Wall clock time and date at job start Fri Apr 10 2020 19:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.82435 * 2 1 4 4 C 1.55292 * 110.93296 * 123.73071 * 2 1 3 5 5 H 1.09003 * 113.22670 * 315.04303 * 4 2 1 6 6 C 1.54993 * 102.27801 * 77.19649 * 4 2 1 7 7 C 1.54059 * 104.76175 * 24.30629 * 6 4 2 8 8 N 1.48242 * 106.70103 * 1.00907 * 7 6 4 9 9 C 1.47677 * 108.91545 * 88.17133 * 8 7 6 10 10 C 1.52996 * 109.28140 * 312.92307 * 9 8 7 11 11 H 1.09000 * 109.37076 * 64.97178 * 10 9 8 12 12 N 1.46498 * 109.36807 * 184.59394 * 10 9 8 13 13 C 1.38799 * 120.00023 * 274.99911 * 12 10 9 14 14 C 1.40076 * 120.75848 * 359.72076 * 13 12 10 15 15 N 1.31662 * 119.13864 * 179.71293 * 14 13 12 16 16 C 1.33598 * 120.79042 * 0.57590 * 15 14 13 17 17 C 1.41150 * 119.17277 * 179.67950 * 16 15 14 18 18 H 1.07998 * 120.00019 * 180.02562 * 17 16 15 19 19 C 1.40043 * 119.99885 * 0.02562 * 17 16 15 20 20 N 1.30731 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47174 * 59.99688 * 21 19 17 23 23 H 1.48494 * 109.47334 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46814 * 300.00076 * 21 19 17 25 25 N 1.33599 * 121.65607 * 359.69658 * 16 15 14 26 26 C 1.31660 * 120.79212 * 0.02562 * 25 16 15 27 27 C 1.53152 * 110.08830 * 304.78207 * 10 9 8 28 28 H 1.09001 * 109.47281 * 182.24108 * 1 2 3 29 29 H 1.08997 * 109.47191 * 302.24080 * 1 2 3 30 30 H 1.09001 * 109.47516 * 62.24001 * 1 2 3 31 31 H 1.09000 * 110.37950 * 143.12599 * 6 4 2 32 32 H 1.09002 * 110.38079 * 265.38048 * 6 4 2 33 33 H 1.09002 * 110.01969 * 241.69937 * 7 6 4 34 34 H 1.09006 * 110.01383 * 120.31746 * 7 6 4 35 35 H 1.08997 * 109.50567 * 192.98253 * 9 8 7 36 36 H 1.09004 * 109.50591 * 72.86135 * 9 8 7 37 37 H 0.97005 * 119.99921 * 94.99757 * 12 10 9 38 38 H 1.08003 * 120.43202 * 359.97438 * 14 13 12 39 39 H 0.96997 * 119.99607 * 179.97438 * 20 19 17 40 40 H 1.08006 * 120.42968 * 179.97438 * 26 25 16 41 41 H 1.09006 * 109.63012 * 173.70241 * 27 10 9 42 42 H 1.09006 * 109.63457 * 294.29366 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9175 1.0188 0.0000 4 6 2.0848 -0.8054 1.2063 5 1 1.5763 -0.5804 2.1438 6 6 1.8891 -2.2711 0.7419 7 6 1.8643 -2.1955 -0.7966 8 7 2.0616 -0.7710 -1.1564 9 6 3.5094 -0.4999 -1.2614 10 6 4.2234 -1.0889 -0.0431 11 1 4.1285 -2.1746 -0.0584 12 7 5.6422 -0.7270 -0.0895 13 6 6.5324 -1.5013 -0.8206 14 6 6.0924 -2.6353 -1.5153 15 7 6.9633 -3.3436 -2.2034 16 6 8.2536 -2.9984 -2.2342 17 6 9.1589 -3.7861 -2.9774 18 1 10.2049 -3.5195 -3.0112 19 6 8.7007 -4.9132 -3.6708 20 7 7.4344 -5.2355 -3.6303 21 14 9.8990 -5.9560 -4.6538 22 1 10.9461 -6.4931 -3.7482 23 1 9.1692 -7.0826 -5.2889 24 1 10.5343 -5.1216 -5.7051 25 7 8.7085 -1.9267 -1.5791 26 6 7.8924 -1.1701 -0.8755 27 6 3.6019 -0.5429 1.2457 28 1 -0.3634 -1.0269 0.0402 29 1 -0.3633 0.5482 0.8692 30 1 -0.3634 0.4786 -0.9094 31 1 2.7209 -2.8901 1.0782 32 1 0.9459 -2.6662 1.1194 33 1 0.9025 -2.5453 -1.1719 34 1 2.6699 -2.8004 -1.2129 35 1 3.6765 0.5766 -1.2958 36 1 3.9007 -0.9587 -2.1695 37 1 5.9595 0.0538 0.3907 38 1 5.0516 -2.9226 -1.4903 39 1 7.1171 -6.0160 -4.1110 40 1 8.2666 -0.3052 -0.3478 41 1 4.0389 -1.0495 2.1062 42 1 3.7863 0.5292 1.3157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170974464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 19:29:53 Heat of formation + Delta-G solvation = 64.434824 kcal Electronic energy + Delta-G solvation = -23269.997733 eV Core-core repulsion = 20056.958767 eV Total energy + Delta-G solvation = -3213.038965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13020 -38.89396 -35.62565 -33.46451 -32.11510 -31.69222 -31.41685 -30.54210 -28.56678 -26.30841 -25.06622 -24.31536 -22.95971 -21.66655 -20.64155 -20.52744 -19.38233 -17.78876 -16.79072 -16.54633 -15.56752 -15.27669 -14.96464 -14.32388 -14.29804 -14.22231 -13.74646 -13.35237 -12.97501 -12.91526 -12.62401 -12.42138 -12.33794 -12.22961 -11.96560 -11.49041 -11.25712 -11.20072 -11.15576 -11.00189 -10.69269 -10.56581 -10.48171 -10.37883 -10.19507 -9.99302 -9.36774 -9.20183 -8.98458 -8.41217 -7.25271 -6.75358 -6.39374 -4.36059 2.75639 2.92150 3.13255 3.16619 3.22306 3.85052 4.00571 4.17057 4.46603 4.64323 4.77133 4.80368 5.07549 5.08777 5.13880 5.22806 5.26241 5.35639 5.47320 5.56749 5.65083 5.72290 5.76994 5.82126 5.87879 5.90762 5.94814 5.99902 6.00831 6.07350 6.15265 6.18932 6.28692 6.36263 6.47812 6.86185 6.94632 7.09742 7.18538 7.39752 8.15132 8.28549 8.51213 8.58377 8.75976 9.22715 10.25204 10.41104 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.028417 B = 0.003884 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.096084 B = 7207.457908 C = 7819.440315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.055 3.945 3 H 0.084 0.916 4 C -0.117 4.117 5 H 0.091 0.909 6 C -0.148 4.148 7 C 0.025 3.975 8 N -0.490 5.490 9 C 0.020 3.980 10 C 0.134 3.866 11 H 0.077 0.923 12 N -0.745 5.745 13 C -0.039 4.039 14 C 0.101 3.899 15 N -0.475 5.475 16 C 0.370 3.630 17 C -0.414 4.414 18 H 0.088 0.912 19 C 0.069 3.931 20 N -0.726 5.726 21 Si 0.915 3.085 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.265 1.265 25 N -0.567 5.567 26 C 0.103 3.897 27 C -0.121 4.121 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.384 0.616 38 H 0.123 0.877 39 H 0.272 0.728 40 H 0.125 0.875 41 H 0.068 0.932 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 6.830 8.014 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.054 4.054 3 H 0.102 0.898 4 C -0.138 4.138 5 H 0.109 0.891 6 C -0.187 4.187 7 C -0.104 4.104 8 N -0.211 5.211 9 C -0.110 4.110 10 C 0.025 3.975 11 H 0.095 0.905 12 N -0.381 5.381 13 C -0.144 4.144 14 C -0.076 4.076 15 N -0.191 5.191 16 C 0.129 3.871 17 C -0.451 4.451 18 H 0.106 0.894 19 C -0.156 4.156 20 N -0.350 5.350 21 Si 0.739 3.261 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.189 1.189 25 N -0.286 5.286 26 C -0.072 4.072 27 C -0.159 4.159 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.217 0.783 38 H 0.140 0.860 39 H 0.083 0.917 40 H 0.143 0.857 41 H 0.086 0.914 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.955 6.087 6.723 15.814 hybrid contribution 0.365 0.171 1.124 1.194 sum -12.591 6.258 7.847 16.101 Atomic orbital electron populations 1.21644 0.93967 1.02060 1.01617 1.23135 0.95760 0.97660 0.88849 0.89796 1.23095 0.95640 0.95601 0.99423 0.89050 1.22991 1.02175 0.96591 0.96914 1.23110 1.02573 0.90865 0.93807 1.66428 1.13009 1.04550 1.37138 1.23144 0.86989 1.01499 0.99355 1.21372 0.82388 0.99882 0.93819 0.90519 1.43547 1.04368 1.31843 1.58351 1.19177 0.91781 0.98613 1.04823 1.22654 0.99036 0.91014 0.94852 1.69279 1.02654 1.28887 1.18306 1.19793 0.87987 0.88178 0.91189 1.19056 0.95241 1.06512 1.24322 0.89402 1.25992 0.95644 0.97675 0.96267 1.70133 1.14221 1.20824 1.29778 0.86280 0.80675 0.79128 0.80045 1.18984 1.20329 1.18949 1.68548 1.38078 1.08692 1.13260 1.22175 0.88162 0.98614 0.98226 1.22070 0.94577 1.01221 0.98052 0.92469 0.92524 0.92028 0.90957 0.91463 0.90369 0.90594 0.90961 0.89965 0.78324 0.86018 0.91707 0.85730 0.91358 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.44 37.16 0.35 -0.83 16 2 C 0.05 0.56 3.02 -65.44 -0.20 0.37 16 3 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 4 C -0.12 -1.15 3.82 -87.83 -0.34 -1.48 16 5 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.15 -1.54 5.34 -25.13 -0.13 -1.68 16 7 C 0.02 0.30 5.57 -2.53 -0.01 0.29 16 8 N -0.49 -6.18 5.82 -221.18 -1.29 -7.47 16 9 C 0.02 0.29 5.40 -3.40 -0.02 0.27 16 10 C 0.13 1.86 1.79 -67.85 -0.12 1.74 16 11 H 0.08 1.20 3.71 -51.93 -0.19 1.01 16 12 N -0.74 -12.05 5.21 -51.70 -0.27 -12.32 16 13 C -0.04 -0.83 6.70 -83.33 -0.56 -1.39 16 14 C 0.10 2.41 10.16 -16.94 -0.17 2.23 16 15 N -0.47 -13.24 7.84 -12.49 -0.10 -13.34 16 16 C 0.37 10.63 7.35 -158.22 -1.16 9.47 16 17 C -0.41 -11.70 9.35 -37.80 -0.35 -12.06 16 18 H 0.09 2.39 7.85 -52.49 -0.41 1.98 16 19 C 0.07 1.81 5.50 -17.34 -0.10 1.71 16 20 N -0.73 -19.63 11.41 55.55 0.63 -19.00 16 21 Si 0.91 19.20 29.56 -169.99 -5.02 14.17 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 25 N -0.57 -15.21 10.34 -12.49 -0.13 -15.34 16 26 C 0.10 2.34 11.20 -16.93 -0.19 2.15 16 27 C -0.12 -1.34 4.98 -26.13 -0.13 -1.47 16 28 H 0.06 0.50 6.98 -51.93 -0.36 0.14 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.83 6.94 -51.93 -0.36 0.46 16 32 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.08 0.87 8.00 -51.93 -0.42 0.45 16 34 H 0.08 1.03 6.93 -51.93 -0.36 0.67 16 35 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 36 H 0.08 1.39 7.77 -51.93 -0.40 0.99 16 37 H 0.38 5.47 8.63 -40.82 -0.35 5.11 16 38 H 0.12 2.63 6.27 -52.48 -0.33 2.30 16 39 H 0.27 6.67 8.29 -40.82 -0.34 6.33 16 40 H 0.13 2.40 8.06 -52.48 -0.42 1.97 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 LS Contribution 324.82 15.07 4.90 4.90 Total: -1.00 -30.24 324.82 -10.49 -40.74 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.08 Total: 8.35 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -3.13 Total: -0.69 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -1.15 Total: -67.46 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.24 -10.49 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170974464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.172 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds