.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:30 Heat of formation + Delta-G solvation = 142.793698 kcal Electronic energy + Delta-G solvation = -23156.647657 eV Core-core repulsion = 19947.006587 eV Total energy + Delta-G solvation = -3209.641070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.06853 -39.42627 -37.25415 -35.89093 -34.42941 -33.84186 -33.25014 -31.65167 -30.29218 -27.94453 -27.15099 -26.42036 -25.12785 -23.75034 -22.01448 -21.62207 -20.80935 -19.05673 -18.63689 -18.20502 -17.52691 -17.24610 -16.51716 -16.19570 -16.01741 -15.68628 -15.16759 -14.92012 -14.61570 -14.50172 -14.22421 -13.71086 -13.52649 -13.44385 -13.04645 -12.87212 -12.80475 -12.79628 -12.63956 -12.51998 -12.42687 -12.08275 -11.80523 -11.66552 -11.49850 -11.28129 -11.23697 -11.06922 -10.56066 -10.36063 -10.01411 -9.91828 -8.14961 -6.26033 0.60649 0.98140 1.43998 1.45150 1.47648 1.54772 1.73097 1.86782 1.95585 2.45037 2.77887 3.19577 3.28169 3.46673 3.74344 3.82172 3.86498 3.97479 4.05919 4.12272 4.20598 4.37943 4.50099 4.51324 4.56033 4.69557 4.72074 4.77425 4.82475 4.89622 4.97240 5.03354 5.05359 5.08373 5.50021 5.50905 5.53021 5.61240 5.67539 5.72458 5.84888 6.17039 6.23054 6.64411 6.89038 7.43000 7.67896 8.96394 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.024762 B = 0.004110 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.496803 B = 6811.182660 C = 7111.815505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.221 4.221 3 C 0.206 3.794 4 H 0.065 0.935 5 C -0.135 4.135 6 N -0.453 5.453 7 C 0.037 3.963 8 C 0.344 3.656 9 N -0.344 5.344 10 N -0.333 5.333 11 C 0.208 3.792 12 C -0.018 4.018 13 C 0.043 3.957 14 C -0.536 4.536 15 H 0.069 0.931 16 C 0.007 3.993 17 N -0.930 5.930 18 Si 0.961 3.039 19 H -0.261 1.261 20 H -0.289 1.289 21 H -0.271 1.271 22 N -0.454 5.454 23 C 0.143 3.857 24 C -0.195 4.195 25 C -0.138 4.138 26 H 0.258 0.742 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.013 0.987 36 H -0.025 1.025 37 H 0.261 0.739 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.196 -7.739 0.462 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.222 4.222 3 C 0.100 3.900 4 H 0.083 0.917 5 C -0.193 4.193 6 N -0.179 5.179 7 C -0.110 4.110 8 C -0.013 4.013 9 N -0.188 5.188 10 N -0.173 5.173 11 C -0.061 4.061 12 C -0.057 4.057 13 C 0.004 3.996 14 C -0.574 4.574 15 H 0.087 0.913 16 C -0.192 4.192 17 N -0.570 5.570 18 Si 0.785 3.215 19 H -0.185 1.185 20 H -0.215 1.215 21 H -0.196 1.196 22 N -0.145 5.145 23 C 0.022 3.978 24 C -0.214 4.214 25 C -0.176 4.176 26 H 0.274 0.726 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.031 0.969 36 H -0.006 1.006 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.144 0.856 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.895 -7.408 1.353 20.340 hybrid contribution 0.812 0.458 -0.770 1.209 sum -18.083 -6.949 0.583 19.381 Atomic orbital electron populations 1.25722 0.96272 0.96349 0.98081 1.22303 0.93292 1.03718 1.02893 1.18363 0.86152 0.87749 0.97746 0.91729 1.21776 0.99370 0.97492 1.00656 1.58892 0.98138 1.05147 1.55746 1.22489 1.01764 0.91004 0.95697 1.22241 0.91051 1.04073 0.83969 1.74406 0.97142 1.21649 1.25591 1.73957 1.12552 1.20439 1.10362 1.25391 0.87264 1.01205 0.92204 1.20188 0.88144 1.00608 0.96787 1.18861 0.95825 0.90639 0.94234 1.21519 1.10310 0.94180 1.31344 0.91260 1.25869 1.00713 0.94849 0.97731 1.70111 1.41807 0.99294 1.45814 0.85568 0.79448 0.77220 0.79214 1.18534 1.21502 1.19614 1.46503 1.05548 1.52644 1.09834 1.21162 1.03728 0.96820 0.76061 1.22869 1.03112 0.97927 0.97501 1.24020 0.94592 1.01951 0.96994 0.72604 0.95119 0.90774 0.89793 0.87747 0.90749 0.94390 0.89592 0.88582 0.96876 1.00625 0.92996 0.87075 0.85553 0.87863 0.88108 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 19.25 74.32 1.43 -0.69 16 2 C -0.22 -4.56 11.25 31.13 0.35 -4.21 16 3 C 0.21 5.30 2.45 43.11 0.11 5.41 16 4 H 0.06 1.86 8.06 -2.39 -0.02 1.84 16 5 C -0.14 -3.64 8.88 71.98 0.64 -3.00 16 6 N -0.45 -11.90 4.64 -717.03 -3.32 -15.22 16 7 C 0.04 0.79 9.10 127.69 1.16 1.96 16 8 C 0.34 11.48 5.02 260.11 1.31 12.78 16 9 N -0.34 -13.93 12.09 -58.01 -0.70 -14.63 16 10 N -0.33 -14.85 12.18 -49.54 -0.60 -15.45 16 11 C 0.21 8.33 7.32 137.64 1.01 9.34 16 12 C -0.02 -0.71 5.53 29.85 0.16 -0.55 16 13 C 0.04 2.18 4.95 29.85 0.15 2.33 16 14 C -0.54 -28.74 9.11 25.60 0.23 -28.50 16 15 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 16 C 0.01 0.37 5.46 84.66 0.46 0.83 16 17 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 18 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 N -0.45 -15.08 2.79 -518.90 -1.45 -16.53 16 23 C 0.14 3.66 6.42 85.63 0.55 4.21 16 24 C -0.20 -5.48 9.54 25.65 0.24 -5.24 16 25 C -0.14 -3.90 13.44 67.79 0.91 -2.99 16 26 H 0.26 1.36 7.80 -4.42 -0.03 1.32 16 27 H 0.03 1.03 7.22 -2.39 -0.02 1.01 16 28 H 0.07 1.86 7.37 -2.38 -0.02 1.85 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.10 1.73 7.22 -2.39 -0.02 1.72 16 31 H 0.07 1.53 8.06 -2.39 -0.02 1.51 16 32 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.10 3.31 7.36 -2.39 -0.02 3.29 16 35 H 0.01 0.68 6.91 -2.39 -0.02 0.67 16 36 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.11 2.51 7.03 -2.39 -0.02 2.50 16 39 H 0.13 2.59 8.13 -2.39 -0.02 2.57 16 40 H 0.10 3.04 7.14 -2.91 -0.02 3.02 16 41 H 0.10 2.88 8.06 -2.91 -0.02 2.85 16 42 H 0.11 2.92 7.84 -2.91 -0.02 2.90 16 Total: -1.00 -70.48 360.36 5.94 -64.54 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.99 Total: 15.95 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 8.72 Total: -8.33 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -5.79 Total: -116.87 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -70.48 5.94 -64.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121626748.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.338 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds