Wall clock time and date at job start Fri Apr 10 2020 19:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38682 * 119.27832 * 2 1 4 4 C 1.38013 * 119.62800 * 179.97438 * 3 2 1 5 5 C 1.41002 * 118.28152 * 0.02562 * 4 3 2 6 6 C 1.41017 * 120.70602 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00196 * 154.84968 * 6 5 4 8 8 C 1.39955 * 120.00108 * 334.85215 * 6 5 4 9 9 N 1.30875 * 119.99661 * 343.97615 * 8 6 5 10 10 Si 1.86797 * 119.99967 * 163.97923 * 8 6 5 11 11 H 1.48496 * 109.47422 * 59.99913 * 10 8 6 12 12 H 1.48501 * 109.47026 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47143 * 299.99768 * 10 8 6 14 14 C 1.41710 * 118.58875 * 359.97438 * 5 4 3 15 15 N 1.38085 * 119.90245 * 179.97438 * 14 5 4 16 16 C 1.46505 * 119.99615 * 180.02562 * 15 14 5 17 17 C 1.53004 * 109.46981 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.47260 * 54.99769 * 17 16 15 19 19 C 1.52999 * 109.46973 * 295.00043 * 17 16 15 20 20 C 1.52995 * 109.47143 * 180.02562 * 19 17 16 21 21 C 1.52994 * 109.47260 * 60.00056 * 20 19 17 22 22 C 1.52999 * 109.46996 * 300.00033 * 21 20 19 23 23 C 1.52999 * 109.47470 * 60.00000 * 22 21 20 24 24 H 1.09004 * 109.46815 * 59.99601 * 23 22 21 25 25 C 1.53001 * 109.47531 * 180.02562 * 23 22 21 26 26 N 1.31975 * 119.27872 * 180.23006 * 2 1 3 27 27 H 1.09003 * 109.46699 * 89.99829 * 1 2 3 28 28 H 1.08996 * 109.47320 * 210.00219 * 1 2 3 29 29 H 1.08999 * 109.46748 * 330.00075 * 1 2 3 30 30 H 1.07996 * 120.18660 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.85674 * 179.97438 * 4 3 2 32 32 H 0.96998 * 119.99462 * 179.97438 * 9 8 6 33 33 H 0.96995 * 120.00643 * 359.97438 * 15 14 5 34 34 H 1.08995 * 109.46916 * 60.00116 * 16 15 14 35 35 H 1.08994 * 109.47162 * 299.99589 * 16 15 14 36 36 H 1.09004 * 109.47427 * 299.99972 * 19 17 16 37 37 H 1.08995 * 109.47492 * 59.99931 * 19 17 16 38 38 H 1.09008 * 109.47565 * 179.97438 * 20 19 17 39 39 H 1.08996 * 109.47410 * 299.99931 * 20 19 17 40 40 H 1.09007 * 109.47551 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47634 * 60.00051 * 21 20 19 42 42 H 1.09004 * 109.47427 * 299.99975 * 22 21 20 43 43 H 1.09007 * 109.47210 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47149 * 180.02562 * 25 23 22 45 45 H 1.08998 * 109.46426 * 299.99777 * 25 23 22 46 46 H 1.08996 * 109.47191 * 59.99450 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5653 1.2181 0.0005 5 6 4.2410 -0.0195 0.0005 6 6 5.6502 -0.0706 0.0016 7 1 6.1589 -0.9363 0.3991 8 6 6.3897 1.0007 -0.5124 9 7 5.8060 1.8959 -1.2680 10 14 8.2096 1.1529 -0.1201 11 1 8.9256 -0.0489 -0.6183 12 1 8.7586 2.3645 -0.7802 13 1 8.3916 1.2638 1.3495 14 6 3.4737 -1.2110 0.0005 15 7 4.1074 -2.4378 -0.0001 16 6 3.3162 -3.6709 -0.0006 17 6 4.2549 -4.8791 -0.0005 18 1 4.9430 -4.8046 0.8416 19 6 5.0497 -4.9075 -1.3076 20 6 5.9879 -6.1160 -1.3078 21 6 5.1656 -7.4001 -1.1830 22 6 4.3708 -7.3717 0.1240 23 6 3.4325 -6.1632 0.1243 24 1 2.7444 -6.2373 -0.7179 25 6 2.6381 -6.1344 1.4316 26 7 2.1524 -1.1511 -0.0046 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6365 2.1398 0.0004 31 1 4.1136 2.1486 0.0001 32 1 6.3184 2.6386 -1.6239 33 1 5.0763 -2.4833 -0.0008 34 1 2.6876 -3.6987 -0.8906 35 1 2.6876 -3.6996 0.8893 36 1 4.3617 -4.9820 -2.1497 37 1 5.6353 -3.9925 -1.3968 38 1 6.5539 -6.1366 -2.2392 39 1 6.6760 -6.0420 -0.4657 40 1 5.8340 -8.2612 -1.1827 41 1 4.4775 -7.4743 -2.0251 42 1 5.0588 -7.2977 0.9662 43 1 3.7852 -8.2868 0.2132 44 1 1.9694 -5.2737 1.4316 45 1 2.0523 -7.0493 1.5209 46 1 3.3265 -6.0602 2.2735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155078882.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:31:59 Heat of formation + Delta-G solvation = -9.872473 kcal Electronic energy + Delta-G solvation = -23285.701086 eV Core-core repulsion = 20172.980258 eV Total energy + Delta-G solvation = -3112.720828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.24285 -38.35390 -34.83340 -34.06008 -32.67243 -31.46257 -30.55771 -29.13965 -27.66383 -26.46923 -24.92623 -23.69000 -21.73689 -21.06208 -20.60941 -20.20809 -19.55010 -17.19218 -16.12480 -15.55021 -15.03916 -14.67852 -14.52106 -14.23001 -14.01785 -13.79239 -13.68720 -13.23643 -12.85483 -12.64605 -12.38093 -12.09549 -11.93816 -11.78764 -11.55347 -11.51124 -11.46705 -11.39410 -11.35415 -11.12330 -10.85369 -10.79452 -10.76891 -10.48918 -10.28940 -9.90196 -9.84350 -9.67900 -9.22765 -8.74489 -8.00466 -7.82138 -6.75837 -6.42356 -4.17164 2.76107 3.06713 3.08426 3.14981 3.27533 3.94106 4.42790 4.69751 4.72538 4.78244 4.86485 5.19392 5.21995 5.43924 5.48638 5.57393 5.57677 5.65108 5.70927 5.76134 5.87167 5.91169 5.94588 6.07626 6.10526 6.17147 6.17677 6.22895 6.28190 6.32305 6.40563 6.47207 6.48831 6.51304 6.60363 6.61775 6.71907 6.87122 7.01324 7.16299 7.27477 7.71480 7.83844 8.05792 8.34265 8.60415 8.71162 8.83104 9.06674 9.85913 10.24418 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.005415 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.336229 B = 5170.055066 C = 7064.761427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.026 3.974 3 C -0.188 4.188 4 C -0.124 4.124 5 C 0.028 3.972 6 C -0.456 4.456 7 H 0.073 0.927 8 C 0.075 3.925 9 N -0.800 5.800 10 Si 0.906 3.094 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.265 1.265 14 C 0.310 3.690 15 N -0.729 5.729 16 C 0.149 3.851 17 C -0.093 4.093 18 H 0.071 0.929 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.112 4.112 23 C -0.081 4.081 24 H 0.070 0.930 25 C -0.151 4.151 26 N -0.529 5.529 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.279 0.721 33 H 0.401 0.599 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 -12.496 1.347 12.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 C -0.210 4.210 4 C -0.150 4.150 5 C 0.021 3.979 6 C -0.487 4.487 7 H 0.091 0.909 8 C -0.141 4.141 9 N -0.426 5.426 10 Si 0.730 3.270 11 H -0.192 1.192 12 H -0.204 1.204 13 H -0.190 1.190 14 C 0.072 3.928 15 N -0.369 5.369 16 C 0.024 3.976 17 C -0.112 4.112 18 H 0.089 0.911 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.150 4.150 23 C -0.100 4.100 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.248 5.248 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.090 0.910 33 H 0.238 0.762 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.366 -13.125 1.195 13.250 hybrid contribution 1.748 1.023 0.006 2.025 sum 0.382 -12.102 1.201 12.167 Atomic orbital electron populations 1.20281 0.91913 1.00603 1.00314 1.19958 0.94243 0.88056 1.08548 1.21212 0.95373 0.96590 1.07868 1.21338 0.92090 0.98200 1.03353 1.17911 0.93860 0.90136 0.95955 1.19080 0.90781 1.02792 1.36079 0.90918 1.25790 1.00620 0.94941 0.92760 1.69808 1.38414 1.11092 1.23316 0.86413 0.82334 0.78454 0.79762 1.19165 1.20437 1.18996 1.18428 0.87901 0.85647 1.00798 1.43741 1.07378 1.01348 1.84409 1.21008 0.93000 0.82933 1.00634 1.21418 0.97283 0.94280 0.98210 0.91089 1.21578 0.98224 0.98001 0.97397 1.21542 0.97915 0.94751 1.01470 1.21534 0.98690 0.97510 0.97900 1.21582 0.98081 0.97593 0.97715 1.21053 0.96606 0.94054 0.98322 0.91200 1.21916 1.00108 1.01714 0.97097 1.66354 1.08398 1.29751 1.20269 0.93294 0.92830 0.92977 0.88884 0.85745 0.90993 0.76226 0.93590 0.93039 0.92051 0.91324 0.92328 0.92169 0.92534 0.92171 0.92135 0.92347 0.91769 0.93161 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.15 36.00 0.37 -1.01 16 2 C 0.03 0.62 6.79 -82.37 -0.56 0.06 16 3 C -0.19 -4.54 9.69 -39.50 -0.38 -4.93 16 4 C -0.12 -3.25 8.79 -38.62 -0.34 -3.59 16 5 C 0.03 0.75 5.60 -106.47 -0.60 0.16 16 6 C -0.46 -11.68 8.52 -37.89 -0.32 -12.00 16 7 H 0.07 1.75 6.69 -52.49 -0.35 1.40 16 8 C 0.08 1.87 5.20 -17.32 -0.09 1.78 16 9 N -0.80 -20.61 10.93 55.55 0.61 -20.00 16 10 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 11 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 12 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 14 C 0.31 7.71 7.52 -155.03 -1.17 6.55 16 15 N -0.73 -15.22 5.34 -59.97 -0.32 -15.54 16 16 C 0.15 2.61 4.85 -4.04 -0.02 2.59 16 17 C -0.09 -1.27 1.75 -90.62 -0.16 -1.43 16 18 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.11 -1.54 5.08 -26.73 -0.14 -1.68 16 20 C -0.12 -1.34 5.92 -26.74 -0.16 -1.50 16 21 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 22 C -0.11 -1.13 5.20 -26.73 -0.14 -1.27 16 23 C -0.08 -0.95 2.25 -90.62 -0.20 -1.15 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 C -0.15 -1.71 8.85 37.16 0.33 -1.38 16 26 N -0.53 -13.02 9.44 -8.11 -0.08 -13.10 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.09 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.12 3.36 6.25 -52.49 -0.33 3.03 16 32 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 33 H 0.40 8.09 5.85 -40.82 -0.24 7.86 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.94 6.17 -51.93 -0.32 0.62 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 1.04 7.18 -51.93 -0.37 0.66 16 38 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -27.70 355.58 -11.03 -38.73 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -7.83 Total: 11.26 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -3.74 Total: -20.17 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.21 Total: -48.64 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.70 -11.03 -38.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155078882.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.855 kcal (2) G-P(sol) polarization free energy of solvation -27.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds