Wall clock time and date at job start Fri Apr 10 2020 19:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.85461 * 2 1 4 4 C 1.55287 * 110.93446 * 123.71803 * 2 1 3 5 5 H 1.09003 * 113.22596 * 314.17220 * 4 2 1 6 6 C 1.54988 * 103.09964 * 76.85803 * 4 2 1 7 7 C 1.54060 * 104.76714 * 24.64983 * 6 4 2 8 8 N 1.48240 * 106.69629 * 1.01191 * 7 6 4 9 9 C 1.47679 * 108.91238 * 88.16822 * 8 7 6 10 10 C 1.51661 * 109.66997 * 312.38429 * 9 8 7 11 11 H 1.09000 * 109.99552 * 184.77370 * 10 9 8 12 12 N 1.46500 * 108.00707 * 65.60194 * 10 9 8 13 13 C 1.37945 * 119.99818 * 120.13478 * 12 10 9 14 14 N 1.32624 * 120.23498 * 359.71936 * 13 12 10 15 15 C 1.32238 * 120.08206 * 179.77267 * 14 13 12 16 16 C 1.38967 * 120.57159 * 0.50967 * 15 14 13 17 17 N 1.31708 * 120.47401 * 359.74587 * 16 15 14 18 18 C 1.33910 * 119.89981 * 359.97438 * 17 16 15 19 19 C 1.40824 * 120.27977 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99490 * 187.62094 * 19 18 17 21 21 C 1.40116 * 119.99830 * 7.61634 * 19 18 17 22 22 N 1.30732 * 120.00206 * 7.07967 * 21 19 18 23 23 Si 1.86799 * 119.99595 * 187.07910 * 21 19 18 24 24 H 1.48506 * 109.47089 * 84.99663 * 23 21 19 25 25 H 1.48498 * 109.47200 * 204.99265 * 23 21 19 26 26 H 1.48500 * 109.47519 * 324.99486 * 23 21 19 27 27 C 1.53152 * 110.81038 * 305.82961 * 10 9 8 28 28 H 1.09002 * 109.46648 * 296.28229 * 1 2 3 29 29 H 1.08997 * 109.47485 * 56.28058 * 1 2 3 30 30 H 1.08999 * 109.47114 * 176.28482 * 1 2 3 31 31 H 1.09000 * 110.37856 * 143.47273 * 6 4 2 32 32 H 1.08997 * 110.38035 * 265.82681 * 6 4 2 33 33 H 1.08996 * 110.01588 * 120.32713 * 7 6 4 34 34 H 1.09006 * 110.01430 * 241.66232 * 7 6 4 35 35 H 1.09000 * 109.50062 * 72.85313 * 9 8 7 36 36 H 1.08992 * 109.50343 * 192.93650 * 9 8 7 37 37 H 0.96995 * 120.00682 * 300.12858 * 12 10 9 38 38 H 1.08005 * 119.71508 * 180.22991 * 15 14 13 39 39 H 1.07998 * 119.76366 * 179.76807 * 16 15 14 40 40 H 0.96999 * 119.99855 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.63028 * 293.06233 * 27 10 9 42 42 H 1.09000 * 109.63194 * 172.66757 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0849 -0.8051 1.2064 5 1 1.5866 -0.5688 2.1466 6 6 1.8898 -2.2780 0.7653 7 6 1.8692 -2.2274 -0.7744 8 7 2.0681 -0.8090 -1.1565 9 6 3.5164 -0.5402 -1.2620 10 6 4.2278 -1.0898 -0.0405 11 1 5.2836 -0.8208 -0.0716 12 7 4.1000 -2.5490 -0.0602 13 6 5.2296 -3.3398 -0.1009 14 7 6.4333 -2.7839 -0.1279 15 6 7.5143 -3.5448 -0.1623 16 6 7.4032 -4.9299 -0.1813 17 7 6.2187 -5.5054 -0.1602 18 6 5.1117 -4.7531 -0.1197 19 6 3.8412 -5.3600 -0.0963 20 1 2.9517 -4.7543 -0.1878 21 6 3.7311 -6.7496 0.0455 22 7 4.7949 -7.4676 0.2945 23 14 2.0643 -7.5763 -0.1212 24 1 1.7855 -7.8434 -1.5552 25 1 2.0701 -8.8578 0.6289 26 1 1.0122 -6.6848 0.4298 27 6 3.6019 -0.5425 1.2458 28 1 -0.3633 0.4551 0.9215 29 1 -0.3634 0.5705 -0.8547 30 1 -0.3633 -1.0255 -0.0666 31 1 2.7205 -2.8918 1.1138 32 1 0.9447 -2.6660 1.1450 33 1 2.6755 -2.8393 -1.1786 34 1 0.9085 -2.5835 -1.1465 35 1 3.9099 -1.0140 -2.1613 36 1 3.6840 0.5354 -1.3141 37 1 3.2212 -2.9593 -0.0446 38 1 8.4918 -3.0859 -0.1804 39 1 8.2946 -5.5388 -0.2132 40 1 4.7185 -8.4295 0.3931 41 1 3.7863 0.5295 1.3154 42 1 4.0384 -1.0460 2.1084 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170965345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:36 Heat of formation + Delta-G solvation = 143.005265 kcal Electronic energy + Delta-G solvation = -24457.074950 eV Core-core repulsion = 21247.443054 eV Total energy + Delta-G solvation = -3209.631895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.70046 -38.75169 -34.84560 -34.01495 -32.02373 -31.79531 -31.69258 -30.49011 -28.50779 -26.11639 -25.15071 -24.16906 -22.36877 -21.54810 -20.75211 -20.40339 -19.73959 -17.64437 -17.25023 -16.05132 -15.36992 -14.78155 -14.54963 -14.15788 -13.99630 -13.93678 -13.73680 -13.58649 -12.96695 -12.78266 -12.43286 -12.32941 -12.10473 -11.99561 -11.65607 -11.42443 -11.35521 -11.17118 -11.05621 -10.89301 -10.66951 -10.44890 -10.26138 -10.25068 -10.06288 -9.78478 -9.44094 -9.23574 -8.59682 -8.15612 -7.33514 -6.72322 -6.46683 -4.42207 2.65657 3.03068 3.04332 3.06857 3.23807 3.86957 4.07312 4.37379 4.70985 4.72174 4.82724 5.01059 5.28808 5.36098 5.39608 5.43625 5.47905 5.59759 5.73920 5.80412 5.85589 5.86022 5.88454 6.05260 6.09285 6.11661 6.16392 6.17532 6.22800 6.32190 6.35919 6.38703 6.49462 6.50880 6.76560 6.97917 6.98908 7.06260 7.15886 7.65075 7.95626 8.11820 8.38722 8.61548 8.86029 9.45196 9.98505 10.22532 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.007312 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.175610 B = 3828.211769 C = 5264.066083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.054 3.946 3 H 0.085 0.915 4 C -0.115 4.115 5 H 0.085 0.915 6 C -0.185 4.185 7 C -0.009 4.009 8 N -0.487 5.487 9 C 0.026 3.974 10 C 0.121 3.879 11 H 0.102 0.898 12 N -0.740 5.740 13 C 0.250 3.750 14 N -0.501 5.501 15 C -0.082 4.082 16 C 0.027 3.973 17 N -0.450 5.450 18 C 0.197 3.803 19 C -0.433 4.433 20 H 0.078 0.922 21 C 0.074 3.926 22 N -0.717 5.717 23 Si 0.901 3.099 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.126 4.126 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.431 0.569 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.276 0.724 41 H 0.064 0.936 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 9.781 0.879 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.054 4.054 3 H 0.104 0.896 4 C -0.135 4.135 5 H 0.104 0.896 6 C -0.224 4.224 7 C -0.138 4.138 8 N -0.209 5.209 9 C -0.104 4.104 10 C 0.013 3.987 11 H 0.120 0.880 12 N -0.404 5.404 13 C 0.004 3.996 14 N -0.223 5.223 15 C -0.236 4.236 16 C -0.136 4.136 17 N -0.167 5.167 18 C 0.062 3.938 19 C -0.467 4.467 20 H 0.096 0.904 21 C -0.152 4.152 22 N -0.339 5.339 23 Si 0.725 3.275 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.165 4.165 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.294 0.706 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.192 9.755 0.334 12.124 hybrid contribution -0.295 -0.769 0.821 1.163 sum -7.487 8.986 1.155 11.754 Atomic orbital electron populations 1.21631 0.94168 1.02278 1.01186 1.23510 0.95550 0.97210 0.89159 0.89643 1.23024 0.96474 0.95069 0.98917 0.89628 1.23721 1.03893 0.98090 0.96726 1.23843 1.03769 0.92133 0.94050 1.66896 1.12745 1.03936 1.37351 1.22692 0.88272 1.00657 0.98797 1.21076 1.01651 0.82913 0.93100 0.87996 1.47237 1.06979 1.03393 1.82767 1.19669 0.87390 0.89948 1.02598 1.67300 0.97707 1.39644 1.17617 1.22284 0.95325 0.91951 1.14022 1.23104 0.96929 0.92925 1.00669 1.69383 0.96166 1.35180 1.16003 1.18989 0.93951 0.86521 0.94331 1.19162 0.91416 0.92252 1.43870 0.90356 1.25937 0.97956 0.97699 0.93593 1.70017 1.29418 1.06952 1.27522 0.86427 0.82309 0.79215 0.79527 1.19103 1.20067 1.18454 1.22216 0.94627 1.00372 0.99237 0.92574 0.92330 0.92333 0.86541 0.91506 0.86600 0.90557 0.90085 0.90914 0.70626 0.86095 0.85928 0.91316 0.91778 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.47 37.16 0.35 -1.10 16 2 C 0.05 0.66 3.12 -64.15 -0.20 0.46 16 3 H 0.09 0.98 7.76 -51.93 -0.40 0.58 16 4 C -0.12 -1.52 3.75 -87.83 -0.33 -1.85 16 5 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.19 -2.80 5.15 -25.13 -0.13 -2.93 16 7 C -0.01 -0.14 5.26 -2.53 -0.01 -0.15 16 8 N -0.49 -7.09 5.86 -237.67 -1.39 -8.48 16 9 C 0.03 0.39 5.65 -4.07 -0.02 0.37 16 10 C 0.12 2.04 3.18 -68.53 -0.22 1.82 16 11 H 0.10 1.91 6.80 -51.93 -0.35 1.55 16 12 N -0.74 -14.72 2.66 -53.99 -0.14 -14.86 16 13 C 0.25 6.05 7.51 -154.81 -1.16 4.89 16 14 N -0.50 -12.07 8.98 -11.66 -0.10 -12.17 16 15 C -0.08 -1.91 11.22 -17.11 -0.19 -2.10 16 16 C 0.03 0.65 11.21 -17.33 -0.19 0.46 16 17 N -0.45 -12.39 8.15 -10.79 -0.09 -12.47 16 18 C 0.20 5.24 6.53 -84.61 -0.55 4.69 16 19 C -0.43 -10.91 8.86 -37.90 -0.34 -11.25 16 20 H 0.08 1.79 5.58 -52.49 -0.29 1.50 16 21 C 0.07 1.82 5.47 -17.32 -0.09 1.72 16 22 N -0.72 -18.71 11.59 55.56 0.64 -18.06 16 23 Si 0.90 17.87 29.57 -169.99 -5.03 12.85 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 27 C -0.13 -1.82 5.37 -26.12 -0.14 -1.96 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.67 7.00 -51.93 -0.36 0.30 16 31 H 0.12 2.11 5.08 -51.93 -0.26 1.85 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.12 2.13 4.76 -51.93 -0.25 1.88 16 34 H 0.08 1.12 7.92 -51.93 -0.41 0.70 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.07 0.96 7.90 -51.93 -0.41 0.55 16 37 H 0.43 8.16 0.11 -83.65 -0.01 8.16 16 38 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 39 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 40 H 0.28 6.53 8.29 -40.82 -0.34 6.19 16 41 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -28.62 314.10 -10.30 -38.92 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -5.69 Total: 16.49 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.23 Total: -6.93 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -1.09 Total: -66.06 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.62 -10.30 -38.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170965345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.921 kcal (2) G-P(sol) polarization free energy of solvation -28.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds