Wall clock time and date at job start Fri Apr 10 2020 19:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.85461 * 2 1 4 4 C 1.55287 * 110.93446 * 123.71803 * 2 1 3 5 5 H 1.09003 * 113.22596 * 314.17220 * 4 2 1 6 6 C 1.54988 * 103.09964 * 76.85803 * 4 2 1 7 7 C 1.54060 * 104.76714 * 24.64983 * 6 4 2 8 8 N 1.48240 * 106.69629 * 1.01191 * 7 6 4 9 9 C 1.47679 * 108.91238 * 88.16822 * 8 7 6 10 10 C 1.51661 * 109.66997 * 312.38429 * 9 8 7 11 11 H 1.09000 * 109.99552 * 184.77370 * 10 9 8 12 12 N 1.46500 * 108.00707 * 65.60194 * 10 9 8 13 13 C 1.37945 * 119.99818 * 120.13478 * 12 10 9 14 14 N 1.32624 * 120.23498 * 359.71936 * 13 12 10 15 15 C 1.32238 * 120.08206 * 179.77267 * 14 13 12 16 16 C 1.38967 * 120.57159 * 0.50967 * 15 14 13 17 17 N 1.31708 * 120.47401 * 359.74587 * 16 15 14 18 18 C 1.33910 * 119.89981 * 359.97438 * 17 16 15 19 19 C 1.40824 * 120.27977 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99490 * 187.62094 * 19 18 17 21 21 C 1.40116 * 119.99830 * 7.61634 * 19 18 17 22 22 N 1.30732 * 120.00206 * 7.07967 * 21 19 18 23 23 Si 1.86799 * 119.99595 * 187.07910 * 21 19 18 24 24 H 1.48506 * 109.47089 * 84.99663 * 23 21 19 25 25 H 1.48498 * 109.47200 * 204.99265 * 23 21 19 26 26 H 1.48500 * 109.47519 * 324.99486 * 23 21 19 27 27 C 1.53152 * 110.81038 * 305.82961 * 10 9 8 28 28 H 1.09002 * 109.46648 * 296.28229 * 1 2 3 29 29 H 1.08997 * 109.47485 * 56.28058 * 1 2 3 30 30 H 1.08999 * 109.47114 * 176.28482 * 1 2 3 31 31 H 1.09000 * 110.37856 * 143.47273 * 6 4 2 32 32 H 1.08997 * 110.38035 * 265.82681 * 6 4 2 33 33 H 1.08996 * 110.01588 * 120.32713 * 7 6 4 34 34 H 1.09006 * 110.01430 * 241.66232 * 7 6 4 35 35 H 1.09000 * 109.50062 * 72.85313 * 9 8 7 36 36 H 1.08992 * 109.50343 * 192.93650 * 9 8 7 37 37 H 0.96995 * 120.00682 * 300.12858 * 12 10 9 38 38 H 1.08005 * 119.71508 * 180.22991 * 15 14 13 39 39 H 1.07998 * 119.76366 * 179.76807 * 16 15 14 40 40 H 0.96999 * 119.99855 * 179.97438 * 22 21 19 41 41 H 1.09001 * 109.63028 * 293.06233 * 27 10 9 42 42 H 1.09000 * 109.63194 * 172.66757 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0849 -0.8051 1.2064 5 1 1.5866 -0.5688 2.1466 6 6 1.8898 -2.2780 0.7653 7 6 1.8692 -2.2274 -0.7744 8 7 2.0681 -0.8090 -1.1565 9 6 3.5164 -0.5402 -1.2620 10 6 4.2278 -1.0898 -0.0405 11 1 5.2836 -0.8208 -0.0716 12 7 4.1000 -2.5490 -0.0602 13 6 5.2296 -3.3398 -0.1009 14 7 6.4333 -2.7839 -0.1279 15 6 7.5143 -3.5448 -0.1623 16 6 7.4032 -4.9299 -0.1813 17 7 6.2187 -5.5054 -0.1602 18 6 5.1117 -4.7531 -0.1197 19 6 3.8412 -5.3600 -0.0963 20 1 2.9517 -4.7543 -0.1878 21 6 3.7311 -6.7496 0.0455 22 7 4.7949 -7.4676 0.2945 23 14 2.0643 -7.5763 -0.1212 24 1 1.7855 -7.8434 -1.5552 25 1 2.0701 -8.8578 0.6289 26 1 1.0122 -6.6848 0.4298 27 6 3.6019 -0.5425 1.2458 28 1 -0.3633 0.4551 0.9215 29 1 -0.3634 0.5705 -0.8547 30 1 -0.3633 -1.0255 -0.0666 31 1 2.7205 -2.8918 1.1138 32 1 0.9447 -2.6660 1.1450 33 1 2.6755 -2.8393 -1.1786 34 1 0.9085 -2.5835 -1.1465 35 1 3.9099 -1.0140 -2.1613 36 1 3.6840 0.5354 -1.3141 37 1 3.2212 -2.9593 -0.0446 38 1 8.4918 -3.0859 -0.1804 39 1 8.2946 -5.5388 -0.2132 40 1 4.7185 -8.4295 0.3931 41 1 3.7863 0.5295 1.3154 42 1 4.0384 -1.0460 2.1084 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170965345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:35 Heat of formation + Delta-G solvation = 124.926301 kcal Electronic energy + Delta-G solvation = -24457.858912 eV Core-core repulsion = 21247.443054 eV Total energy + Delta-G solvation = -3210.415858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.97615 -40.56779 -36.31882 -35.86810 -33.51404 -33.33917 -32.97708 -31.86158 -30.04868 -27.88618 -26.50860 -25.36782 -24.11567 -23.30096 -22.08912 -21.59521 -20.93467 -19.46410 -18.82894 -17.77464 -16.91410 -16.33811 -15.95096 -15.65996 -15.38094 -15.26015 -15.12210 -14.95754 -14.43741 -14.26628 -13.94653 -13.66860 -13.34793 -13.18638 -13.07574 -12.97487 -12.87115 -12.48811 -12.32805 -12.10784 -12.10370 -11.94995 -11.70099 -11.53123 -11.44712 -11.37268 -11.18908 -10.94784 -10.34035 -9.43738 -9.22713 -8.46755 -8.30157 -6.31355 0.80408 1.25174 1.39851 1.52308 1.53884 2.20185 2.81221 2.86116 2.97760 3.57310 3.68923 3.88579 3.89745 4.03820 4.12886 4.17193 4.29684 4.31222 4.37244 4.42453 4.53491 4.60289 4.64821 4.68343 4.79384 4.85265 4.89315 4.97064 5.03524 5.04992 5.12309 5.15452 5.16378 5.23284 5.26777 5.27076 5.45330 5.80191 5.84268 5.97817 6.11168 6.32671 6.70797 6.81036 7.02048 7.61766 8.08799 8.41949 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.007312 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.175610 B = 3828.211769 C = 5264.066083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 H 0.104 0.896 4 C -0.107 4.107 5 H 0.109 0.891 6 C -0.185 4.185 7 C -0.006 4.006 8 N -0.489 5.489 9 C 0.033 3.967 10 C 0.116 3.884 11 H 0.081 0.919 12 N -0.730 5.730 13 C 0.249 3.751 14 N -0.515 5.515 15 C -0.080 4.080 16 C 0.000 4.000 17 N -0.487 5.487 18 C 0.160 3.840 19 C -0.452 4.452 20 H 0.093 0.907 21 C 0.028 3.972 22 N -0.760 5.760 23 Si 0.977 3.023 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.244 1.244 27 C -0.120 4.120 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.435 0.565 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.281 0.719 41 H 0.092 0.908 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.713 11.717 1.272 15.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.050 4.050 3 H 0.122 0.878 4 C -0.126 4.126 5 H 0.127 0.873 6 C -0.224 4.224 7 C -0.135 4.135 8 N -0.211 5.211 9 C -0.097 4.097 10 C 0.009 3.991 11 H 0.099 0.901 12 N -0.394 5.394 13 C 0.002 3.998 14 N -0.237 5.237 15 C -0.233 4.233 16 C -0.161 4.161 17 N -0.205 5.205 18 C 0.025 3.975 19 C -0.486 4.486 20 H 0.110 0.890 21 C -0.194 4.194 22 N -0.383 5.383 23 Si 0.797 3.203 24 H -0.189 1.189 25 H -0.195 1.195 26 H -0.167 1.167 27 C -0.159 4.159 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.299 0.701 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.727 11.738 0.730 15.262 hybrid contribution 0.537 -1.270 0.694 1.544 sum -9.190 10.468 1.424 14.002 Atomic orbital electron populations 1.21631 0.92567 1.02144 1.02605 1.23653 0.96744 0.97394 0.87175 0.87778 1.23049 0.95450 0.93652 1.00481 0.87270 1.23621 1.03270 0.99195 0.96308 1.23707 1.02992 0.92512 0.94338 1.66932 1.11956 1.03506 1.38705 1.22585 0.88597 1.01835 0.96707 1.21289 1.01153 0.81163 0.95508 0.90106 1.47527 1.05853 1.04626 1.81379 1.19930 0.88625 0.90032 1.01248 1.67446 0.97876 1.39561 1.18833 1.22771 0.96521 0.91798 1.12243 1.23465 0.96988 0.93946 1.01689 1.69300 0.97227 1.36617 1.17386 1.19471 0.94529 0.87896 0.95646 1.19541 0.91571 0.93292 1.44238 0.88962 1.26910 1.02003 0.97954 0.92570 1.70133 1.32031 1.07455 1.28653 0.85289 0.77340 0.78226 0.79492 1.18858 1.19490 1.16718 1.22160 0.95491 1.01632 0.96629 0.90435 0.91809 0.93139 0.89922 0.89847 0.89908 0.89358 0.92415 0.88180 0.70055 0.83039 0.83996 0.90883 0.88912 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.47 71.98 0.68 -1.59 16 2 C 0.06 1.20 3.12 44.88 0.14 1.34 16 3 H 0.10 1.85 7.76 -2.39 -0.02 1.83 16 4 C -0.11 -2.48 3.75 -8.99 -0.03 -2.51 16 5 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 6 C -0.18 -5.28 5.15 31.63 0.16 -5.11 16 7 C -0.01 -0.18 5.26 86.40 0.45 0.28 16 8 N -0.49 -13.11 5.86 -905.86 -5.31 -18.42 16 9 C 0.03 0.95 5.65 85.71 0.48 1.43 16 10 C 0.12 3.85 3.18 44.60 0.14 4.00 16 11 H 0.08 3.04 6.80 -2.39 -0.02 3.02 16 12 N -0.73 -29.60 2.66 -324.73 -0.86 -30.46 16 13 C 0.25 12.45 7.51 134.03 1.01 13.46 16 14 N -0.51 -25.35 8.98 -190.82 -1.71 -27.07 16 15 C -0.08 -3.80 11.22 84.81 0.95 -2.85 16 16 C 0.00 0.02 11.21 84.89 0.95 0.98 16 17 N -0.49 -27.99 8.15 -188.06 -1.53 -29.52 16 18 C 0.16 8.87 6.53 40.35 0.26 9.13 16 19 C -0.45 -23.49 8.86 23.36 0.21 -23.29 16 20 H 0.09 4.32 5.58 -2.91 -0.02 4.31 16 21 C 0.03 1.38 5.47 85.31 0.47 1.84 16 22 N -0.76 -40.97 11.59 21.86 0.25 -40.72 16 23 Si 0.98 36.72 29.57 68.60 2.03 38.75 16 24 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 25 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.24 -8.43 7.11 99.48 0.71 -7.72 16 27 C -0.12 -3.25 5.37 30.99 0.17 -3.09 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.96 7.00 -2.39 -0.02 0.94 16 31 H 0.08 3.00 5.08 -2.39 -0.01 2.99 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 3.09 4.76 -2.39 -0.01 3.07 16 34 H 0.09 2.43 7.92 -2.38 -0.02 2.41 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 36 H 0.10 2.35 7.90 -2.39 -0.02 2.33 16 37 H 0.44 16.71 0.11 -132.94 -0.01 16.69 16 38 H 0.15 6.08 8.06 -2.91 -0.02 6.06 16 39 H 0.14 6.36 8.06 -2.91 -0.02 6.33 16 40 H 0.28 13.72 8.29 -92.71 -0.77 12.95 16 41 H 0.09 1.99 8.07 -2.39 -0.02 1.98 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -64.74 314.10 -0.07 -64.81 By element: Atomic # 1 Polarization: 47.58 SS G_CDS: 1.03 Total: 48.61 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 6.04 Total: -5.98 kcal Atomic # 7 Polarization: -137.02 SS G_CDS: -9.17 Total: -146.19 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -64.74 -0.07 -64.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170965345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.735 kcal (2) G-P(sol) polarization free energy of solvation -64.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds